Wall clock time and date at job start Mon Mar 30 2020 07:09:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 120.00175 * 2 1 4 4 H 1.48504 * 109.47032 * 179.72499 * 3 2 1 5 5 H 1.48497 * 109.46816 * 299.72616 * 3 2 1 6 6 H 1.48495 * 109.46630 * 59.72404 * 3 2 1 7 7 C 1.37885 * 119.99913 * 179.72292 * 2 1 3 8 8 H 1.08000 * 119.99535 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99902 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47168 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47355 * 179.97438 * 10 9 7 12 12 O 1.45198 * 109.47301 * 179.97438 * 11 10 9 13 13 C 1.34226 * 117.00235 * 180.02562 * 12 11 10 14 14 O 1.20827 * 119.99724 * 0.02562 * 13 12 11 15 15 C 1.50697 * 119.99991 * 179.97438 * 13 12 11 16 16 H 1.09000 * 110.80203 * 62.17824 * 15 13 12 17 17 C 1.54805 * 110.91288 * 298.54603 * 15 13 12 18 18 C 1.54095 * 104.19283 * 220.92597 * 17 15 13 19 19 O 1.43744 * 107.29442 * 357.96555 * 18 17 15 20 20 C 1.44379 * 106.97162 * 26.51357 * 19 18 17 21 21 H 1.09007 * 110.61748 * 78.44050 * 20 19 18 22 22 C 1.53003 * 110.62079 * 201.43506 * 20 19 18 23 23 C 1.52998 * 117.49636 * 2.70133 * 22 20 19 24 24 C 1.52994 * 117.49771 * 294.07659 * 22 20 19 25 25 H 0.97001 * 119.99646 * 0.28069 * 1 2 3 26 26 H 1.08998 * 109.47224 * 299.99557 * 9 7 2 27 27 H 1.09002 * 109.47054 * 60.00069 * 9 7 2 28 28 H 1.09000 * 109.47339 * 299.99895 * 10 9 7 29 29 H 1.09002 * 109.46926 * 60.00175 * 10 9 7 30 30 H 1.09000 * 109.46966 * 300.00313 * 11 10 9 31 31 H 1.09002 * 109.46807 * 60.00291 * 11 10 9 32 32 H 1.09004 * 110.48518 * 339.60612 * 17 15 13 33 33 H 1.09003 * 110.48861 * 102.23975 * 17 15 13 34 34 H 1.08997 * 109.88135 * 117.39434 * 18 17 15 35 35 H 1.09001 * 109.87629 * 238.54697 * 18 17 15 36 36 H 1.08996 * 115.54763 * 148.40132 * 22 20 19 37 37 H 1.09005 * 117.49930 * 359.97438 * 23 22 20 38 38 H 1.08994 * 117.50090 * 145.01837 * 23 22 20 39 39 H 1.09008 * 117.49906 * 214.97408 * 24 22 20 40 40 H 1.09000 * 117.50176 * 359.97378 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0067 5 1 1.8955 2.3935 -1.2158 6 1 1.8854 2.3993 1.2091 7 6 2.0046 -1.1941 0.0058 8 1 3.0846 -1.1940 0.0062 9 6 1.2511 -2.4991 0.0115 10 6 2.2453 -3.6621 0.0166 11 6 1.4803 -4.9871 0.0231 12 8 2.4238 -6.0907 0.0273 13 6 1.9107 -7.3311 0.0327 14 8 0.7129 -7.4893 0.0333 15 6 2.8287 -8.5262 0.0367 16 1 3.4424 -8.5398 0.9374 17 6 3.7123 -8.5485 -1.2342 18 6 3.7358 -10.0315 -1.6521 19 8 2.9795 -10.7634 -0.6729 20 6 2.0233 -9.8428 -0.1047 21 1 1.1769 -9.7046 -0.7777 22 6 1.5499 -10.3346 1.2646 23 6 2.1804 -11.6170 1.8113 24 6 0.7358 -11.6293 1.3074 25 1 -0.4850 0.8401 -0.0041 26 1 0.6241 -2.5528 0.9015 27 1 0.6247 -2.5609 -0.8785 28 1 2.8719 -3.6083 -0.8736 29 1 2.8719 -3.6004 0.9064 30 1 0.8539 -5.0406 0.9135 31 1 0.8533 -5.0490 -0.8665 32 1 3.2667 -7.9378 -2.0195 33 1 4.7196 -8.2007 -1.0048 34 1 3.2792 -10.1469 -2.6351 35 1 4.7634 -10.3943 -1.6735 36 1 1.2930 -9.5546 1.9812 37 1 2.9322 -12.1105 1.1953 38 1 2.3385 -11.6807 2.8878 39 1 -0.0565 -11.7012 2.0526 40 1 0.5370 -12.1305 0.3601 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000923202982.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:59 Heat of formation + Delta-G solvation = -126.587823 kcal Electronic energy + Delta-G solvation = -20187.245896 eV Core-core repulsion = 16967.334295 eV Total energy + Delta-G solvation = -3219.911602 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.90780 -39.38713 -36.70130 -36.49163 -34.04306 -32.81938 -31.65356 -29.58379 -27.24383 -24.91230 -23.30948 -22.56178 -22.48503 -20.75664 -20.45596 -20.13813 -17.74270 -16.98774 -16.91587 -16.20895 -16.13707 -15.45151 -15.13542 -14.78404 -14.48721 -14.23214 -14.04841 -13.33744 -12.83940 -12.54862 -12.21383 -12.08565 -11.97458 -11.76233 -11.63989 -11.62263 -11.24000 -11.01099 -10.68677 -10.64810 -10.49007 -10.43555 -10.39417 -10.36195 -9.84834 -9.76555 -9.52858 -9.17775 -8.41699 -6.06195 -4.09311 2.21777 2.71290 3.28204 3.35706 3.39835 3.46261 3.60122 4.10688 4.26018 4.40851 4.55138 4.65338 4.73240 4.77791 4.94373 5.01552 5.05616 5.27813 5.29893 5.40550 5.50446 5.52764 5.53004 5.57118 5.62337 5.66387 5.75135 5.95013 5.96641 6.05506 6.43475 6.49668 6.55204 6.78935 6.94319 7.57260 7.67780 7.83558 7.92124 8.33015 8.97179 9.55200 11.05273 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.039662 B = 0.003000 C = 0.002876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.803931 B = 9331.194750 C = 9734.784802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.056 3.944 3 Si 0.895 3.105 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.521 4.521 8 H 0.058 0.942 9 C 0.024 3.976 10 C -0.109 4.109 11 C 0.067 3.933 12 O -0.355 6.355 13 C 0.467 3.533 14 O -0.505 6.505 15 C -0.113 4.113 16 H 0.124 0.876 17 C -0.144 4.144 18 C 0.048 3.952 19 O -0.367 6.367 20 C 0.126 3.874 21 H 0.089 0.911 22 C -0.153 4.153 23 C -0.166 4.166 24 C -0.172 4.172 25 H 0.261 0.739 26 H 0.019 0.981 27 H 0.019 0.981 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.084 0.916 33 H 0.094 0.906 34 H 0.063 0.937 35 H 0.090 0.910 36 H 0.116 0.884 37 H 0.105 0.895 38 H 0.091 0.909 39 H 0.094 0.906 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.677 -22.452 -0.231 23.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.723 3.277 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.076 0.924 9 C -0.014 4.014 10 C -0.146 4.146 11 C -0.006 4.006 12 O -0.271 6.271 13 C 0.310 3.690 14 O -0.394 6.394 15 C -0.132 4.132 16 H 0.142 0.858 17 C -0.182 4.182 18 C -0.029 4.029 19 O -0.287 6.287 20 C 0.069 3.931 21 H 0.107 0.893 22 C -0.172 4.172 23 C -0.203 4.203 24 C -0.209 4.209 25 H 0.071 0.929 26 H 0.038 0.962 27 H 0.038 0.962 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.102 0.898 33 H 0.112 0.888 34 H 0.081 0.919 35 H 0.108 0.892 36 H 0.134 0.866 37 H 0.124 0.876 38 H 0.110 0.890 39 H 0.113 0.887 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 6.184 -22.552 -0.181 23.385 hybrid contribution 0.197 1.379 -0.049 1.394 sum 6.381 -21.172 -0.230 22.114 Atomic orbital electron populations 1.69977 1.06093 1.26682 1.50576 1.25039 0.94885 0.99399 0.95177 0.86488 0.80086 0.83532 0.77626 1.19659 1.20957 1.20951 1.21206 0.93155 0.90657 1.50947 0.92372 1.19057 0.93839 0.90765 0.97692 1.21767 0.99932 0.90953 1.01974 1.23541 0.91221 0.83584 1.02209 1.86502 1.42686 1.15031 1.82890 1.23086 0.88198 0.84908 0.72851 1.90679 1.16676 1.86825 1.45172 1.22582 0.97023 0.91239 1.02381 0.85839 1.22912 1.01361 0.97738 0.96180 1.23175 0.97090 0.90249 0.92381 1.88877 1.50225 1.34152 1.55422 1.22407 0.91370 0.85107 0.94255 0.89345 1.22223 1.05795 0.92458 0.96676 1.22908 0.96511 1.00142 1.00771 1.22930 0.94648 1.00054 1.03242 0.92923 0.96220 0.96237 0.92139 0.92131 0.91437 0.91480 0.89770 0.88766 0.91893 0.89199 0.86639 0.87642 0.89005 0.88724 0.88624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.72 13.29 55.43 0.74 -25.98 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 4 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 5 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.52 -14.61 9.11 -34.44 -0.31 -14.93 16 8 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 9 C 0.02 0.60 4.97 -27.89 -0.14 0.46 16 10 C -0.11 -2.23 5.53 -26.73 -0.15 -2.38 16 11 C 0.07 1.22 5.47 37.16 0.20 1.43 16 12 O -0.35 -5.76 10.21 -39.25 -0.40 -6.16 16 13 C 0.47 6.87 7.16 36.00 0.26 7.12 16 14 O -0.51 -8.70 15.55 -18.75 -0.29 -8.99 16 15 C -0.11 -1.23 3.06 -89.77 -0.27 -1.51 16 16 H 0.12 1.19 8.06 -51.93 -0.42 0.77 16 17 C -0.14 -1.28 6.58 -25.21 -0.17 -1.45 16 18 C 0.05 0.39 7.70 37.73 0.29 0.68 16 19 O -0.37 -3.82 9.68 -35.23 -0.34 -4.16 16 20 C 0.13 1.39 2.74 -25.67 -0.07 1.32 16 21 H 0.09 1.09 7.53 -51.93 -0.39 0.70 16 22 C -0.15 -1.60 5.73 -90.62 -0.52 -2.12 16 23 C -0.17 -1.50 9.90 -26.73 -0.26 -1.76 16 24 C -0.17 -1.60 10.25 -26.73 -0.27 -1.88 16 25 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 26 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 30 H 0.07 1.24 8.13 -51.93 -0.42 0.82 16 31 H 0.07 1.23 8.13 -51.93 -0.42 0.80 16 32 H 0.08 0.79 7.85 -51.93 -0.41 0.39 16 33 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.12 1.26 8.13 -51.93 -0.42 0.83 16 37 H 0.11 0.99 7.07 -51.93 -0.37 0.62 16 38 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.09 0.79 8.14 -51.92 -0.42 0.37 16 40 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 LS Contribution 335.61 15.07 5.06 5.06 Total: -1.00 -31.04 335.61 -8.39 -39.44 By element: Atomic # 1 Polarization: 4.50 SS G_CDS: -6.62 Total: -2.12 kcal Atomic # 6 Polarization: -11.99 SS G_CDS: -1.51 Total: -13.50 kcal Atomic # 7 Polarization: -26.72 SS G_CDS: 0.74 Total: -25.98 kcal Atomic # 8 Polarization: -18.28 SS G_CDS: -1.03 Total: -19.32 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.04 -8.39 -39.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000923202982.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.148 kcal (2) G-P(sol) polarization free energy of solvation -31.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds