Wall clock time and date at job start Mon Mar 30 2020 07:27:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.46963 * 2 1 4 4 C 1.50701 * 109.47509 * 240.00233 * 2 1 3 5 5 O 1.20829 * 119.99852 * 240.00421 * 4 2 1 6 6 O 1.34225 * 119.99779 * 59.72376 * 4 2 1 7 7 C 1.45206 * 116.99929 * 180.27911 * 6 4 2 8 8 C 1.52998 * 109.47230 * 180.02562 * 7 6 4 9 9 C 1.50697 * 115.55145 * 39.88619 * 8 7 6 10 10 H 1.07997 * 120.00581 * 264.97688 * 9 8 7 11 11 C 1.37878 * 119.99728 * 84.97272 * 9 8 7 12 12 N 1.31522 * 120.00186 * 358.50652 * 11 9 8 13 13 Si 1.86802 * 120.00231 * 178.50802 * 11 9 8 14 14 H 1.48507 * 109.46685 * 0.02562 * 13 11 9 15 15 H 1.48501 * 109.47365 * 119.99678 * 13 11 9 16 16 H 1.48497 * 109.47146 * 240.00401 * 13 11 9 17 17 C 1.53001 * 117.49726 * 254.18270 * 8 7 6 18 18 C 1.52998 * 117.49574 * 185.56117 * 8 7 6 19 19 C 1.52998 * 109.47022 * 119.99943 * 2 1 3 20 20 H 1.08999 * 110.27347 * 179.29941 * 19 2 1 21 21 C 1.54942 * 110.30924 * 301.39010 * 19 2 1 22 22 C 1.55418 * 100.89134 * 155.28471 * 21 19 2 23 23 C 1.54384 * 102.31102 * 325.99349 * 22 21 19 24 24 O 1.43239 * 107.58671 * 21.28305 * 23 22 21 25 25 H 1.09009 * 109.46821 * 59.99960 * 1 2 3 26 26 H 1.08999 * 109.47189 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47486 * 299.99818 * 1 2 3 28 28 H 1.09003 * 109.46655 * 299.99939 * 7 6 4 29 29 H 1.09006 * 109.47118 * 59.99613 * 7 6 4 30 30 H 0.96992 * 120.00163 * 180.02562 * 12 11 9 31 31 H 1.09003 * 117.49992 * 359.97438 * 17 8 7 32 32 H 1.09000 * 117.49938 * 145.01830 * 17 8 7 33 33 H 1.09001 * 117.49771 * 214.97791 * 18 8 7 34 34 H 1.09000 * 117.50040 * 359.97241 * 18 8 7 35 35 H 1.08996 * 111.12723 * 273.27501 * 21 19 2 36 36 H 1.08997 * 111.12602 * 37.44399 * 21 19 2 37 37 H 1.09005 * 110.88574 * 207.75293 * 22 21 19 38 38 H 1.09001 * 110.93244 * 84.25679 * 22 21 19 39 39 H 1.09000 * 109.82864 * 261.76912 * 23 22 21 40 40 H 1.09002 * 109.82686 * 140.79748 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 8 2.7270 -1.6928 -1.1196 6 8 1.7036 -0.2549 -2.4495 7 6 2.2180 -0.9925 -3.5896 8 6 1.7423 -0.3286 -4.8834 9 6 1.7457 1.1784 -4.8800 10 1 0.8445 1.7200 -4.6335 11 6 2.8996 1.8657 -5.1915 12 7 4.0049 1.2065 -5.4630 13 14 2.8933 3.7334 -5.2281 14 1 1.5359 4.2305 -4.8877 15 1 3.8720 4.2513 -4.2386 16 1 3.2668 4.2031 -6.5864 17 6 0.6355 -1.0312 -5.6723 18 6 2.0713 -1.0329 -6.2011 19 6 2.0399 -0.7212 1.2492 20 1 3.1297 -0.7397 1.2562 21 6 1.5056 -0.0266 2.5270 22 6 1.5604 -1.2005 3.5441 23 6 1.2325 -2.4205 2.6568 24 8 1.5183 -2.0586 1.3006 25 1 -0.3633 0.5139 -0.8901 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 3.3077 -0.9922 -3.5609 29 1 1.8539 -2.0193 -3.5524 30 1 4.8167 1.6901 -5.6817 31 1 0.2466 -1.9666 -5.2699 32 1 -0.0904 -0.4034 -6.1890 33 1 2.2899 -0.4063 -7.0658 34 1 2.6270 -1.9690 -6.1464 35 1 2.1590 0.7906 2.8324 36 1 0.4827 0.3224 2.3859 37 1 0.8090 -1.0746 4.3237 38 1 2.5558 -1.2931 3.9786 39 1 0.1780 -2.6776 2.7566 40 1 1.8506 -3.2687 2.9513 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000923061327.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:27:05 Heat of formation + Delta-G solvation = -132.321723 kcal Electronic energy + Delta-G solvation = -21208.638935 eV Core-core repulsion = 17988.478692 eV Total energy + Delta-G solvation = -3220.160242 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.61688 -40.24199 -38.53397 -36.87650 -34.95126 -33.98912 -32.87767 -29.30007 -28.54912 -27.34122 -25.91898 -23.25709 -22.94994 -22.35936 -21.21672 -20.65913 -18.59101 -18.15842 -17.88572 -17.28985 -16.94373 -16.64513 -16.52273 -15.71963 -15.43607 -15.07658 -14.73205 -14.39111 -14.06406 -13.91219 -13.54830 -13.07324 -12.89679 -12.85457 -12.79915 -12.70170 -12.49356 -12.33189 -12.12483 -12.09049 -11.98477 -11.64058 -11.57596 -11.47988 -11.12833 -10.86227 -10.46627 -10.42441 -10.01666 -8.09897 -6.20736 1.33775 1.42276 1.44354 1.56173 1.88443 2.45038 2.87887 3.19485 3.38188 3.49545 3.70831 3.81590 3.98064 4.03882 4.15896 4.16892 4.35433 4.37264 4.38814 4.45478 4.59102 4.64661 4.77731 4.85793 4.88987 4.93258 4.95604 4.96832 4.99145 5.11274 5.15323 5.22194 5.38176 5.41264 5.58188 5.76437 5.79696 6.17629 6.37255 6.82766 6.94202 7.47249 8.99705 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.023991 B = 0.005061 C = 0.004563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.817599 B = 5531.023262 C = 6134.372555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.081 4.081 3 H 0.136 0.864 4 C 0.447 3.553 5 O -0.545 6.545 6 O -0.338 6.338 7 C 0.129 3.871 8 C 0.001 3.999 9 C -0.489 4.489 10 H 0.057 0.943 11 C 0.020 3.980 12 N -0.915 5.915 13 Si 0.954 3.046 14 H -0.262 1.262 15 H -0.283 1.283 16 H -0.281 1.281 17 C -0.181 4.181 18 C -0.148 4.148 19 C 0.092 3.908 20 H 0.057 0.943 21 C -0.145 4.145 22 C -0.146 4.146 23 C 0.036 3.964 24 O -0.398 6.398 25 H 0.064 0.936 26 H 0.053 0.947 27 H 0.105 0.895 28 H 0.034 0.966 29 H 0.046 0.954 30 H 0.259 0.741 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.104 0.896 36 H 0.102 0.898 37 H 0.107 0.893 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.111 -1.048 17.194 18.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.100 4.100 3 H 0.153 0.847 4 C 0.292 3.708 5 O -0.436 6.436 6 O -0.253 6.253 7 C 0.054 3.946 8 C 0.001 3.999 9 C -0.526 4.526 10 H 0.075 0.925 11 C -0.179 4.179 12 N -0.554 5.554 13 Si 0.780 3.220 14 H -0.186 1.186 15 H -0.209 1.209 16 H -0.207 1.207 17 C -0.218 4.218 18 C -0.185 4.185 19 C 0.035 3.965 20 H 0.075 0.925 21 C -0.182 4.182 22 C -0.183 4.183 23 C -0.040 4.040 24 O -0.318 6.318 25 H 0.083 0.917 26 H 0.072 0.928 27 H 0.124 0.876 28 H 0.052 0.948 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.108 0.892 32 H 0.106 0.894 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.123 0.877 36 H 0.120 0.880 37 H 0.126 0.874 38 H 0.099 0.901 39 H 0.096 0.904 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -6.760 -1.451 16.949 18.305 hybrid contribution 0.888 0.482 -0.450 1.106 sum -5.873 -0.968 16.498 17.539 Atomic orbital electron populations 1.21738 0.90049 1.02933 1.04395 1.21409 1.00340 1.00767 0.87450 0.84655 1.24553 0.77101 0.82850 0.86321 1.90591 1.37513 1.27537 1.87962 1.86574 1.68677 1.55340 1.14709 1.22379 0.96441 0.91919 0.83812 1.18937 0.99507 0.94171 0.87296 1.20553 0.96417 0.89356 1.46322 0.92489 1.25732 0.95116 1.02572 0.94519 1.70131 1.00797 1.36743 1.47703 0.85564 0.78407 0.80567 0.77508 1.18620 1.20882 1.20727 1.23122 0.91645 1.01524 1.05511 1.22433 0.97322 1.00185 0.98577 1.22843 0.97218 0.82493 0.93969 0.92456 1.23458 1.04079 0.98827 0.91822 1.23119 1.03982 0.92806 0.98381 1.23347 1.01153 0.98251 0.81222 1.88544 1.84519 1.31151 1.27624 0.91727 0.92830 0.87617 0.94795 0.93546 0.93225 0.89207 0.89377 0.91145 0.90820 0.87720 0.87973 0.87416 0.90142 0.90375 0.91850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.28 8.68 71.98 0.62 -2.65 16 2 C -0.08 -2.37 2.79 -11.54 -0.03 -2.40 16 3 H 0.14 3.40 8.14 -2.39 -0.02 3.38 16 4 C 0.45 18.78 7.14 71.24 0.51 19.29 16 5 O -0.55 -26.05 15.18 27.33 0.42 -25.63 16 6 O -0.34 -15.98 9.50 -51.37 -0.49 -16.47 16 7 C 0.13 6.46 5.53 71.98 0.40 6.86 16 8 C 0.00 0.07 1.81 -52.93 -0.10 -0.03 16 9 C -0.49 -26.90 8.24 25.60 0.21 -26.69 16 10 H 0.06 3.12 7.81 -2.91 -0.02 3.10 16 11 C 0.02 1.10 5.41 84.65 0.46 1.56 16 12 N -0.92 -53.25 12.80 21.45 0.27 -52.97 16 13 Si 0.95 43.35 29.54 68.60 2.03 45.37 16 14 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 15 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 16 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 17 C -0.18 -7.83 9.88 30.60 0.30 -7.53 16 18 C -0.15 -7.05 9.33 30.59 0.29 -6.76 16 19 C 0.09 2.42 2.66 31.26 0.08 2.50 16 20 H 0.06 1.68 8.10 -2.39 -0.02 1.66 16 21 C -0.14 -2.22 6.47 32.09 0.21 -2.02 16 22 C -0.15 -1.97 7.02 31.90 0.22 -1.75 16 23 C 0.04 0.73 7.80 72.45 0.56 1.30 16 24 O -0.40 -12.08 9.44 -133.92 -1.26 -13.34 16 25 H 0.06 1.72 8.11 -2.38 -0.02 1.70 16 26 H 0.05 1.44 7.65 -2.39 -0.02 1.42 16 27 H 0.11 1.72 6.09 -2.39 -0.01 1.70 16 28 H 0.03 1.89 8.13 -2.39 -0.02 1.87 16 29 H 0.05 2.19 7.94 -2.38 -0.02 2.18 16 30 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 31 H 0.09 3.44 8.08 -2.39 -0.02 3.42 16 32 H 0.09 3.67 8.14 -2.39 -0.02 3.65 16 33 H 0.07 3.57 8.14 -2.39 -0.02 3.55 16 34 H 0.07 3.31 8.14 -2.39 -0.02 3.29 16 35 H 0.10 1.23 8.14 -2.39 -0.02 1.22 16 36 H 0.10 1.28 5.82 -2.39 -0.01 1.26 16 37 H 0.11 0.92 8.14 -2.38 -0.02 0.90 16 38 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 Total: -1.00 -70.15 329.87 5.71 -64.44 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: 1.01 Total: 16.93 kcal Atomic # 6 Polarization: -22.06 SS G_CDS: 3.74 Total: -18.32 kcal Atomic # 7 Polarization: -53.25 SS G_CDS: 0.27 Total: -52.97 kcal Atomic # 8 Polarization: -54.11 SS G_CDS: -1.34 Total: -55.45 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.37 kcal Total: -70.15 5.71 -64.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000923061327.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.881 kcal (2) G-P(sol) polarization free energy of solvation -70.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds