Wall clock time and date at job start Mon Mar 30 2020 06:58:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00046 * 2 1 4 4 H 1.48503 * 109.47126 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47160 * 299.99885 * 3 2 1 6 6 H 1.48490 * 109.47432 * 60.00022 * 3 2 1 7 7 C 1.37879 * 120.00166 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00240 * 179.97438 * 7 2 1 9 9 C 1.50708 * 119.99510 * 0.27982 * 7 2 1 10 10 C 1.53000 * 109.46964 * 179.72352 * 9 7 2 11 11 O 1.45197 * 109.47149 * 179.97438 * 10 9 7 12 12 C 1.34226 * 117.00235 * 179.97438 * 11 10 9 13 13 O 1.20830 * 119.99816 * 0.02562 * 12 11 10 14 14 C 1.50699 * 120.00172 * 180.02562 * 12 11 10 15 15 C 1.53234 * 110.82958 * 66.79577 * 14 12 11 16 16 C 1.55069 * 103.07672 * 269.07518 * 15 14 12 17 17 O 1.45031 * 107.08738 * 358.34223 * 16 15 14 18 18 C 1.42317 * 105.23136 * 332.99675 * 17 16 15 19 19 H 1.09000 * 109.69060 * 287.85801 * 18 17 16 20 20 C 1.51484 * 117.59552 * 161.95883 * 18 17 16 21 21 C 1.53754 * 107.35309 * 180.44586 * 20 18 17 22 22 C 1.52579 * 111.40264 * 57.44730 * 21 20 18 23 23 C 1.51854 * 110.76616 * 196.54753 * 14 12 11 24 24 H 0.97002 * 119.99780 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.46662 * 299.71901 * 9 7 2 26 26 H 1.08991 * 109.47146 * 59.72235 * 9 7 2 27 27 H 1.09001 * 109.47309 * 299.99997 * 10 9 7 28 28 H 1.09006 * 109.46940 * 59.99575 * 10 9 7 29 29 H 1.09004 * 110.69712 * 27.47407 * 15 14 12 30 30 H 1.09004 * 110.69485 * 150.50402 * 15 14 12 31 31 H 1.09003 * 109.91108 * 117.69615 * 16 15 14 32 32 H 1.08993 * 109.91819 * 238.97060 * 16 15 14 33 33 H 1.08997 * 109.88228 * 299.90799 * 20 18 17 34 34 H 1.09003 * 109.87621 * 60.98101 * 20 18 17 35 35 H 1.08993 * 109.09795 * 177.94399 * 21 20 18 36 36 H 1.09010 * 109.09409 * 297.02382 * 21 20 18 37 37 H 1.09000 * 109.07179 * 65.77001 * 22 21 20 38 38 H 1.08999 * 109.08075 * 184.80817 * 22 21 20 39 39 H 1.08998 * 109.89403 * 175.78465 * 23 14 12 40 40 H 1.09009 * 109.89058 * 296.89522 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 -0.0053 10 6 2.2452 -3.6621 -0.0103 11 8 1.5192 -4.9195 -0.0153 12 6 2.2502 -6.0453 -0.0207 13 8 3.4568 -5.9821 -0.0208 14 6 1.5660 -7.3880 -0.0266 15 6 0.8154 -7.6112 -1.3438 16 6 -0.6004 -7.0568 -1.0392 17 8 -0.5980 -6.6183 0.3433 18 6 0.3883 -7.4171 0.9872 19 1 0.0216 -8.4379 1.0942 20 6 0.9254 -6.9316 2.3178 21 6 1.9718 -7.9541 2.7906 22 6 3.0858 -8.1267 1.7624 23 6 2.5344 -8.4875 0.3724 24 1 -0.4850 0.8401 -0.0004 25 1 0.6244 -2.5608 0.8845 26 1 0.6244 -2.5530 -0.8954 27 1 2.8719 -3.6005 -0.9000 28 1 2.8719 -3.6082 0.8799 29 1 1.2828 -7.0505 -2.1533 30 1 0.7721 -8.6728 -1.5873 31 1 -0.8181 -6.2141 -1.6954 32 1 -1.3442 -7.8411 -1.1787 33 1 1.3916 -5.9540 2.1949 34 1 0.1148 -6.8680 3.0437 35 1 2.4044 -7.6128 3.7310 36 1 1.4838 -8.9156 2.9509 37 1 3.6451 -7.1945 1.6833 38 1 3.7578 -8.9181 2.0945 39 1 2.0083 -9.4400 0.4360 40 1 3.3399 -8.5557 -0.3589 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000924226431.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:36 Heat of formation + Delta-G solvation = -166.740255 kcal Electronic energy + Delta-G solvation = -21868.315197 eV Core-core repulsion = 18646.662455 eV Total energy + Delta-G solvation = -3221.652742 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.62867 -40.25560 -38.01950 -36.88110 -35.46954 -33.79452 -32.36150 -30.80615 -29.73848 -27.30272 -25.00440 -23.87908 -23.22196 -22.76307 -21.92444 -20.62093 -18.88754 -18.16715 -17.71209 -17.36507 -16.86212 -16.62936 -16.51546 -16.03075 -15.31194 -15.05051 -14.75915 -14.52856 -14.42366 -14.01468 -13.82473 -13.28067 -13.12904 -13.02125 -12.96463 -12.74935 -12.62621 -12.55597 -12.22349 -12.16315 -11.83523 -11.63872 -11.57008 -11.49342 -11.41888 -11.05531 -11.04012 -10.65163 -10.52610 -8.29557 -6.43921 1.13209 1.38036 1.39413 1.52819 1.75955 2.37684 2.69447 3.04183 3.42821 3.46452 3.58380 3.87228 3.95427 3.98199 4.15068 4.17112 4.19003 4.22000 4.29688 4.36752 4.48968 4.63834 4.70947 4.74888 4.84322 4.85113 4.93362 4.99806 5.05449 5.13307 5.18440 5.23608 5.28784 5.40851 5.41963 5.59987 5.73365 5.97741 6.03032 6.68771 6.77319 7.26145 8.83440 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.026954 B = 0.004894 C = 0.004656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.566271 B = 5719.960724 C = 6012.740337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.006 3.994 3 Si 0.976 3.024 4 H -0.263 1.263 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.552 4.552 8 H 0.063 0.937 9 C 0.038 3.962 10 C 0.090 3.910 11 O -0.349 6.349 12 C 0.468 3.532 13 O -0.539 6.539 14 C -0.096 4.096 15 C -0.132 4.132 16 C 0.042 3.958 17 O -0.385 6.385 18 C 0.089 3.911 19 H 0.113 0.887 20 C -0.127 4.127 21 C -0.107 4.107 22 C -0.138 4.138 23 C -0.084 4.084 24 H 0.268 0.732 25 H 0.001 0.999 26 H 0.003 0.997 27 H 0.055 0.945 28 H 0.051 0.949 29 H 0.069 0.931 30 H 0.135 0.865 31 H 0.071 0.929 32 H 0.099 0.901 33 H 0.030 0.970 34 H 0.084 0.916 35 H 0.071 0.929 36 H 0.099 0.901 37 H 0.037 0.963 38 H 0.092 0.908 39 H 0.120 0.880 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.138 -21.973 1.069 22.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.193 4.193 3 Si 0.799 3.201 4 H -0.187 1.187 5 H -0.198 1.198 6 H -0.199 1.199 7 C -0.589 4.589 8 H 0.081 0.919 9 C 0.000 4.000 10 C 0.017 3.983 11 O -0.265 6.265 12 C 0.313 3.687 13 O -0.430 6.430 14 C -0.097 4.097 15 C -0.170 4.170 16 C -0.034 4.034 17 O -0.304 6.304 18 C 0.031 3.969 19 H 0.131 0.869 20 C -0.165 4.165 21 C -0.144 4.144 22 C -0.175 4.175 23 C -0.122 4.122 24 H 0.077 0.923 25 H 0.019 0.981 26 H 0.021 0.979 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.088 0.912 30 H 0.153 0.847 31 H 0.090 0.910 32 H 0.117 0.883 33 H 0.049 0.951 34 H 0.103 0.897 35 H 0.090 0.910 36 H 0.117 0.883 37 H 0.056 0.944 38 H 0.110 0.890 39 H 0.138 0.862 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.205 -21.632 1.167 21.697 hybrid contribution 0.569 1.548 -0.199 1.661 sum 1.774 -20.084 0.968 20.186 Atomic orbital electron populations 1.70119 1.07897 1.28269 1.50270 1.25997 0.95848 1.03489 0.93919 0.85244 0.78809 0.77873 0.78177 1.18663 1.19808 1.19873 1.21394 0.93576 0.91271 1.52701 0.91872 1.18895 0.94111 0.90663 0.96283 1.23080 0.95029 0.79993 1.00234 1.86663 1.41918 1.15307 1.82569 1.24042 0.86132 0.87560 0.70947 1.90564 1.16792 1.88498 1.47152 1.22137 0.98506 0.88917 1.00177 1.22857 0.94304 1.05254 0.94563 1.23753 0.97031 1.00255 0.82379 1.88897 1.57925 1.61555 1.22072 1.22762 0.85230 0.96549 0.92362 0.86927 1.21598 0.99669 0.98969 0.96232 1.21505 0.95036 0.99496 0.98396 1.21798 0.98693 1.02278 0.94778 1.21402 0.97725 0.96177 0.96853 0.92269 0.98081 0.97852 0.92682 0.93017 0.91195 0.84714 0.91048 0.88265 0.95065 0.89712 0.91028 0.88276 0.94401 0.88968 0.86164 0.90746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.26 13.29 21.45 0.28 -56.97 16 2 C 0.01 0.38 5.46 84.66 0.46 0.84 16 3 Si 0.98 44.83 29.54 68.60 2.03 46.85 16 4 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 5 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 6 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 7 C -0.55 -32.72 9.11 25.60 0.23 -32.48 16 8 H 0.06 3.60 7.74 -2.91 -0.02 3.58 16 9 C 0.04 2.16 5.35 29.85 0.16 2.32 16 10 C 0.09 4.41 5.40 71.98 0.39 4.80 16 11 O -0.35 -15.40 8.38 -46.09 -0.39 -15.79 16 12 C 0.47 17.35 4.54 71.24 0.32 17.68 16 13 O -0.54 -22.13 14.15 21.95 0.31 -21.82 16 14 C -0.10 -2.42 0.69 -52.39 -0.04 -2.45 16 15 C -0.13 -2.68 6.20 31.38 0.19 -2.48 16 16 C 0.04 0.98 7.60 72.69 0.55 1.53 16 17 O -0.39 -12.05 10.49 -134.29 -1.41 -13.46 16 18 C 0.09 2.17 2.43 30.93 0.08 2.24 16 19 H 0.11 1.84 7.97 -2.39 -0.02 1.83 16 20 C -0.13 -3.33 5.78 30.35 0.18 -3.15 16 21 C -0.11 -2.02 5.85 30.71 0.18 -1.84 16 22 C -0.14 -2.88 5.54 30.73 0.17 -2.71 16 23 C -0.08 -1.57 4.84 30.49 0.15 -1.43 16 24 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 25 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 26 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 27 H 0.05 2.65 8.13 -2.39 -0.02 2.63 16 28 H 0.05 2.52 8.13 -2.38 -0.02 2.50 16 29 H 0.07 1.60 7.91 -2.38 -0.02 1.58 16 30 H 0.13 1.51 8.04 -2.38 -0.02 1.49 16 31 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.03 1.08 6.32 -2.39 -0.02 1.07 16 34 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.10 1.21 8.14 -2.38 -0.02 1.19 16 37 H 0.04 1.11 5.85 -2.39 -0.01 1.10 16 38 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.12 1.24 8.03 -2.39 -0.02 1.22 16 40 H 0.07 1.47 8.08 -2.38 -0.02 1.45 16 Total: -1.00 -74.16 315.61 4.86 -69.30 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: 1.01 Total: 9.01 kcal Atomic # 6 Polarization: -20.16 SS G_CDS: 3.03 Total: -17.13 kcal Atomic # 7 Polarization: -57.26 SS G_CDS: 0.28 Total: -56.97 kcal Atomic # 8 Polarization: -49.58 SS G_CDS: -1.48 Total: -51.06 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.85 kcal Total: -74.16 4.86 -69.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000924226431.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.441 kcal (2) G-P(sol) polarization free energy of solvation -74.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds