Wall clock time and date at job start Mon Mar 30 2020 06:58:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 120.00077 * 2 1 4 4 H 1.48501 * 109.47243 * 269.99746 * 3 2 1 5 5 H 1.48497 * 109.47198 * 29.99891 * 3 2 1 6 6 H 1.48508 * 109.47342 * 150.00012 * 3 2 1 7 7 C 1.37880 * 119.99984 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00284 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99849 * 359.97438 * 7 2 1 10 10 C 1.53007 * 109.46950 * 180.02562 * 9 7 2 11 11 O 1.45200 * 109.46866 * 180.02562 * 10 9 7 12 12 C 1.34235 * 116.99969 * 179.97438 * 11 10 9 13 13 O 1.20825 * 119.99758 * 0.02562 * 12 11 10 14 14 C 1.50699 * 120.00135 * 179.97438 * 12 11 10 15 15 C 1.53072 * 111.05147 * 300.96949 * 14 12 11 16 16 C 1.55066 * 102.92421 * 90.62566 * 15 14 12 17 17 O 1.45032 * 107.08731 * 1.94244 * 16 15 14 18 18 C 1.42307 * 105.23770 * 26.99565 * 17 16 15 19 19 H 1.09006 * 109.67947 * 71.83128 * 18 17 16 20 20 C 1.51480 * 117.61270 * 198.03673 * 18 17 16 21 21 C 1.53756 * 107.34877 * 179.23976 * 20 18 17 22 22 C 1.52581 * 111.35433 * 302.59558 * 21 20 18 23 23 C 1.51850 * 111.21087 * 171.07987 * 14 12 11 24 24 H 0.97004 * 119.99971 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.47335 * 60.00230 * 9 7 2 26 26 H 1.08999 * 109.47186 * 300.00478 * 9 7 2 27 27 H 1.09001 * 109.47185 * 60.00608 * 10 9 7 28 28 H 1.08997 * 109.46864 * 299.99827 * 10 9 7 29 29 H 1.09002 * 110.52123 * 332.39078 * 15 14 12 30 30 H 1.09000 * 111.16143 * 209.15611 * 15 14 12 31 31 H 1.09002 * 109.91582 * 242.58083 * 16 15 14 32 32 H 1.09006 * 110.07211 * 121.39576 * 16 15 14 33 33 H 1.09008 * 109.87439 * 59.78102 * 20 18 17 34 34 H 1.08997 * 109.88374 * 298.70657 * 20 18 17 35 35 H 1.09006 * 109.09034 * 63.05509 * 21 20 18 36 36 H 1.08999 * 109.09681 * 182.12839 * 21 20 18 37 37 H 1.08998 * 109.07943 * 175.21582 * 22 21 20 38 38 H 1.09003 * 109.07306 * 294.18846 * 22 21 20 39 39 H 1.08993 * 109.89815 * 62.84597 * 23 14 12 40 40 H 1.09002 * 109.89376 * 183.96104 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 8 1.5192 -4.9196 -0.0011 12 6 2.2503 -6.0454 -0.0018 13 8 3.4569 -5.9821 -0.0013 14 6 1.5661 -7.3881 -0.0018 15 6 0.6620 -7.5446 1.2234 16 6 -0.7021 -7.0066 0.7189 17 8 -0.5288 -6.6464 -0.6752 18 6 0.5220 -7.4808 -1.1494 19 1 0.1645 -8.5067 -1.2380 20 6 1.2202 -7.0714 -2.4298 21 6 2.3134 -8.1157 -2.7100 22 6 3.2907 -8.2236 -1.5432 23 6 2.5626 -8.5125 -0.2221 24 1 -0.4850 0.8401 -0.0004 25 1 0.6240 -2.5567 -0.8903 26 1 0.6246 -2.5570 0.8896 27 1 2.8719 -3.6044 0.8895 28 1 2.8719 -3.6044 -0.8905 29 1 1.0323 -6.9399 2.0513 30 1 0.5780 -8.5903 1.5195 31 1 -0.9913 -6.1284 1.2961 32 1 -1.4659 -7.7789 0.8107 33 1 1.6709 -6.0864 -2.3076 34 1 0.5053 -7.0533 -3.2524 35 1 1.8455 -9.0864 -2.8741 36 1 2.8603 -7.8273 -3.6076 37 1 3.9964 -9.0299 -1.7429 38 1 3.8393 -7.2863 -1.4502 39 1 3.2794 -8.5390 0.5986 40 1 2.0379 -9.4656 -0.2883 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000924226425.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:33 Heat of formation + Delta-G solvation = -146.296529 kcal Electronic energy + Delta-G solvation = -21853.166527 eV Core-core repulsion = 18632.400292 eV Total energy + Delta-G solvation = -3220.766235 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.46193 -38.88347 -36.71657 -35.54778 -33.30478 -32.79810 -30.35378 -29.72845 -28.78957 -25.33675 -23.62996 -22.79786 -22.16017 -21.04171 -20.72819 -19.36082 -17.25337 -16.33885 -16.13861 -16.07215 -15.84690 -15.39695 -14.85472 -14.52703 -14.14752 -14.00993 -13.31940 -13.26954 -12.83040 -12.73457 -12.33095 -12.10441 -12.05329 -11.77407 -11.30624 -11.25975 -11.13974 -10.96036 -10.80081 -10.71775 -10.61472 -10.55288 -10.11190 -9.93874 -9.57273 -9.54568 -9.46437 -9.23806 -8.40855 -6.06762 -4.11110 2.53340 3.17844 3.30242 3.36342 3.40799 3.68572 4.38957 4.40500 4.53104 4.60641 4.85452 4.88782 5.02836 5.05667 5.14281 5.22201 5.29512 5.32705 5.42349 5.58456 5.63665 5.69783 5.75067 5.82640 5.91790 5.98365 6.01995 6.12129 6.12815 6.14235 6.17567 6.39527 6.69531 6.92730 7.09606 7.61507 7.68995 7.91280 8.24722 8.33995 8.94619 9.52948 11.04634 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.027371 B = 0.004862 C = 0.004599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.743863 B = 5757.553636 C = 6086.684507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.061 3.939 3 Si 0.898 3.102 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.526 4.526 8 H 0.058 0.942 9 C 0.027 3.973 10 C 0.074 3.926 11 O -0.337 6.337 12 C 0.476 3.524 13 O -0.516 6.516 14 C -0.098 4.098 15 C -0.138 4.138 16 C 0.050 3.950 17 O -0.346 6.346 18 C 0.091 3.909 19 H 0.072 0.928 20 C -0.119 4.119 21 C -0.114 4.114 22 C -0.140 4.140 23 C -0.088 4.088 24 H 0.263 0.737 25 H 0.029 0.971 26 H 0.027 0.973 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.093 0.907 32 H 0.062 0.938 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.062 0.938 36 H 0.070 0.930 37 H 0.064 0.936 38 H 0.089 0.911 39 H 0.075 0.925 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.946 -19.719 -1.020 19.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.141 4.141 3 Si 0.726 3.274 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.565 4.565 8 H 0.076 0.924 9 C -0.010 4.010 10 C 0.001 3.999 11 O -0.253 6.253 12 C 0.319 3.681 13 O -0.406 6.406 14 C -0.100 4.100 15 C -0.176 4.176 16 C -0.027 4.027 17 O -0.265 6.265 18 C 0.033 3.967 19 H 0.090 0.910 20 C -0.157 4.157 21 C -0.152 4.152 22 C -0.177 4.177 23 C -0.125 4.125 24 H 0.072 0.928 25 H 0.047 0.953 26 H 0.045 0.955 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.102 0.898 30 H 0.106 0.894 31 H 0.111 0.889 32 H 0.080 0.920 33 H 0.093 0.907 34 H 0.097 0.903 35 H 0.080 0.920 36 H 0.088 0.912 37 H 0.083 0.917 38 H 0.107 0.893 39 H 0.094 0.906 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.015 -19.358 -1.140 19.418 hybrid contribution 0.683 0.879 0.217 1.134 sum 1.698 -18.479 -0.922 18.580 Atomic orbital electron populations 1.69982 1.06062 1.26897 1.49803 1.24974 0.94893 0.99305 0.94927 0.86496 0.79767 0.82948 0.78235 1.20487 1.21057 1.19765 1.20991 0.93111 0.90227 1.52126 0.92382 1.19126 0.94086 0.88870 0.98887 1.23622 0.96390 0.79325 1.00571 1.86637 1.41585 1.15176 1.81860 1.22823 0.86036 0.86837 0.72393 1.90555 1.15680 1.88137 1.46208 1.21846 0.97606 0.91647 0.98872 1.22730 0.94915 1.02813 0.97154 1.23564 0.95607 1.00698 0.82846 1.88920 1.53352 1.60537 1.23656 1.22535 0.85811 0.94765 0.93623 0.91041 1.21496 0.97616 1.00268 0.96296 1.21524 0.96369 0.98583 0.98707 1.21835 0.98374 1.04157 0.93360 1.21244 0.97092 0.95325 0.98887 0.92752 0.95268 0.95486 0.92634 0.92604 0.89814 0.89395 0.88863 0.91957 0.90731 0.90276 0.91951 0.91157 0.91684 0.89300 0.90647 0.90572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.75 13.29 55.43 0.74 -26.01 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 3 Si 0.90 21.68 29.54 -169.99 -5.02 16.66 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 7 C -0.53 -15.09 9.11 -34.44 -0.31 -15.40 16 8 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 9 C 0.03 0.74 5.35 -27.88 -0.15 0.59 16 10 C 0.07 1.69 5.41 37.16 0.20 1.90 16 11 O -0.34 -7.02 8.81 -44.48 -0.39 -7.41 16 12 C 0.48 8.56 4.52 36.01 0.16 8.72 16 13 O -0.52 -10.15 13.72 -18.75 -0.26 -10.41 16 14 C -0.10 -1.32 0.69 -154.92 -0.11 -1.42 16 15 C -0.14 -1.58 6.17 -25.60 -0.16 -1.74 16 16 C 0.05 0.62 7.47 38.25 0.29 0.90 16 17 O -0.35 -5.48 10.55 -49.29 -0.52 -6.00 16 18 C 0.09 1.20 2.49 -26.21 -0.07 1.13 16 19 H 0.07 0.76 7.95 -51.93 -0.41 0.35 16 20 C -0.12 -1.57 5.79 -27.11 -0.16 -1.73 16 21 C -0.11 -1.21 5.85 -26.55 -0.16 -1.37 16 22 C -0.14 -1.62 5.53 -26.64 -0.15 -1.76 16 23 C -0.09 -0.97 4.83 -27.01 -0.13 -1.10 16 24 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 25 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.06 1.26 8.13 -51.93 -0.42 0.84 16 28 H 0.06 1.28 8.13 -51.93 -0.42 0.85 16 29 H 0.08 1.01 7.91 -51.93 -0.41 0.60 16 30 H 0.09 0.73 8.04 -51.93 -0.42 0.31 16 31 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.07 1.21 6.62 -51.92 -0.34 0.87 16 34 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.09 1.31 5.54 -51.93 -0.29 1.02 16 39 H 0.07 0.85 8.13 -51.93 -0.42 0.43 16 40 H 0.08 0.64 8.01 -51.93 -0.42 0.22 16 LS Contribution 315.56 15.07 4.76 4.76 Total: -1.00 -32.02 315.56 -8.01 -40.03 By element: Atomic # 1 Polarization: 4.48 SS G_CDS: -6.48 Total: -2.00 kcal Atomic # 6 Polarization: -8.78 SS G_CDS: -0.83 Total: -9.61 kcal Atomic # 7 Polarization: -26.75 SS G_CDS: 0.74 Total: -26.01 kcal Atomic # 8 Polarization: -22.65 SS G_CDS: -1.17 Total: -23.81 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -32.02 -8.01 -40.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000924226425.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.271 kcal (2) G-P(sol) polarization free energy of solvation -32.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds