Wall clock time and date at job start Mon Mar 30 2020 06:58:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 120.00077 * 2 1 4 4 H 1.48501 * 109.47243 * 269.99746 * 3 2 1 5 5 H 1.48497 * 109.47198 * 29.99891 * 3 2 1 6 6 H 1.48508 * 109.47342 * 150.00012 * 3 2 1 7 7 C 1.37880 * 119.99984 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00284 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99849 * 359.97438 * 7 2 1 10 10 C 1.53007 * 109.46950 * 180.02562 * 9 7 2 11 11 O 1.45200 * 109.46866 * 180.02562 * 10 9 7 12 12 C 1.34235 * 116.99969 * 179.97438 * 11 10 9 13 13 O 1.20825 * 119.99758 * 0.02562 * 12 11 10 14 14 C 1.50699 * 120.00135 * 179.97438 * 12 11 10 15 15 C 1.53072 * 111.05147 * 300.96949 * 14 12 11 16 16 C 1.55066 * 102.92421 * 90.62566 * 15 14 12 17 17 O 1.45032 * 107.08731 * 1.94244 * 16 15 14 18 18 C 1.42307 * 105.23770 * 26.99565 * 17 16 15 19 19 H 1.09006 * 109.67947 * 71.83128 * 18 17 16 20 20 C 1.51480 * 117.61270 * 198.03673 * 18 17 16 21 21 C 1.53756 * 107.34877 * 179.23976 * 20 18 17 22 22 C 1.52581 * 111.35433 * 302.59558 * 21 20 18 23 23 C 1.51850 * 111.21087 * 171.07987 * 14 12 11 24 24 H 0.97004 * 119.99971 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.47335 * 60.00230 * 9 7 2 26 26 H 1.08999 * 109.47186 * 300.00478 * 9 7 2 27 27 H 1.09001 * 109.47185 * 60.00608 * 10 9 7 28 28 H 1.08997 * 109.46864 * 299.99827 * 10 9 7 29 29 H 1.09002 * 110.52123 * 332.39078 * 15 14 12 30 30 H 1.09000 * 111.16143 * 209.15611 * 15 14 12 31 31 H 1.09002 * 109.91582 * 242.58083 * 16 15 14 32 32 H 1.09006 * 110.07211 * 121.39576 * 16 15 14 33 33 H 1.09008 * 109.87439 * 59.78102 * 20 18 17 34 34 H 1.08997 * 109.88374 * 298.70657 * 20 18 17 35 35 H 1.09006 * 109.09034 * 63.05509 * 21 20 18 36 36 H 1.08999 * 109.09681 * 182.12839 * 21 20 18 37 37 H 1.08998 * 109.07943 * 175.21582 * 22 21 20 38 38 H 1.09003 * 109.07306 * 294.18846 * 22 21 20 39 39 H 1.08993 * 109.89815 * 62.84597 * 23 14 12 40 40 H 1.09002 * 109.89376 * 183.96104 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 8 1.5192 -4.9196 -0.0011 12 6 2.2503 -6.0454 -0.0018 13 8 3.4569 -5.9821 -0.0013 14 6 1.5661 -7.3881 -0.0018 15 6 0.6620 -7.5446 1.2234 16 6 -0.7021 -7.0066 0.7189 17 8 -0.5288 -6.6464 -0.6752 18 6 0.5220 -7.4808 -1.1494 19 1 0.1645 -8.5067 -1.2380 20 6 1.2202 -7.0714 -2.4298 21 6 2.3134 -8.1157 -2.7100 22 6 3.2907 -8.2236 -1.5432 23 6 2.5626 -8.5125 -0.2221 24 1 -0.4850 0.8401 -0.0004 25 1 0.6240 -2.5567 -0.8903 26 1 0.6246 -2.5570 0.8896 27 1 2.8719 -3.6044 0.8895 28 1 2.8719 -3.6044 -0.8905 29 1 1.0323 -6.9399 2.0513 30 1 0.5780 -8.5903 1.5195 31 1 -0.9913 -6.1284 1.2961 32 1 -1.4659 -7.7789 0.8107 33 1 1.6709 -6.0864 -2.3076 34 1 0.5053 -7.0533 -3.2524 35 1 1.8455 -9.0864 -2.8741 36 1 2.8603 -7.8273 -3.6076 37 1 3.9964 -9.0299 -1.7429 38 1 3.8393 -7.2863 -1.4502 39 1 3.2794 -8.5390 0.5986 40 1 2.0379 -9.4656 -0.2883 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000924226425.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:33 Heat of formation + Delta-G solvation = -165.343179 kcal Electronic energy + Delta-G solvation = -21853.992452 eV Core-core repulsion = 18632.400292 eV Total energy + Delta-G solvation = -3221.592160 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.64781 -40.26497 -38.06870 -36.82255 -35.46849 -33.82166 -32.35443 -30.80609 -29.72479 -27.30484 -25.00903 -23.86370 -23.21003 -22.76446 -21.91417 -20.68690 -18.88131 -18.15815 -17.70629 -17.34212 -16.86339 -16.64781 -16.53014 -16.03436 -15.33064 -15.02224 -14.76390 -14.52464 -14.41530 -13.99489 -13.82542 -13.29756 -13.13280 -13.03486 -12.95092 -12.76971 -12.61046 -12.56535 -12.22196 -12.15320 -11.84707 -11.66540 -11.55994 -11.50604 -11.40813 -11.04218 -10.95005 -10.64512 -10.53444 -8.29358 -6.43778 1.12224 1.38070 1.40761 1.51786 1.75727 2.37824 2.69810 3.04361 3.42153 3.47232 3.58543 3.88379 3.97165 3.98575 4.15333 4.17117 4.19310 4.22432 4.31151 4.36915 4.48454 4.63717 4.70998 4.75333 4.84547 4.85836 4.93355 5.01219 5.05567 5.13189 5.19204 5.23064 5.29612 5.41521 5.41987 5.62807 5.74869 5.96685 6.03103 6.68655 6.77600 7.26205 8.83406 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.027371 B = 0.004862 C = 0.004599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.743863 B = 5757.553636 C = 6086.684507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.007 3.993 3 Si 0.975 3.025 4 H -0.269 1.269 5 H -0.276 1.276 6 H -0.263 1.263 7 C -0.553 4.553 8 H 0.063 0.937 9 C 0.038 3.962 10 C 0.091 3.909 11 O -0.350 6.350 12 C 0.468 3.532 13 O -0.536 6.536 14 C -0.097 4.097 15 C -0.132 4.132 16 C 0.043 3.957 17 O -0.387 6.387 18 C 0.088 3.912 19 H 0.115 0.885 20 C -0.125 4.125 21 C -0.107 4.107 22 C -0.142 4.142 23 C -0.084 4.084 24 H 0.268 0.732 25 H 0.000 1.000 26 H 0.004 0.996 27 H 0.056 0.944 28 H 0.051 0.949 29 H 0.069 0.931 30 H 0.135 0.865 31 H 0.070 0.930 32 H 0.099 0.901 33 H 0.028 0.972 34 H 0.086 0.914 35 H 0.098 0.902 36 H 0.070 0.930 37 H 0.089 0.911 38 H 0.046 0.954 39 H 0.071 0.929 40 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.314 -22.000 -0.980 22.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.192 4.192 3 Si 0.799 3.201 4 H -0.195 1.195 5 H -0.201 1.201 6 H -0.187 1.187 7 C -0.591 4.591 8 H 0.081 0.919 9 C 0.000 4.000 10 C 0.017 3.983 11 O -0.266 6.266 12 C 0.313 3.687 13 O -0.427 6.427 14 C -0.098 4.098 15 C -0.170 4.170 16 C -0.033 4.033 17 O -0.306 6.306 18 C 0.030 3.970 19 H 0.132 0.868 20 C -0.163 4.163 21 C -0.144 4.144 22 C -0.179 4.179 23 C -0.121 4.121 24 H 0.077 0.923 25 H 0.019 0.981 26 H 0.022 0.978 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.088 0.912 30 H 0.153 0.847 31 H 0.088 0.912 32 H 0.117 0.883 33 H 0.047 0.953 34 H 0.104 0.896 35 H 0.116 0.884 36 H 0.089 0.911 37 H 0.108 0.892 38 H 0.065 0.935 39 H 0.090 0.910 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 1.392 -21.662 -1.096 21.734 hybrid contribution 0.541 1.548 0.180 1.649 sum 1.932 -20.114 -0.916 20.228 Atomic orbital electron populations 1.70110 1.07893 1.28333 1.50181 1.25993 0.95850 1.03478 0.93903 0.85298 0.78518 0.77577 0.78752 1.19459 1.20114 1.18702 1.21365 0.93590 0.91281 1.52831 0.91853 1.18895 0.94120 0.90658 0.96278 1.23082 0.95026 0.79921 1.00251 1.86641 1.42003 1.15350 1.82623 1.23993 0.86123 0.87507 0.71063 1.90543 1.16749 1.88407 1.47027 1.22077 0.98408 0.88931 1.00407 1.22823 0.93276 1.05281 0.95590 1.23743 0.97343 1.00954 0.81288 1.88884 1.54250 1.62124 1.25338 1.22806 0.85026 0.96288 0.92832 0.86781 1.21580 0.98573 0.98958 0.97183 1.21507 0.95400 0.99233 0.98278 1.21830 0.98894 1.02884 0.94327 1.21367 0.96635 0.95872 0.98204 0.92267 0.98127 0.97796 0.92605 0.93044 0.91216 0.84737 0.91165 0.88313 0.95315 0.89586 0.88367 0.91090 0.89229 0.93513 0.91018 0.86100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.17 13.29 21.45 0.28 -56.88 16 2 C 0.01 0.40 5.46 84.66 0.46 0.86 16 3 Si 0.98 44.76 29.54 68.60 2.03 46.78 16 4 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 5 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 6 H -0.26 -11.56 7.11 99.48 0.71 -10.86 16 7 C -0.55 -32.75 9.11 25.60 0.23 -32.52 16 8 H 0.06 3.59 7.74 -2.91 -0.02 3.57 16 9 C 0.04 2.16 5.35 29.85 0.16 2.32 16 10 C 0.09 4.43 5.41 71.98 0.39 4.82 16 11 O -0.35 -15.44 8.81 -46.48 -0.41 -15.85 16 12 C 0.47 17.32 4.52 71.24 0.32 17.64 16 13 O -0.54 -21.87 13.72 21.97 0.30 -21.57 16 14 C -0.10 -2.44 0.69 -52.45 -0.04 -2.47 16 15 C -0.13 -2.70 6.17 31.33 0.19 -2.51 16 16 C 0.04 1.01 7.47 72.69 0.54 1.56 16 17 O -0.39 -12.08 10.55 -135.54 -1.43 -13.51 16 18 C 0.09 2.14 2.49 30.93 0.08 2.22 16 19 H 0.11 1.85 7.95 -2.38 -0.02 1.83 16 20 C -0.13 -3.23 5.79 30.35 0.18 -3.06 16 21 C -0.11 -2.00 5.85 30.71 0.18 -1.82 16 22 C -0.14 -2.97 5.53 30.65 0.17 -2.80 16 23 C -0.08 -1.55 4.83 30.41 0.15 -1.41 16 24 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 25 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 26 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 27 H 0.06 2.68 8.13 -2.39 -0.02 2.66 16 28 H 0.05 2.51 8.13 -2.39 -0.02 2.49 16 29 H 0.07 1.62 7.91 -2.39 -0.02 1.60 16 30 H 0.13 1.52 8.04 -2.39 -0.02 1.50 16 31 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.10 1.60 8.14 -2.38 -0.02 1.58 16 33 H 0.03 0.98 6.62 -2.38 -0.02 0.96 16 34 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.10 1.20 8.14 -2.38 -0.02 1.18 16 36 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.05 1.38 5.54 -2.39 -0.01 1.37 16 39 H 0.07 1.41 8.13 -2.39 -0.02 1.39 16 40 H 0.12 1.25 8.01 -2.39 -0.02 1.23 16 Total: -1.00 -73.75 315.56 4.80 -68.95 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: 1.01 Total: 9.26 kcal Atomic # 6 Polarization: -20.19 SS G_CDS: 3.02 Total: -17.18 kcal Atomic # 7 Polarization: -57.17 SS G_CDS: 0.28 Total: -56.88 kcal Atomic # 8 Polarization: -49.40 SS G_CDS: -1.54 Total: -50.93 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.78 kcal Total: -73.75 4.80 -68.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000924226425.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.394 kcal (2) G-P(sol) polarization free energy of solvation -73.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds