Wall clock time and date at job start Mon Mar 30 2020 07:26:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09003 * 109.47263 * 2 1 4 4 C 1.50704 * 109.47403 * 120.00207 * 2 1 3 5 5 O 1.20821 * 120.00203 * 120.00129 * 4 2 1 6 6 O 1.34231 * 119.99730 * 299.99759 * 4 2 1 7 7 C 1.45194 * 117.00083 * 179.97438 * 6 4 2 8 8 C 1.52997 * 109.47567 * 180.02562 * 7 6 4 9 9 C 1.50710 * 115.54677 * 294.88399 * 8 7 6 10 10 H 1.07995 * 119.99486 * 95.16704 * 9 8 7 11 11 C 1.37867 * 119.99965 * 275.16867 * 9 8 7 12 12 N 1.31510 * 120.00312 * 5.80704 * 11 9 8 13 13 Si 1.86805 * 119.99741 * 186.08921 * 11 9 8 14 14 H 1.48499 * 109.47321 * 59.99871 * 13 11 9 15 15 H 1.48501 * 109.47114 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.46952 * 299.99526 * 13 11 9 17 17 C 1.53001 * 117.49997 * 80.55150 * 8 7 6 18 18 C 1.53003 * 117.50530 * 149.21606 * 8 7 6 19 19 C 1.53005 * 109.47309 * 240.00029 * 2 1 3 20 20 H 1.08997 * 109.82608 * 185.56532 * 19 2 1 21 21 C 1.54383 * 109.82825 * 64.58545 * 19 2 1 22 22 C 1.55305 * 102.25053 * 219.13331 * 21 19 2 23 23 C 1.54944 * 100.94493 * 34.13475 * 22 21 19 24 24 O 1.43236 * 109.82964 * 306.45403 * 19 2 1 25 25 H 1.09003 * 109.47263 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47124 * 299.99928 * 1 2 3 27 27 H 1.09000 * 109.47289 * 60.00159 * 1 2 3 28 28 H 1.09003 * 109.47372 * 59.99874 * 7 6 4 29 29 H 1.09004 * 109.47325 * 300.00330 * 7 6 4 30 30 H 0.97000 * 120.00155 * 180.02562 * 12 11 9 31 31 H 1.08999 * 117.49526 * 215.00570 * 17 8 7 32 32 H 1.08996 * 117.49609 * 0.02830 * 17 8 7 33 33 H 1.09002 * 117.49337 * 359.97438 * 18 8 7 34 34 H 1.08996 * 117.50010 * 144.99543 * 18 8 7 35 35 H 1.09003 * 110.84598 * 337.32498 * 21 19 2 36 36 H 1.09001 * 110.84401 * 100.93977 * 21 19 2 37 37 H 1.08996 * 111.12189 * 276.21177 * 22 21 19 38 38 H 1.08996 * 111.12465 * 152.05603 * 22 21 19 39 39 H 1.09001 * 110.30839 * 204.63991 * 23 22 21 40 40 H 1.08996 * 110.31085 * 82.46834 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2305 5 8 2.7270 -1.6928 1.1196 6 8 1.7081 -0.2518 2.4496 7 6 2.2268 -0.9863 3.5896 8 6 1.7549 -0.3198 4.8834 9 6 2.2824 1.0706 5.1281 10 1 1.6961 1.9295 4.8370 11 6 3.5135 1.2459 5.7236 12 7 4.2771 0.2049 5.9740 13 14 4.0934 2.9615 6.1819 14 1 3.1392 3.5655 7.1461 15 1 5.4394 2.8793 6.8039 16 1 4.1626 3.8033 4.9605 17 6 0.3352 -0.6310 5.3613 18 6 1.5388 -1.2181 6.1030 19 6 2.0400 -0.7213 -1.2493 20 1 3.1254 -0.8115 -1.2068 21 6 1.6269 0.0640 -2.5127 22 6 1.2539 -1.0744 -3.5010 23 6 0.6555 -2.1229 -2.5297 24 8 1.4472 -2.0223 -1.3352 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 3.3163 -0.9861 3.5568 29 1 1.8626 -2.0132 3.5566 30 1 5.1430 0.3282 6.3933 31 1 -0.2173 0.1698 5.8528 32 1 -0.2624 -1.3110 4.7543 33 1 1.7324 -2.2841 5.9834 34 1 1.7781 -0.8036 7.0822 35 1 0.7650 0.6996 -2.3098 36 1 2.4620 0.6513 -2.8946 37 1 2.1391 -1.4643 -4.0032 38 1 0.5102 -0.7391 -4.2238 39 1 0.7378 -3.1231 -2.9551 40 1 -0.3866 -1.8873 -2.3138 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000923061325.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:58 Heat of formation + Delta-G solvation = -134.819062 kcal Electronic energy + Delta-G solvation = -21147.345478 eV Core-core repulsion = 17927.076943 eV Total energy + Delta-G solvation = -3220.268535 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.68118 -40.29954 -38.55166 -36.89456 -34.80237 -34.03186 -32.87492 -29.40984 -28.65162 -27.36885 -25.74694 -23.33833 -22.95756 -22.34106 -21.19993 -20.69066 -18.54340 -18.29146 -17.88495 -17.27389 -16.97092 -16.77492 -16.57084 -15.74251 -15.46373 -14.98540 -14.70075 -14.44114 -13.90085 -13.84306 -13.55591 -13.12099 -12.95629 -12.87955 -12.80332 -12.67437 -12.48512 -12.41086 -12.13243 -12.09823 -11.98989 -11.65041 -11.63486 -11.52487 -11.18717 -10.79348 -10.50502 -10.44502 -10.09361 -8.13845 -6.25904 1.31847 1.42638 1.44051 1.51809 1.83571 2.42358 2.94333 3.14946 3.40187 3.49889 3.68568 3.83053 3.97356 4.03606 4.13562 4.17949 4.34791 4.37839 4.40503 4.46033 4.62111 4.64793 4.75889 4.85221 4.86766 4.93712 4.94552 4.97125 5.00594 5.10020 5.15657 5.21649 5.39118 5.44448 5.56052 5.73136 5.75377 6.18928 6.34788 6.79350 6.89553 7.43008 8.95122 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.026948 B = 0.004649 C = 0.004345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.780075 B = 6021.972228 C = 6442.285719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.092 4.092 3 H 0.135 0.865 4 C 0.449 3.551 5 O -0.546 6.546 6 O -0.347 6.347 7 C 0.130 3.870 8 C 0.005 3.995 9 C -0.504 4.504 10 H 0.057 0.943 11 C 0.021 3.979 12 N -0.912 5.912 13 Si 0.955 3.045 14 H -0.267 1.267 15 H -0.286 1.286 16 H -0.271 1.271 17 C -0.176 4.176 18 C -0.148 4.148 19 C 0.092 3.908 20 H 0.064 0.936 21 C -0.143 4.143 22 C -0.145 4.145 23 C 0.033 3.967 24 O -0.398 6.398 25 H 0.052 0.948 26 H 0.065 0.935 27 H 0.105 0.895 28 H 0.036 0.964 29 H 0.040 0.960 30 H 0.261 0.739 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.103 0.897 36 H 0.100 0.900 37 H 0.077 0.923 38 H 0.110 0.890 39 H 0.086 0.914 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.574 1.198 -18.037 20.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.111 4.111 3 H 0.153 0.847 4 C 0.293 3.707 5 O -0.436 6.436 6 O -0.262 6.262 7 C 0.056 3.944 8 C 0.004 3.996 9 C -0.542 4.542 10 H 0.076 0.924 11 C -0.179 4.179 12 N -0.550 5.550 13 Si 0.780 3.220 14 H -0.192 1.192 15 H -0.211 1.211 16 H -0.196 1.196 17 C -0.213 4.213 18 C -0.186 4.186 19 C 0.034 3.966 20 H 0.082 0.918 21 C -0.181 4.181 22 C -0.183 4.183 23 C -0.043 4.043 24 O -0.317 6.317 25 H 0.071 0.929 26 H 0.084 0.916 27 H 0.123 0.877 28 H 0.055 0.945 29 H 0.058 0.942 30 H 0.070 0.930 31 H 0.107 0.893 32 H 0.106 0.894 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.122 0.878 36 H 0.118 0.882 37 H 0.096 0.904 38 H 0.129 0.871 39 H 0.104 0.896 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.170 0.685 -17.782 19.581 hybrid contribution 1.022 0.334 0.720 1.294 sum -7.148 1.019 -17.062 18.526 Atomic orbital electron populations 1.21730 0.90105 1.02870 1.04471 1.21693 1.00350 1.01021 0.88006 0.84715 1.24616 0.77015 0.82849 0.86203 1.90600 1.37456 1.27670 1.87903 1.86513 1.68982 1.55742 1.14988 1.22440 0.96842 0.91888 0.83253 1.18883 0.95571 0.95719 0.89393 1.20602 1.03006 0.90710 1.39851 0.92437 1.25766 0.96452 1.00440 0.95220 1.70113 1.10697 1.31365 1.42778 0.85658 0.77307 0.80238 0.78749 1.19194 1.21128 1.19587 1.23000 0.91099 1.02863 1.04317 1.22481 1.02411 0.96930 0.96769 1.22631 0.96964 0.83299 0.93664 0.91801 1.23272 1.04105 0.98481 0.92201 1.23245 1.02369 0.94693 0.97969 1.23676 0.95313 1.00774 0.84492 1.88579 1.66477 1.32411 1.44272 0.92911 0.91591 0.87694 0.94541 0.94198 0.93014 0.89301 0.89363 0.90741 0.90990 0.87844 0.88185 0.90388 0.87141 0.89586 0.91171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.08 8.66 71.98 0.62 -2.46 16 2 C -0.09 -2.57 2.65 -11.54 -0.03 -2.60 16 3 H 0.14 3.17 8.14 -2.39 -0.02 3.15 16 4 C 0.45 18.52 7.15 71.24 0.51 19.03 16 5 O -0.55 -26.13 15.24 26.60 0.41 -25.73 16 6 O -0.35 -16.02 10.06 -51.43 -0.52 -16.54 16 7 C 0.13 6.61 5.29 71.98 0.38 6.99 16 8 C 0.00 0.25 1.60 -52.92 -0.08 0.16 16 9 C -0.50 -28.01 8.77 25.60 0.22 -27.79 16 10 H 0.06 3.16 7.82 -2.91 -0.02 3.14 16 11 C 0.02 1.19 5.39 84.65 0.46 1.64 16 12 N -0.91 -53.25 12.92 21.44 0.28 -52.98 16 13 Si 0.96 43.53 29.54 68.60 2.03 45.56 16 14 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 15 H -0.29 -12.84 7.11 99.48 0.71 -12.14 16 16 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 17 C -0.18 -7.63 9.96 30.62 0.30 -7.33 16 18 C -0.15 -7.08 9.43 30.62 0.29 -6.79 16 19 C 0.09 2.35 2.74 31.07 0.08 2.44 16 20 H 0.06 1.88 7.95 -2.39 -0.02 1.86 16 21 C -0.14 -2.08 6.36 31.86 0.20 -1.88 16 22 C -0.15 -1.85 7.16 32.05 0.23 -1.62 16 23 C 0.03 0.62 7.71 72.65 0.56 1.18 16 24 O -0.40 -11.69 9.46 -137.08 -1.30 -12.99 16 25 H 0.05 1.34 7.54 -2.39 -0.02 1.32 16 26 H 0.07 1.63 8.11 -2.39 -0.02 1.61 16 27 H 0.10 1.54 6.35 -2.39 -0.02 1.53 16 28 H 0.04 2.09 8.13 -2.39 -0.02 2.07 16 29 H 0.04 1.95 8.08 -2.39 -0.02 1.93 16 30 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 31 H 0.09 3.70 8.14 -2.39 -0.02 3.68 16 32 H 0.09 3.43 8.14 -2.39 -0.02 3.41 16 33 H 0.07 3.35 8.14 -2.39 -0.02 3.33 16 34 H 0.07 3.61 8.14 -2.39 -0.02 3.60 16 35 H 0.10 1.12 6.07 -2.39 -0.01 1.11 16 36 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -70.77 331.20 5.65 -65.11 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: 1.01 Total: 16.58 kcal Atomic # 6 Polarization: -22.77 SS G_CDS: 3.75 Total: -19.03 kcal Atomic # 7 Polarization: -53.25 SS G_CDS: 0.28 Total: -52.98 kcal Atomic # 8 Polarization: -53.84 SS G_CDS: -1.41 Total: -55.25 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Total: -70.77 5.65 -65.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000923061325.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.706 kcal (2) G-P(sol) polarization free energy of solvation -70.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds