Wall clock time and date at job start Mon Mar 30 2020 06:58:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00046 * 2 1 4 4 H 1.48503 * 109.47126 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47160 * 299.99885 * 3 2 1 6 6 H 1.48490 * 109.47432 * 60.00022 * 3 2 1 7 7 C 1.37879 * 120.00166 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00240 * 179.97438 * 7 2 1 9 9 C 1.50708 * 119.99510 * 0.27982 * 7 2 1 10 10 C 1.53000 * 109.46964 * 179.72352 * 9 7 2 11 11 O 1.45197 * 109.47149 * 179.97438 * 10 9 7 12 12 C 1.34226 * 117.00235 * 179.97438 * 11 10 9 13 13 O 1.20830 * 119.99816 * 0.02562 * 12 11 10 14 14 C 1.50699 * 120.00172 * 180.02562 * 12 11 10 15 15 C 1.53234 * 110.82958 * 66.79577 * 14 12 11 16 16 C 1.55069 * 103.07672 * 269.07518 * 15 14 12 17 17 O 1.45031 * 107.08738 * 358.34223 * 16 15 14 18 18 C 1.42317 * 105.23136 * 332.99675 * 17 16 15 19 19 H 1.09000 * 109.69060 * 287.85801 * 18 17 16 20 20 C 1.51484 * 117.59552 * 161.95883 * 18 17 16 21 21 C 1.53754 * 107.35309 * 180.44586 * 20 18 17 22 22 C 1.52579 * 111.40264 * 57.44730 * 21 20 18 23 23 C 1.51854 * 110.76616 * 196.54753 * 14 12 11 24 24 H 0.97002 * 119.99780 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.46662 * 299.71901 * 9 7 2 26 26 H 1.08991 * 109.47146 * 59.72235 * 9 7 2 27 27 H 1.09001 * 109.47309 * 299.99997 * 10 9 7 28 28 H 1.09006 * 109.46940 * 59.99575 * 10 9 7 29 29 H 1.09004 * 110.69712 * 27.47407 * 15 14 12 30 30 H 1.09004 * 110.69485 * 150.50402 * 15 14 12 31 31 H 1.09003 * 109.91108 * 117.69615 * 16 15 14 32 32 H 1.08993 * 109.91819 * 238.97060 * 16 15 14 33 33 H 1.08997 * 109.88228 * 299.90799 * 20 18 17 34 34 H 1.09003 * 109.87621 * 60.98101 * 20 18 17 35 35 H 1.08993 * 109.09795 * 177.94399 * 21 20 18 36 36 H 1.09010 * 109.09409 * 297.02382 * 21 20 18 37 37 H 1.09000 * 109.07179 * 65.77001 * 22 21 20 38 38 H 1.08999 * 109.08075 * 184.80817 * 22 21 20 39 39 H 1.08998 * 109.89403 * 175.78465 * 23 14 12 40 40 H 1.09009 * 109.89058 * 296.89522 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 -0.0053 10 6 2.2452 -3.6621 -0.0103 11 8 1.5192 -4.9195 -0.0153 12 6 2.2502 -6.0453 -0.0207 13 8 3.4568 -5.9821 -0.0208 14 6 1.5660 -7.3880 -0.0266 15 6 0.8154 -7.6112 -1.3438 16 6 -0.6004 -7.0568 -1.0392 17 8 -0.5980 -6.6183 0.3433 18 6 0.3883 -7.4171 0.9872 19 1 0.0216 -8.4379 1.0942 20 6 0.9254 -6.9316 2.3178 21 6 1.9718 -7.9541 2.7906 22 6 3.0858 -8.1267 1.7624 23 6 2.5344 -8.4875 0.3724 24 1 -0.4850 0.8401 -0.0004 25 1 0.6244 -2.5608 0.8845 26 1 0.6244 -2.5530 -0.8954 27 1 2.8719 -3.6005 -0.9000 28 1 2.8719 -3.6082 0.8799 29 1 1.2828 -7.0505 -2.1533 30 1 0.7721 -8.6728 -1.5873 31 1 -0.8181 -6.2141 -1.6954 32 1 -1.3442 -7.8411 -1.1787 33 1 1.3916 -5.9540 2.1949 34 1 0.1148 -6.8680 3.0437 35 1 2.4044 -7.6128 3.7310 36 1 1.4838 -8.9156 2.9509 37 1 3.6451 -7.1945 1.6833 38 1 3.7578 -8.9181 2.0945 39 1 2.0083 -9.4400 0.4360 40 1 3.3399 -8.5557 -0.3589 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000924226431.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:36 Heat of formation + Delta-G solvation = -147.574499 kcal Electronic energy + Delta-G solvation = -21867.484107 eV Core-core repulsion = 18646.662455 eV Total energy + Delta-G solvation = -3220.821652 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.43741 -38.87393 -36.65833 -35.61151 -33.29710 -32.77491 -30.35614 -29.72654 -28.80355 -25.32912 -23.63195 -22.80557 -22.17399 -21.04064 -20.72813 -19.29549 -17.26354 -16.34624 -16.14106 -16.08124 -15.84998 -15.37479 -14.83431 -14.52008 -14.14124 -14.04337 -13.32168 -13.27497 -12.82156 -12.72258 -12.33762 -12.10709 -12.05243 -11.74871 -11.30543 -11.27544 -11.12582 -10.94140 -10.76357 -10.73431 -10.63166 -10.55140 -10.12218 -9.99406 -9.56946 -9.54736 -9.47492 -9.22149 -8.41047 -6.06665 -4.10940 2.55126 3.18264 3.29200 3.36734 3.41933 3.67822 4.38826 4.40645 4.53733 4.59019 4.82559 4.88953 5.01733 5.05931 5.13744 5.21414 5.29662 5.32817 5.42835 5.56761 5.63686 5.70031 5.74169 5.82539 5.90106 5.97115 6.01508 6.12506 6.13316 6.14511 6.18407 6.36115 6.70002 6.93626 7.08633 7.62226 7.69420 7.91619 8.24965 8.34361 8.95107 9.53181 11.04760 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.026954 B = 0.004894 C = 0.004656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.566271 B = 5719.960724 C = 6012.740337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.061 3.939 3 Si 0.898 3.102 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.525 4.525 8 H 0.058 0.942 9 C 0.027 3.973 10 C 0.073 3.927 11 O -0.336 6.336 12 C 0.475 3.525 13 O -0.517 6.517 14 C -0.098 4.098 15 C -0.138 4.138 16 C 0.049 3.951 17 O -0.344 6.344 18 C 0.092 3.908 19 H 0.070 0.930 20 C -0.121 4.121 21 C -0.115 4.115 22 C -0.136 4.136 23 C -0.088 4.088 24 H 0.262 0.738 25 H 0.029 0.971 26 H 0.027 0.973 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.092 0.908 32 H 0.063 0.937 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.071 0.929 36 H 0.062 0.938 37 H 0.080 0.920 38 H 0.066 0.934 39 H 0.075 0.925 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.789 -19.703 1.068 19.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.141 4.141 3 Si 0.725 3.275 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.564 4.564 8 H 0.077 0.923 9 C -0.010 4.010 10 C 0.000 4.000 11 O -0.252 6.252 12 C 0.318 3.682 13 O -0.407 6.407 14 C -0.099 4.099 15 C -0.176 4.176 16 C -0.028 4.028 17 O -0.263 6.263 18 C 0.033 3.967 19 H 0.088 0.912 20 C -0.158 4.158 21 C -0.152 4.152 22 C -0.174 4.174 23 C -0.126 4.126 24 H 0.072 0.928 25 H 0.047 0.953 26 H 0.046 0.954 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.101 0.899 30 H 0.106 0.894 31 H 0.111 0.889 32 H 0.081 0.919 33 H 0.095 0.905 34 H 0.097 0.903 35 H 0.089 0.911 36 H 0.081 0.919 37 H 0.098 0.902 38 H 0.085 0.915 39 H 0.093 0.907 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 0.849 -19.339 1.170 19.393 hybrid contribution 0.710 0.880 -0.219 1.152 sum 1.560 -18.459 0.952 18.549 Atomic orbital electron populations 1.69994 1.06059 1.26780 1.49904 1.24978 0.94890 0.99313 0.94947 0.86444 0.80058 0.83296 0.77691 1.19634 1.20855 1.20829 1.21033 0.93142 0.90220 1.51977 0.92335 1.19129 0.94081 0.88870 0.98909 1.23620 0.96392 0.79386 1.00560 1.86657 1.41521 1.15146 1.81834 1.22868 0.86068 0.86882 0.72357 1.90583 1.15671 1.88225 1.46224 1.21894 0.97860 0.91698 0.98471 1.22761 0.95836 1.02698 0.96319 1.23564 0.95242 0.99870 0.84115 1.88935 1.57085 1.59923 1.20309 1.22500 0.85931 0.95034 0.93204 0.91179 1.21518 0.98867 1.00215 0.95207 1.21522 0.95972 0.98832 0.98884 1.21783 0.98291 1.03523 0.93778 1.21285 0.98062 0.95561 0.97673 0.92810 0.95284 0.95447 0.92659 0.92621 0.89873 0.89354 0.88950 0.91907 0.90451 0.90255 0.91077 0.91887 0.90154 0.91500 0.90659 0.90349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.77 13.29 55.43 0.74 -26.04 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 3 Si 0.90 21.69 29.54 -169.99 -5.02 16.67 16 4 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.53 -15.07 9.11 -34.44 -0.31 -15.39 16 8 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 9 C 0.03 0.73 5.35 -27.88 -0.15 0.58 16 10 C 0.07 1.69 5.40 37.16 0.20 1.89 16 11 O -0.34 -7.01 8.38 -44.77 -0.38 -7.38 16 12 C 0.48 8.56 4.54 36.01 0.16 8.72 16 13 O -0.52 -10.25 14.15 -18.75 -0.27 -10.52 16 14 C -0.10 -1.31 0.69 -154.84 -0.11 -1.42 16 15 C -0.14 -1.57 6.20 -25.52 -0.16 -1.73 16 16 C 0.05 0.60 7.60 38.25 0.29 0.90 16 17 O -0.34 -5.45 10.49 -50.59 -0.53 -5.98 16 18 C 0.09 1.21 2.43 -26.21 -0.06 1.15 16 19 H 0.07 0.75 7.97 -51.93 -0.41 0.34 16 20 C -0.12 -1.60 5.78 -27.11 -0.16 -1.76 16 21 C -0.11 -1.22 5.85 -26.55 -0.16 -1.37 16 22 C -0.14 -1.57 5.54 -26.52 -0.15 -1.71 16 23 C -0.09 -0.97 4.84 -26.89 -0.13 -1.10 16 24 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 25 H 0.03 0.83 8.14 -51.93 -0.42 0.40 16 26 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.06 1.26 8.13 -51.93 -0.42 0.84 16 28 H 0.06 1.27 8.13 -51.93 -0.42 0.85 16 29 H 0.08 0.99 7.91 -51.93 -0.41 0.58 16 30 H 0.09 0.73 8.04 -51.93 -0.42 0.31 16 31 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.08 1.27 6.32 -51.93 -0.33 0.94 16 34 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.06 0.54 8.14 -51.92 -0.42 0.12 16 37 H 0.08 1.18 5.85 -51.93 -0.30 0.87 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.07 0.63 8.03 -51.93 -0.42 0.21 16 40 H 0.08 0.89 8.08 -51.92 -0.42 0.47 16 LS Contribution 315.61 15.07 4.76 4.76 Total: -1.00 -32.19 315.61 -8.00 -40.19 By element: Atomic # 1 Polarization: 4.37 SS G_CDS: -6.48 Total: -2.11 kcal Atomic # 6 Polarization: -8.77 SS G_CDS: -0.82 Total: -9.59 kcal Atomic # 7 Polarization: -26.77 SS G_CDS: 0.74 Total: -26.04 kcal Atomic # 8 Polarization: -22.71 SS G_CDS: -1.17 Total: -23.88 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -32.19 -8.00 -40.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000924226431.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.382 kcal (2) G-P(sol) polarization free energy of solvation -32.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds