Wall clock time and date at job start Mon Mar 30 2020 07:09:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 120.00175 * 2 1 4 4 H 1.48504 * 109.47032 * 179.72499 * 3 2 1 5 5 H 1.48497 * 109.46816 * 299.72616 * 3 2 1 6 6 H 1.48495 * 109.46630 * 59.72404 * 3 2 1 7 7 C 1.37885 * 119.99913 * 179.72292 * 2 1 3 8 8 H 1.08000 * 119.99535 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99902 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47168 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47355 * 179.97438 * 10 9 7 12 12 O 1.45198 * 109.47301 * 179.97438 * 11 10 9 13 13 C 1.34226 * 117.00235 * 180.02562 * 12 11 10 14 14 O 1.20827 * 119.99724 * 0.02562 * 13 12 11 15 15 C 1.50697 * 119.99991 * 179.97438 * 13 12 11 16 16 H 1.09000 * 110.80203 * 62.17824 * 15 13 12 17 17 C 1.54805 * 110.91288 * 298.54603 * 15 13 12 18 18 C 1.54095 * 104.19283 * 220.92597 * 17 15 13 19 19 O 1.43744 * 107.29442 * 357.96555 * 18 17 15 20 20 C 1.44379 * 106.97162 * 26.51357 * 19 18 17 21 21 H 1.09007 * 110.61748 * 78.44050 * 20 19 18 22 22 C 1.53003 * 110.62079 * 201.43506 * 20 19 18 23 23 C 1.52998 * 117.49636 * 2.70133 * 22 20 19 24 24 C 1.52994 * 117.49771 * 294.07659 * 22 20 19 25 25 H 0.97001 * 119.99646 * 0.28069 * 1 2 3 26 26 H 1.08998 * 109.47224 * 299.99557 * 9 7 2 27 27 H 1.09002 * 109.47054 * 60.00069 * 9 7 2 28 28 H 1.09000 * 109.47339 * 299.99895 * 10 9 7 29 29 H 1.09002 * 109.46926 * 60.00175 * 10 9 7 30 30 H 1.09000 * 109.46966 * 300.00313 * 11 10 9 31 31 H 1.09002 * 109.46807 * 60.00291 * 11 10 9 32 32 H 1.09004 * 110.48518 * 339.60612 * 17 15 13 33 33 H 1.09003 * 110.48861 * 102.23975 * 17 15 13 34 34 H 1.08997 * 109.88135 * 117.39434 * 18 17 15 35 35 H 1.09001 * 109.87629 * 238.54697 * 18 17 15 36 36 H 1.08996 * 115.54763 * 148.40132 * 22 20 19 37 37 H 1.09005 * 117.49930 * 359.97438 * 23 22 20 38 38 H 1.08994 * 117.50090 * 145.01837 * 23 22 20 39 39 H 1.09008 * 117.49906 * 214.97408 * 24 22 20 40 40 H 1.09000 * 117.50176 * 359.97378 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0067 5 1 1.8955 2.3935 -1.2158 6 1 1.8854 2.3993 1.2091 7 6 2.0046 -1.1941 0.0058 8 1 3.0846 -1.1940 0.0062 9 6 1.2511 -2.4991 0.0115 10 6 2.2453 -3.6621 0.0166 11 6 1.4803 -4.9871 0.0231 12 8 2.4238 -6.0907 0.0273 13 6 1.9107 -7.3311 0.0327 14 8 0.7129 -7.4893 0.0333 15 6 2.8287 -8.5262 0.0367 16 1 3.4424 -8.5398 0.9374 17 6 3.7123 -8.5485 -1.2342 18 6 3.7358 -10.0315 -1.6521 19 8 2.9795 -10.7634 -0.6729 20 6 2.0233 -9.8428 -0.1047 21 1 1.1769 -9.7046 -0.7777 22 6 1.5499 -10.3346 1.2646 23 6 2.1804 -11.6170 1.8113 24 6 0.7358 -11.6293 1.3074 25 1 -0.4850 0.8401 -0.0041 26 1 0.6241 -2.5528 0.9015 27 1 0.6247 -2.5609 -0.8785 28 1 2.8719 -3.6083 -0.8736 29 1 2.8719 -3.6004 0.9064 30 1 0.8539 -5.0406 0.9135 31 1 0.8533 -5.0490 -0.8665 32 1 3.2667 -7.9378 -2.0195 33 1 4.7196 -8.2007 -1.0048 34 1 3.2792 -10.1469 -2.6351 35 1 4.7634 -10.3943 -1.6735 36 1 1.2930 -9.5546 1.9812 37 1 2.9322 -12.1105 1.1953 38 1 2.3385 -11.6807 2.8878 39 1 -0.0565 -11.7012 2.0526 40 1 0.5370 -12.1305 0.3601 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000923202982.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:58 Heat of formation + Delta-G solvation = -143.201151 kcal Electronic energy + Delta-G solvation = -20187.966304 eV Core-core repulsion = 16967.334295 eV Total energy + Delta-G solvation = -3220.632010 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.99598 -40.38426 -37.85990 -37.43367 -35.95987 -33.93698 -33.38037 -30.34636 -29.08061 -26.15485 -24.80046 -23.53017 -23.20949 -22.19454 -21.69358 -21.16609 -18.90413 -18.59510 -17.97180 -17.77386 -17.31720 -16.50520 -16.23312 -15.97832 -15.83162 -15.47977 -14.94331 -14.62593 -14.18951 -13.93260 -13.76603 -13.68830 -13.18847 -12.85884 -12.60205 -12.51480 -12.46647 -12.34462 -12.31441 -12.11475 -12.05158 -11.73240 -11.44795 -11.40891 -11.24179 -11.18451 -11.12426 -10.61278 -10.59169 -8.23051 -6.34596 1.02936 1.40930 1.41281 1.49963 1.55725 2.40441 2.66442 2.83728 3.11054 3.32744 3.43253 3.57216 3.89890 3.95740 3.97961 4.02696 4.04093 4.11658 4.18447 4.30464 4.38568 4.52592 4.72198 4.77443 4.80569 4.81584 4.83499 4.90331 4.98555 5.04277 5.05881 5.20215 5.33901 5.37816 5.49258 5.61948 5.78886 5.79327 6.17668 6.58877 6.81680 7.35166 8.89376 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.039662 B = 0.003000 C = 0.002876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.803931 B = 9331.194750 C = 9734.784802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.002 4.002 3 Si 0.969 3.031 4 H -0.259 1.259 5 H -0.278 1.278 6 H -0.279 1.279 7 C -0.542 4.542 8 H 0.066 0.934 9 C 0.025 3.975 10 C -0.093 4.093 11 C 0.077 3.923 12 O -0.353 6.353 13 C 0.468 3.532 14 O -0.534 6.534 15 C -0.108 4.108 16 H 0.142 0.858 17 C -0.141 4.141 18 C 0.045 3.955 19 O -0.374 6.374 20 C 0.129 3.871 21 H 0.069 0.931 22 C -0.171 4.171 23 C -0.152 4.152 24 C -0.174 4.174 25 H 0.264 0.736 26 H -0.004 1.004 27 H -0.004 1.004 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.076 0.924 33 H 0.114 0.886 34 H 0.068 0.932 35 H 0.114 0.886 36 H 0.108 0.892 37 H 0.104 0.896 38 H 0.106 0.894 39 H 0.103 0.897 40 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.840 -23.049 -0.157 24.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.200 4.200 3 Si 0.793 3.207 4 H -0.183 1.183 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.580 4.580 8 H 0.084 0.916 9 C -0.012 4.012 10 C -0.131 4.131 11 C 0.003 3.997 12 O -0.269 6.269 13 C 0.312 3.688 14 O -0.423 6.423 15 C -0.127 4.127 16 H 0.160 0.840 17 C -0.179 4.179 18 C -0.031 4.031 19 O -0.293 6.293 20 C 0.072 3.928 21 H 0.087 0.913 22 C -0.189 4.189 23 C -0.189 4.189 24 C -0.211 4.211 25 H 0.073 0.927 26 H 0.015 0.985 27 H 0.015 0.985 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.095 0.905 33 H 0.133 0.867 34 H 0.086 0.914 35 H 0.132 0.868 36 H 0.126 0.874 37 H 0.123 0.877 38 H 0.124 0.876 39 H 0.121 0.879 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 8.367 -23.172 -0.112 24.636 hybrid contribution -0.508 1.492 -0.092 1.579 sum 7.859 -21.680 -0.204 23.061 Atomic orbital electron populations 1.70108 1.07897 1.27882 1.51514 1.26020 0.95788 1.03552 0.94597 0.85336 0.79148 0.78446 0.77746 1.18295 1.20395 1.20435 1.21653 0.93767 0.91837 1.50763 0.91621 1.18940 0.94281 0.92533 0.95439 1.21454 0.98706 0.90280 1.02633 1.23160 0.90981 0.83687 1.01830 1.86488 1.41921 1.15284 1.83192 1.23862 0.88482 0.84958 0.71494 1.90673 1.18215 1.86973 1.46462 1.22695 0.96689 0.88982 1.04318 0.84028 1.22972 1.01804 0.98361 0.94755 1.23362 0.98190 0.89491 0.92060 1.88874 1.50182 1.34341 1.55939 1.22255 0.91004 0.85356 0.94220 0.91335 1.22222 1.07304 0.92897 0.96472 1.22939 0.96013 0.98432 1.01507 1.23004 0.95360 0.99210 1.03513 0.92676 0.98531 0.98516 0.91346 0.91431 0.91924 0.91925 0.90511 0.86744 0.91350 0.86753 0.87436 0.87742 0.87608 0.87878 0.88819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.65 13.29 21.45 0.28 -56.37 16 2 C 0.00 -0.10 5.46 84.66 0.46 0.36 16 3 Si 0.97 43.73 29.54 68.60 2.03 45.75 16 4 H -0.26 -11.05 7.11 99.48 0.71 -10.35 16 5 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 6 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 7 C -0.54 -30.48 9.11 25.60 0.23 -30.25 16 8 H 0.07 3.51 7.74 -2.91 -0.02 3.48 16 9 C 0.03 1.32 4.97 29.85 0.15 1.47 16 10 C -0.09 -3.80 5.53 30.59 0.17 -3.63 16 11 C 0.08 2.81 5.47 71.98 0.39 3.21 16 12 O -0.35 -11.15 10.21 -51.38 -0.52 -11.68 16 13 C 0.47 13.53 7.16 71.23 0.51 14.03 16 14 O -0.53 -18.61 15.55 21.96 0.34 -18.27 16 15 C -0.11 -2.20 3.06 -10.24 -0.03 -2.23 16 16 H 0.14 2.42 8.06 -2.39 -0.02 2.40 16 17 C -0.14 -2.21 6.58 31.58 0.21 -2.00 16 18 C 0.05 0.63 7.70 72.35 0.56 1.18 16 19 O -0.37 -7.13 9.68 -148.98 -1.44 -8.57 16 20 C 0.13 2.75 2.74 31.28 0.09 2.83 16 21 H 0.07 1.71 7.53 -2.38 -0.02 1.69 16 22 C -0.17 -3.44 5.73 -10.80 -0.06 -3.50 16 23 C -0.15 -2.48 9.90 30.59 0.30 -2.18 16 24 C -0.17 -3.09 10.25 30.59 0.31 -2.78 16 25 H 0.26 15.01 8.31 -92.71 -0.77 14.23 16 26 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 27 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 28 H 0.07 2.67 8.14 -2.39 -0.02 2.66 16 29 H 0.07 2.65 8.14 -2.39 -0.02 2.64 16 30 H 0.06 2.34 8.13 -2.39 -0.02 2.32 16 31 H 0.06 2.33 8.13 -2.39 -0.02 2.31 16 32 H 0.08 1.33 7.85 -2.39 -0.02 1.31 16 33 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.11 2.31 8.13 -2.39 -0.02 2.29 16 37 H 0.10 1.75 7.07 -2.38 -0.02 1.73 16 38 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.10 1.62 8.14 -2.38 -0.02 1.60 16 40 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -66.53 335.61 4.98 -61.56 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: 1.00 Total: 11.06 kcal Atomic # 6 Polarization: -26.77 SS G_CDS: 3.29 Total: -23.48 kcal Atomic # 7 Polarization: -56.65 SS G_CDS: 0.28 Total: -56.37 kcal Atomic # 8 Polarization: -36.89 SS G_CDS: -1.62 Total: -38.51 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.75 kcal Total: -66.53 4.98 -61.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000923202982.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.646 kcal (2) G-P(sol) polarization free energy of solvation -66.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds