Wall clock time and date at job start Mon Mar 30 2020 07:27:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.46963 * 2 1 4 4 C 1.50701 * 109.47509 * 240.00233 * 2 1 3 5 5 O 1.20829 * 119.99852 * 240.00421 * 4 2 1 6 6 O 1.34225 * 119.99779 * 59.72376 * 4 2 1 7 7 C 1.45206 * 116.99929 * 180.27911 * 6 4 2 8 8 C 1.52998 * 109.47230 * 180.02562 * 7 6 4 9 9 C 1.50697 * 115.55145 * 39.88619 * 8 7 6 10 10 H 1.07997 * 120.00581 * 264.97688 * 9 8 7 11 11 C 1.37878 * 119.99728 * 84.97272 * 9 8 7 12 12 N 1.31522 * 120.00186 * 358.50652 * 11 9 8 13 13 Si 1.86802 * 120.00231 * 178.50802 * 11 9 8 14 14 H 1.48507 * 109.46685 * 0.02562 * 13 11 9 15 15 H 1.48501 * 109.47365 * 119.99678 * 13 11 9 16 16 H 1.48497 * 109.47146 * 240.00401 * 13 11 9 17 17 C 1.53001 * 117.49726 * 254.18270 * 8 7 6 18 18 C 1.52998 * 117.49574 * 185.56117 * 8 7 6 19 19 C 1.52998 * 109.47022 * 119.99943 * 2 1 3 20 20 H 1.08999 * 110.27347 * 179.29941 * 19 2 1 21 21 C 1.54942 * 110.30924 * 301.39010 * 19 2 1 22 22 C 1.55418 * 100.89134 * 155.28471 * 21 19 2 23 23 C 1.54384 * 102.31102 * 325.99349 * 22 21 19 24 24 O 1.43239 * 107.58671 * 21.28305 * 23 22 21 25 25 H 1.09009 * 109.46821 * 59.99960 * 1 2 3 26 26 H 1.08999 * 109.47189 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47486 * 299.99818 * 1 2 3 28 28 H 1.09003 * 109.46655 * 299.99939 * 7 6 4 29 29 H 1.09006 * 109.47118 * 59.99613 * 7 6 4 30 30 H 0.96992 * 120.00163 * 180.02562 * 12 11 9 31 31 H 1.09003 * 117.49992 * 359.97438 * 17 8 7 32 32 H 1.09000 * 117.49938 * 145.01830 * 17 8 7 33 33 H 1.09001 * 117.49771 * 214.97791 * 18 8 7 34 34 H 1.09000 * 117.50040 * 359.97241 * 18 8 7 35 35 H 1.08996 * 111.12723 * 273.27501 * 21 19 2 36 36 H 1.08997 * 111.12602 * 37.44399 * 21 19 2 37 37 H 1.09005 * 110.88574 * 207.75293 * 22 21 19 38 38 H 1.09001 * 110.93244 * 84.25679 * 22 21 19 39 39 H 1.09000 * 109.82864 * 261.76912 * 23 22 21 40 40 H 1.09002 * 109.82686 * 140.79748 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 8 2.7270 -1.6928 -1.1196 6 8 1.7036 -0.2549 -2.4495 7 6 2.2180 -0.9925 -3.5896 8 6 1.7423 -0.3286 -4.8834 9 6 1.7457 1.1784 -4.8800 10 1 0.8445 1.7200 -4.6335 11 6 2.8996 1.8657 -5.1915 12 7 4.0049 1.2065 -5.4630 13 14 2.8933 3.7334 -5.2281 14 1 1.5359 4.2305 -4.8877 15 1 3.8720 4.2513 -4.2386 16 1 3.2668 4.2031 -6.5864 17 6 0.6355 -1.0312 -5.6723 18 6 2.0713 -1.0329 -6.2011 19 6 2.0399 -0.7212 1.2492 20 1 3.1297 -0.7397 1.2562 21 6 1.5056 -0.0266 2.5270 22 6 1.5604 -1.2005 3.5441 23 6 1.2325 -2.4205 2.6568 24 8 1.5183 -2.0586 1.3006 25 1 -0.3633 0.5139 -0.8901 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 3.3077 -0.9922 -3.5609 29 1 1.8539 -2.0193 -3.5524 30 1 4.8167 1.6901 -5.6817 31 1 0.2466 -1.9666 -5.2699 32 1 -0.0904 -0.4034 -6.1890 33 1 2.2899 -0.4063 -7.0658 34 1 2.6270 -1.9690 -6.1464 35 1 2.1590 0.7906 2.8324 36 1 0.4827 0.3224 2.3859 37 1 0.8090 -1.0746 4.3237 38 1 2.5558 -1.2931 3.9786 39 1 0.1780 -2.6776 2.7566 40 1 1.8506 -3.2687 2.9513 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000923061327.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:27:05 Heat of formation + Delta-G solvation = -114.751277 kcal Electronic energy + Delta-G solvation = -21207.877023 eV Core-core repulsion = 17988.478692 eV Total energy + Delta-G solvation = -3219.398331 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.19574 -38.97889 -36.68485 -35.07144 -33.77244 -32.04571 -31.90216 -28.22138 -26.84271 -25.33725 -24.67553 -22.14576 -21.43515 -21.08589 -19.37597 -19.16681 -17.05181 -16.73333 -16.38750 -15.81786 -15.47164 -15.23168 -14.61317 -14.49519 -13.95857 -13.89050 -13.36077 -12.93145 -12.66517 -12.21778 -11.90680 -11.84678 -11.74069 -11.60127 -11.46700 -11.14618 -10.98713 -10.96183 -10.82870 -10.73555 -10.47395 -10.26673 -9.78178 -9.67881 -9.43797 -9.37741 -8.86894 -8.42333 -8.08984 -6.01213 -4.05784 2.96807 3.29454 3.37582 3.41341 3.43885 3.81630 4.32557 4.42602 4.63853 4.76414 4.99632 5.04035 5.13473 5.21822 5.28738 5.34250 5.38707 5.53872 5.57855 5.64568 5.75797 5.83009 5.89648 6.01318 6.06219 6.09412 6.26701 6.38468 6.41136 6.55181 6.72395 6.82400 7.06406 7.09401 7.26063 7.43444 7.58179 7.91135 8.40614 8.65457 8.94806 9.58992 11.08573 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.023991 B = 0.005061 C = 0.004563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.817599 B = 5531.023262 C = 6134.372555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.084 4.084 3 H 0.116 0.884 4 C 0.456 3.544 5 O -0.514 6.514 6 O -0.325 6.325 7 C 0.118 3.882 8 C 0.035 3.965 9 C -0.478 4.478 10 H 0.063 0.937 11 C 0.067 3.933 12 N -0.884 5.884 13 Si 0.891 3.109 14 H -0.272 1.272 15 H -0.285 1.285 16 H -0.285 1.285 17 C -0.210 4.210 18 C -0.145 4.145 19 C 0.098 3.902 20 H 0.077 0.923 21 C -0.156 4.156 22 C -0.155 4.155 23 C 0.048 3.952 24 O -0.360 6.360 25 H 0.075 0.925 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.038 0.962 30 H 0.259 0.741 31 H 0.065 0.935 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.064 0.936 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.080 0.920 38 H 0.075 0.925 39 H 0.066 0.934 40 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.563 -2.268 15.316 16.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.103 4.103 3 H 0.134 0.866 4 C 0.298 3.702 5 O -0.403 6.403 6 O -0.240 6.240 7 C 0.045 3.955 8 C 0.035 3.965 9 C -0.516 4.516 10 H 0.081 0.919 11 C -0.135 4.135 12 N -0.521 5.521 13 Si 0.719 3.281 14 H -0.196 1.196 15 H -0.211 1.211 16 H -0.211 1.211 17 C -0.247 4.247 18 C -0.183 4.183 19 C 0.041 3.959 20 H 0.095 0.905 21 C -0.193 4.193 22 C -0.192 4.192 23 C -0.029 4.029 24 O -0.279 6.279 25 H 0.094 0.906 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.057 0.943 30 H 0.069 0.931 31 H 0.084 0.916 32 H 0.099 0.901 33 H 0.106 0.894 34 H 0.082 0.918 35 H 0.103 0.897 36 H 0.106 0.894 37 H 0.098 0.902 38 H 0.094 0.906 39 H 0.084 0.916 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.193 -2.669 15.058 16.150 hybrid contribution 0.404 0.951 0.110 1.039 sum -4.789 -1.718 15.168 15.999 Atomic orbital electron populations 1.21751 0.91896 1.03300 1.02974 1.21147 0.98945 1.00383 0.89856 0.86611 1.23296 0.77994 0.82971 0.85889 1.90618 1.36069 1.25907 1.87725 1.86562 1.68446 1.55047 1.13952 1.22677 0.98479 0.91325 0.83064 1.18794 0.96643 0.94527 0.86562 1.20336 0.96578 0.88067 1.46573 0.91915 1.24993 0.95504 0.98208 0.94794 1.70011 1.00306 1.35115 1.46710 0.86543 0.78128 0.85861 0.77537 1.19604 1.21084 1.21074 1.23111 0.92624 1.01134 1.07814 1.22515 0.95584 1.00283 0.99908 1.22774 0.98127 0.82271 0.92768 0.90494 1.23454 1.03158 0.98374 0.94341 1.23119 1.02753 0.94811 0.98547 1.23101 1.00361 0.96994 0.82416 1.88579 1.84407 1.30146 1.24807 0.90622 0.91598 0.91619 0.91480 0.94345 0.93122 0.91603 0.90107 0.89399 0.91754 0.89677 0.89436 0.90159 0.90624 0.91610 0.91717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 8.68 37.16 0.32 -1.55 16 2 C -0.08 -1.27 2.79 -91.77 -0.26 -1.53 16 3 H 0.12 1.55 8.14 -51.93 -0.42 1.13 16 4 C 0.46 9.40 7.14 36.01 0.26 9.66 16 5 O -0.51 -11.85 15.18 -24.38 -0.37 -12.22 16 6 O -0.33 -7.55 9.50 -39.24 -0.37 -7.92 16 7 C 0.12 2.89 5.53 37.16 0.21 3.10 16 8 C 0.04 0.89 1.81 -155.66 -0.28 0.61 16 9 C -0.48 -13.07 8.24 -34.44 -0.28 -13.36 16 10 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 11 C 0.07 1.85 5.41 -17.82 -0.10 1.76 16 12 N -0.88 -25.23 12.80 55.43 0.71 -24.52 16 13 Si 0.89 21.12 29.54 -169.99 -5.02 16.10 16 14 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 15 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 16 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 17 C -0.21 -4.65 9.88 -26.73 -0.26 -4.91 16 18 C -0.15 -3.45 9.33 -26.73 -0.25 -3.70 16 19 C 0.10 1.34 2.66 -25.71 -0.07 1.27 16 20 H 0.08 1.12 8.10 -51.93 -0.42 0.70 16 21 C -0.16 -1.46 6.47 -24.42 -0.16 -1.62 16 22 C -0.15 -1.30 7.02 -24.72 -0.17 -1.47 16 23 C 0.05 0.52 7.80 37.88 0.30 0.82 16 24 O -0.36 -5.54 9.44 -50.98 -0.48 -6.02 16 25 H 0.07 1.06 8.11 -51.92 -0.42 0.64 16 26 H 0.06 0.93 7.65 -51.93 -0.40 0.53 16 27 H 0.07 0.66 6.09 -51.93 -0.32 0.34 16 28 H 0.07 1.78 8.13 -51.93 -0.42 1.36 16 29 H 0.04 0.89 7.94 -51.93 -0.41 0.48 16 30 H 0.26 7.06 8.31 -40.82 -0.34 6.73 16 31 H 0.07 1.33 8.08 -51.93 -0.42 0.91 16 32 H 0.08 1.74 8.14 -51.93 -0.42 1.32 16 33 H 0.09 2.19 8.14 -51.93 -0.42 1.77 16 34 H 0.06 1.43 8.14 -51.93 -0.42 1.01 16 35 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.09 0.75 5.82 -51.93 -0.30 0.45 16 37 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 329.87 15.07 4.97 4.97 Total: -1.00 -31.67 329.87 -7.78 -39.45 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: -6.46 Total: 1.09 kcal Atomic # 6 Polarization: -10.18 SS G_CDS: -0.75 Total: -10.93 kcal Atomic # 7 Polarization: -25.23 SS G_CDS: 0.71 Total: -24.52 kcal Atomic # 8 Polarization: -24.93 SS G_CDS: -1.22 Total: -26.16 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -31.67 -7.78 -39.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000923061327.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.300 kcal (2) G-P(sol) polarization free energy of solvation -31.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds