Wall clock time and date at job start Mon Mar 30 2020 07:05:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 120.00211 * 2 1 4 4 H 1.48505 * 109.47182 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46914 * 299.99531 * 3 2 1 6 6 H 1.48495 * 109.47185 * 59.99566 * 3 2 1 7 7 C 1.37885 * 120.00161 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00033 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99647 * 0.02562 * 7 2 1 10 10 O 1.42897 * 109.46981 * 179.97438 * 9 7 2 11 11 C 1.42900 * 114.00035 * 179.97438 * 10 9 7 12 12 C 1.52996 * 109.47489 * 179.97438 * 11 10 9 13 13 O 1.45207 * 109.46910 * 65.00023 * 12 11 10 14 14 C 1.34225 * 116.99766 * 179.97438 * 13 12 11 15 15 O 1.20823 * 120.00603 * 0.02562 * 14 13 12 16 16 C 1.50701 * 119.99548 * 180.02562 * 14 13 12 17 17 H 1.08997 * 110.45745 * 331.04280 * 16 14 13 18 18 C 1.55346 * 110.60738 * 208.39452 * 16 14 13 19 19 C 1.54926 * 102.65806 * 203.75213 * 18 16 14 20 20 C 1.54380 * 104.34135 * 37.71118 * 19 18 16 21 21 C 1.53484 * 106.39909 * 336.37201 * 20 19 18 22 22 C 1.52561 * 121.07947 * 215.95569 * 21 20 19 23 23 C 1.52566 * 121.05867 * 144.24419 * 21 20 19 24 24 H 0.96994 * 119.99825 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.46994 * 59.99607 * 9 7 2 26 26 H 1.08995 * 109.47067 * 300.00131 * 9 7 2 27 27 H 1.09014 * 109.46767 * 60.00216 * 11 10 9 28 28 H 1.08996 * 109.47473 * 300.00871 * 11 10 9 29 29 H 1.09001 * 109.47119 * 305.00751 * 12 11 10 30 30 H 1.08992 * 109.47409 * 185.00644 * 12 11 10 31 31 H 1.08996 * 110.88362 * 85.44036 * 18 16 14 32 32 H 1.08992 * 110.74951 * 321.99908 * 18 16 14 33 33 H 1.09000 * 110.48053 * 278.96116 * 19 18 16 34 34 H 1.08998 * 110.48036 * 156.46312 * 19 18 16 35 35 H 1.08992 * 110.07439 * 95.60743 * 20 19 18 36 36 H 1.09001 * 110.06846 * 217.14251 * 20 19 18 37 37 H 1.09003 * 117.51092 * 357.02439 * 22 21 20 38 38 H 1.08998 * 117.50950 * 142.10485 * 22 21 20 39 39 H 1.09002 * 117.51506 * 217.92659 * 23 21 20 40 40 H 1.09002 * 117.51135 * 2.98152 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 8 2.1796 -3.5853 0.0005 11 6 1.5651 -4.8754 0.0011 12 6 2.6479 -5.9563 0.0004 13 8 3.4001 -5.8885 1.2406 14 6 4.3942 -6.7763 1.3996 15 8 4.6285 -7.5830 0.5311 16 6 5.2181 -6.7669 2.6614 17 1 5.2609 -5.7618 3.0810 18 6 6.6500 -7.3016 2.3835 19 6 7.1048 -7.7957 3.7796 20 6 5.8330 -8.4131 4.3997 21 6 4.6416 -7.7562 3.6892 22 6 3.3530 -7.4389 4.4418 23 6 3.3726 -8.5469 3.3856 24 1 -0.4849 0.8400 -0.0004 25 1 0.6247 -2.5571 -0.8897 26 1 0.6240 -2.5567 0.8902 27 1 0.9446 -4.9827 -0.8888 28 1 0.9451 -4.9822 0.8912 29 1 3.3209 -5.7958 -0.8418 30 1 2.1819 -6.9375 -0.0888 31 1 7.3002 -6.5032 2.0257 32 1 6.6227 -8.1267 1.6719 33 1 7.4566 -6.9597 4.3841 34 1 7.8859 -8.5496 3.6815 35 1 5.8204 -9.4901 4.2330 36 1 5.7958 -8.1990 5.4678 37 1 3.2932 -7.7410 5.4874 38 1 2.8379 -6.5120 4.1896 39 1 2.8703 -8.3489 2.4387 40 1 3.3260 -9.5780 3.7359 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000860175069.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:00 Heat of formation + Delta-G solvation = -144.904153 kcal Electronic energy + Delta-G solvation = -20487.940131 eV Core-core repulsion = 17267.234273 eV Total energy + Delta-G solvation = -3220.705857 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.97036 -39.78457 -38.68944 -37.42716 -35.11991 -34.96850 -31.95848 -30.42963 -29.01103 -26.88350 -24.66095 -24.21236 -23.49154 -22.83972 -21.39209 -19.96444 -18.84121 -18.68190 -18.00622 -17.51327 -17.18437 -16.62089 -16.32409 -16.08396 -15.75067 -15.40195 -14.95584 -14.28477 -14.22106 -13.90890 -13.69276 -13.51535 -13.24307 -12.93614 -12.84269 -12.72874 -12.48989 -12.47940 -12.05492 -12.04661 -11.91621 -11.78136 -11.55565 -11.51682 -11.29367 -11.25636 -10.92623 -10.62314 -10.30962 -8.34303 -6.46746 1.07413 1.39673 1.40990 1.55777 1.61119 2.33332 2.73439 2.99687 3.01279 3.29190 3.46415 3.71112 3.77689 3.86716 3.97915 4.04002 4.18529 4.26154 4.34983 4.41313 4.45603 4.54067 4.62010 4.67421 4.74393 4.81773 4.86900 4.96314 5.00810 5.07819 5.14076 5.16296 5.18534 5.23562 5.39413 5.44801 5.52440 5.92463 6.46455 6.66121 6.76793 7.25018 8.78235 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.024406 B = 0.003688 C = 0.003537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.004026 B = 7590.056025 C = 7914.387249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.008 3.992 3 Si 0.983 3.017 4 H -0.266 1.266 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.551 4.551 8 H 0.059 0.941 9 C 0.208 3.792 10 O -0.409 6.409 11 C 0.055 3.945 12 C 0.076 3.924 13 O -0.359 6.359 14 C 0.467 3.533 15 O -0.534 6.534 16 C -0.062 4.062 17 H 0.112 0.888 18 C -0.109 4.109 19 C -0.114 4.114 20 C -0.081 4.081 21 C -0.123 4.123 22 C -0.159 4.159 23 C -0.178 4.178 24 H 0.272 0.728 25 H -0.008 1.008 26 H -0.010 1.010 27 H 0.082 0.918 28 H 0.056 0.944 29 H 0.070 0.930 30 H 0.105 0.895 31 H 0.079 0.921 32 H 0.071 0.929 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.077 0.923 36 H 0.088 0.912 37 H 0.123 0.877 38 H 0.085 0.915 39 H 0.066 0.934 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.579 -17.697 9.764 22.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.190 4.190 3 Si 0.806 3.194 4 H -0.190 1.190 5 H -0.195 1.195 6 H -0.195 1.195 7 C -0.589 4.589 8 H 0.078 0.922 9 C 0.133 3.867 10 O -0.330 6.330 11 C -0.022 4.022 12 C 0.003 3.997 13 O -0.275 6.275 14 C 0.312 3.688 15 O -0.424 6.424 16 C -0.081 4.081 17 H 0.130 0.870 18 C -0.147 4.147 19 C -0.151 4.151 20 C -0.118 4.118 21 C -0.123 4.123 22 C -0.195 4.195 23 C -0.214 4.214 24 H 0.081 0.919 25 H 0.010 0.990 26 H 0.008 0.992 27 H 0.100 0.900 28 H 0.074 0.926 29 H 0.088 0.912 30 H 0.123 0.877 31 H 0.098 0.902 32 H 0.090 0.910 33 H 0.101 0.899 34 H 0.107 0.893 35 H 0.096 0.904 36 H 0.107 0.893 37 H 0.141 0.859 38 H 0.104 0.896 39 H 0.085 0.915 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 10.659 -17.786 9.480 22.800 hybrid contribution -0.640 0.826 -0.650 1.231 sum 10.018 -16.960 8.830 21.587 Atomic orbital electron populations 1.70061 1.07697 1.28690 1.50361 1.25947 0.95980 1.03323 0.93782 0.85134 0.78595 0.77266 0.78397 1.18980 1.19527 1.19476 1.21409 0.94069 0.90909 1.52498 0.92231 1.19886 0.88565 0.84374 0.93890 1.87863 1.35586 1.14188 1.95324 1.22622 0.94400 0.83358 1.01772 1.23166 0.93210 0.99036 0.84285 1.86634 1.44299 1.55028 1.41582 1.24204 0.78400 0.76833 0.89346 1.90591 1.68500 1.38834 1.44473 1.21739 0.95016 1.02410 0.88916 0.86999 1.22596 0.91283 1.01247 0.99567 1.22343 0.97443 1.01427 0.93908 1.21665 0.90633 0.99734 0.99782 1.21687 0.91000 1.00156 0.99483 1.23112 0.98491 0.99543 0.98401 1.23060 0.99965 0.98429 0.99994 0.91935 0.99006 0.99245 0.90021 0.92612 0.91172 0.87718 0.90236 0.90987 0.89946 0.89310 0.90424 0.89298 0.85891 0.89633 0.91494 0.86465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.78 13.29 21.45 0.28 -55.50 16 2 C 0.01 0.48 5.46 84.66 0.46 0.95 16 3 Si 0.98 44.54 29.54 68.60 2.03 46.56 16 4 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 5 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 6 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 7 C -0.55 -33.34 9.43 25.60 0.24 -33.10 16 8 H 0.06 3.60 7.81 -2.91 -0.02 3.58 16 9 C 0.21 11.81 5.69 71.24 0.41 12.21 16 10 O -0.41 -20.66 10.30 -145.57 -1.50 -22.16 16 11 C 0.06 2.08 6.33 71.98 0.46 2.54 16 12 C 0.08 2.53 5.85 71.98 0.42 2.95 16 13 O -0.36 -12.63 10.19 -48.73 -0.50 -13.13 16 14 C 0.47 14.60 5.34 71.24 0.38 14.98 16 15 O -0.53 -18.40 15.65 21.97 0.34 -18.05 16 16 C -0.06 -1.47 3.23 -10.44 -0.03 -1.51 16 17 H 0.11 2.63 8.14 -2.39 -0.02 2.61 16 18 C -0.11 -2.14 6.24 32.06 0.20 -1.94 16 19 C -0.11 -1.50 6.83 31.72 0.22 -1.28 16 20 C -0.08 -1.10 6.55 31.23 0.20 -0.90 16 21 C -0.12 -2.40 2.40 -52.02 -0.12 -2.53 16 22 C -0.16 -3.02 10.26 30.48 0.31 -2.70 16 23 C -0.18 -3.65 9.65 30.48 0.29 -3.35 16 24 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 25 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 26 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 27 H 0.08 2.75 8.14 -2.38 -0.02 2.73 16 28 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 29 H 0.07 2.40 8.13 -2.39 -0.02 2.38 16 30 H 0.10 2.84 8.13 -2.39 -0.02 2.82 16 31 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.07 1.62 7.28 -2.39 -0.02 1.60 16 33 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.12 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 39 H 0.07 1.69 6.89 -2.39 -0.02 1.67 16 40 H 0.12 1.92 8.14 -2.39 -0.02 1.90 16 Total: -1.00 -70.77 335.94 5.10 -65.67 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: 1.00 Total: 10.29 kcal Atomic # 6 Polarization: -17.12 SS G_CDS: 3.44 Total: -13.68 kcal Atomic # 7 Polarization: -55.78 SS G_CDS: 0.28 Total: -55.50 kcal Atomic # 8 Polarization: -51.69 SS G_CDS: -1.65 Total: -53.34 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.56 kcal Total: -70.77 5.10 -65.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000860175069.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.230 kcal (2) G-P(sol) polarization free energy of solvation -70.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds