Wall clock time and date at job start Mon Mar 30 2020 07:26:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09003 * 109.47263 * 2 1 4 4 C 1.50704 * 109.47403 * 120.00207 * 2 1 3 5 5 O 1.20821 * 120.00203 * 120.00129 * 4 2 1 6 6 O 1.34231 * 119.99730 * 299.99759 * 4 2 1 7 7 C 1.45194 * 117.00083 * 179.97438 * 6 4 2 8 8 C 1.52997 * 109.47567 * 180.02562 * 7 6 4 9 9 C 1.50710 * 115.54677 * 294.88399 * 8 7 6 10 10 H 1.07995 * 119.99486 * 95.16704 * 9 8 7 11 11 C 1.37867 * 119.99965 * 275.16867 * 9 8 7 12 12 N 1.31510 * 120.00312 * 5.80704 * 11 9 8 13 13 Si 1.86805 * 119.99741 * 186.08921 * 11 9 8 14 14 H 1.48499 * 109.47321 * 59.99871 * 13 11 9 15 15 H 1.48501 * 109.47114 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.46952 * 299.99526 * 13 11 9 17 17 C 1.53001 * 117.49997 * 80.55150 * 8 7 6 18 18 C 1.53003 * 117.50530 * 149.21606 * 8 7 6 19 19 C 1.53005 * 109.47309 * 240.00029 * 2 1 3 20 20 H 1.08997 * 109.82608 * 185.56532 * 19 2 1 21 21 C 1.54383 * 109.82825 * 64.58545 * 19 2 1 22 22 C 1.55305 * 102.25053 * 219.13331 * 21 19 2 23 23 C 1.54944 * 100.94493 * 34.13475 * 22 21 19 24 24 O 1.43236 * 109.82964 * 306.45403 * 19 2 1 25 25 H 1.09003 * 109.47263 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47124 * 299.99928 * 1 2 3 27 27 H 1.09000 * 109.47289 * 60.00159 * 1 2 3 28 28 H 1.09003 * 109.47372 * 59.99874 * 7 6 4 29 29 H 1.09004 * 109.47325 * 300.00330 * 7 6 4 30 30 H 0.97000 * 120.00155 * 180.02562 * 12 11 9 31 31 H 1.08999 * 117.49526 * 215.00570 * 17 8 7 32 32 H 1.08996 * 117.49609 * 0.02830 * 17 8 7 33 33 H 1.09002 * 117.49337 * 359.97438 * 18 8 7 34 34 H 1.08996 * 117.50010 * 144.99543 * 18 8 7 35 35 H 1.09003 * 110.84598 * 337.32498 * 21 19 2 36 36 H 1.09001 * 110.84401 * 100.93977 * 21 19 2 37 37 H 1.08996 * 111.12189 * 276.21177 * 22 21 19 38 38 H 1.08996 * 111.12465 * 152.05603 * 22 21 19 39 39 H 1.09001 * 110.30839 * 204.63991 * 23 22 21 40 40 H 1.08996 * 110.31085 * 82.46834 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2305 5 8 2.7270 -1.6928 1.1196 6 8 1.7081 -0.2518 2.4496 7 6 2.2268 -0.9863 3.5896 8 6 1.7549 -0.3198 4.8834 9 6 2.2824 1.0706 5.1281 10 1 1.6961 1.9295 4.8370 11 6 3.5135 1.2459 5.7236 12 7 4.2771 0.2049 5.9740 13 14 4.0934 2.9615 6.1819 14 1 3.1392 3.5655 7.1461 15 1 5.4394 2.8793 6.8039 16 1 4.1626 3.8033 4.9605 17 6 0.3352 -0.6310 5.3613 18 6 1.5388 -1.2181 6.1030 19 6 2.0400 -0.7213 -1.2493 20 1 3.1254 -0.8115 -1.2068 21 6 1.6269 0.0640 -2.5127 22 6 1.2539 -1.0744 -3.5010 23 6 0.6555 -2.1229 -2.5297 24 8 1.4472 -2.0223 -1.3352 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 3.3163 -0.9861 3.5568 29 1 1.8626 -2.0132 3.5566 30 1 5.1430 0.3282 6.3933 31 1 -0.2173 0.1698 5.8528 32 1 -0.2624 -1.3110 4.7543 33 1 1.7324 -2.2841 5.9834 34 1 1.7781 -0.8036 7.0822 35 1 0.7650 0.6996 -2.3098 36 1 2.4620 0.6513 -2.8946 37 1 2.1391 -1.4643 -4.0032 38 1 0.5102 -0.7391 -4.2238 39 1 0.7378 -3.1231 -2.9551 40 1 -0.3866 -1.8873 -2.3138 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000923061325.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:59 Heat of formation + Delta-G solvation = -117.015263 kcal Electronic energy + Delta-G solvation = -21146.573447 eV Core-core repulsion = 17927.076943 eV Total energy + Delta-G solvation = -3219.496504 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.30562 -39.03236 -36.70107 -35.09262 -33.66132 -32.07806 -31.93688 -28.43003 -26.87553 -25.35111 -24.53726 -22.28708 -21.45633 -21.06887 -19.38442 -19.19062 -17.07545 -16.76117 -16.48319 -15.90405 -15.46270 -15.39570 -14.60452 -14.44857 -14.00678 -13.81066 -13.42174 -12.97616 -12.59782 -12.14149 -12.04601 -11.87113 -11.71681 -11.58987 -11.52736 -11.19627 -11.09455 -10.95435 -10.85367 -10.78932 -10.53066 -10.25214 -9.81265 -9.74051 -9.52537 -9.39753 -8.79248 -8.44478 -8.16973 -6.04293 -4.09680 2.92929 3.31009 3.36099 3.37834 3.38764 3.83215 4.30773 4.40612 4.59106 4.72549 4.94044 5.04471 5.08938 5.17892 5.25528 5.34070 5.38528 5.51031 5.54114 5.61222 5.71430 5.79659 5.86118 5.98740 6.02026 6.05560 6.30213 6.32530 6.38928 6.59458 6.71510 6.77600 7.06086 7.06826 7.36037 7.40626 7.53837 7.88346 8.40556 8.59346 8.91465 9.55844 11.05151 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.026948 B = 0.004649 C = 0.004345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.780075 B = 6021.972228 C = 6442.285719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.097 4.097 3 H 0.113 0.887 4 C 0.458 3.542 5 O -0.511 6.511 6 O -0.339 6.339 7 C 0.117 3.883 8 C 0.038 3.962 9 C -0.489 4.489 10 H 0.062 0.938 11 C 0.069 3.931 12 N -0.882 5.882 13 Si 0.893 3.107 14 H -0.276 1.276 15 H -0.287 1.287 16 H -0.276 1.276 17 C -0.205 4.205 18 C -0.146 4.146 19 C 0.097 3.903 20 H 0.088 0.912 21 C -0.153 4.153 22 C -0.155 4.155 23 C 0.045 3.955 24 O -0.359 6.359 25 H 0.064 0.936 26 H 0.074 0.926 27 H 0.064 0.936 28 H 0.074 0.926 29 H 0.037 0.963 30 H 0.262 0.738 31 H 0.080 0.920 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.010 -0.392 -16.259 17.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.116 4.116 3 H 0.131 0.869 4 C 0.300 3.700 5 O -0.400 6.400 6 O -0.254 6.254 7 C 0.044 3.956 8 C 0.038 3.962 9 C -0.527 4.527 10 H 0.080 0.920 11 C -0.134 4.134 12 N -0.518 5.518 13 Si 0.720 3.280 14 H -0.201 1.201 15 H -0.213 1.213 16 H -0.202 1.202 17 C -0.242 4.242 18 C -0.184 4.184 19 C 0.039 3.961 20 H 0.106 0.894 21 C -0.191 4.191 22 C -0.193 4.193 23 C -0.032 4.032 24 O -0.277 6.277 25 H 0.083 0.917 26 H 0.093 0.907 27 H 0.082 0.918 28 H 0.092 0.908 29 H 0.055 0.945 30 H 0.071 0.929 31 H 0.099 0.901 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.105 0.895 35 H 0.103 0.897 36 H 0.102 0.898 37 H 0.096 0.904 38 H 0.100 0.900 39 H 0.100 0.900 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.583 -0.912 -15.988 17.314 hybrid contribution 0.547 0.905 0.217 1.079 sum -6.036 -0.007 -15.770 16.886 Atomic orbital electron populations 1.21733 0.92109 1.03177 1.02899 1.21421 0.98844 1.00635 0.90696 0.86885 1.23292 0.77980 0.83020 0.85732 1.90625 1.35864 1.25881 1.87645 1.86496 1.68874 1.55663 1.14388 1.22838 0.99182 0.91480 0.82146 1.18775 0.92790 0.95948 0.88704 1.20344 1.02690 0.89818 1.39833 0.91965 1.25010 0.96361 0.96782 0.95294 1.69990 1.10459 1.29364 1.42018 0.86652 0.77770 0.84692 0.78863 1.20143 1.21289 1.20176 1.22995 0.92341 1.03064 1.05836 1.22542 1.01176 0.96689 0.97972 1.22578 0.98259 0.82918 0.92336 0.89378 1.23264 1.02821 0.98456 0.94549 1.23249 1.01721 0.96024 0.98266 1.23411 0.95084 0.99495 0.85201 1.88612 1.65704 1.31408 1.42005 0.91681 0.90737 0.91751 0.90756 0.94491 0.92869 0.90122 0.91567 0.91670 0.89473 0.89728 0.89768 0.90397 0.90041 0.89990 0.92370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 8.66 37.15 0.32 -1.46 16 2 C -0.10 -1.41 2.65 -91.77 -0.24 -1.65 16 3 H 0.11 1.44 8.14 -51.93 -0.42 1.02 16 4 C 0.46 9.26 7.15 36.01 0.26 9.52 16 5 O -0.51 -11.75 15.24 -23.58 -0.36 -12.11 16 6 O -0.34 -7.70 10.06 -39.26 -0.39 -8.09 16 7 C 0.12 2.89 5.29 37.16 0.20 3.08 16 8 C 0.04 0.97 1.60 -155.66 -0.25 0.72 16 9 C -0.49 -13.48 8.77 -34.44 -0.30 -13.78 16 10 H 0.06 1.71 7.82 -52.49 -0.41 1.30 16 11 C 0.07 1.89 5.39 -17.82 -0.10 1.80 16 12 N -0.88 -25.19 12.92 55.43 0.72 -24.48 16 13 Si 0.89 21.17 29.54 -169.99 -5.02 16.14 16 14 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 15 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 16 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 17 C -0.21 -4.57 9.96 -26.69 -0.27 -4.83 16 18 C -0.15 -3.47 9.43 -26.69 -0.25 -3.73 16 19 C 0.10 1.28 2.74 -26.00 -0.07 1.21 16 20 H 0.09 1.27 7.95 -51.93 -0.41 0.86 16 21 C -0.15 -1.37 6.36 -24.78 -0.16 -1.53 16 22 C -0.15 -1.24 7.16 -24.48 -0.18 -1.41 16 23 C 0.04 0.46 7.71 38.18 0.29 0.75 16 24 O -0.36 -5.34 9.46 -47.68 -0.45 -5.79 16 25 H 0.06 0.88 7.54 -51.93 -0.39 0.48 16 26 H 0.07 0.99 8.11 -51.93 -0.42 0.57 16 27 H 0.06 0.61 6.35 -51.93 -0.33 0.28 16 28 H 0.07 2.03 8.13 -51.93 -0.42 1.60 16 29 H 0.04 0.88 8.08 -51.93 -0.42 0.46 16 30 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 31 H 0.08 1.75 8.14 -51.93 -0.42 1.32 16 32 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 33 H 0.06 1.46 8.14 -51.93 -0.42 1.03 16 34 H 0.09 2.16 8.14 -51.93 -0.42 1.74 16 35 H 0.08 0.67 6.07 -51.93 -0.32 0.35 16 36 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 LS Contribution 331.20 15.07 4.99 4.99 Total: -1.00 -31.72 331.20 -7.75 -39.47 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -6.49 Total: 1.18 kcal Atomic # 6 Polarization: -10.57 SS G_CDS: -0.74 Total: -11.31 kcal Atomic # 7 Polarization: -25.19 SS G_CDS: 0.72 Total: -24.48 kcal Atomic # 8 Polarization: -24.79 SS G_CDS: -1.21 Total: -26.00 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.72 -7.75 -39.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000923061325.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.549 kcal (2) G-P(sol) polarization free energy of solvation -31.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds