Wall clock time and date at job start Mon Mar 30 2020 06:58:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86805 * 120.00278 * 2 1 4 4 H 1.48495 * 109.47076 * 270.00109 * 3 2 1 5 5 H 1.48498 * 109.47020 * 29.99991 * 3 2 1 6 6 H 1.48500 * 109.47046 * 149.99812 * 3 2 1 7 7 C 1.37879 * 120.00250 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99395 * 0.02562 * 7 2 1 9 9 C 1.50701 * 120.00291 * 179.97438 * 7 2 1 10 10 C 1.53006 * 109.46768 * 180.02562 * 9 7 2 11 11 O 1.45198 * 109.46677 * 179.97438 * 10 9 7 12 12 C 1.34230 * 116.99836 * 179.97438 * 11 10 9 13 13 O 1.20825 * 120.00164 * 0.02562 * 12 11 10 14 14 C 1.50699 * 120.00045 * 179.97438 * 12 11 10 15 15 C 1.55334 * 106.09884 * 301.26548 * 14 12 11 16 16 C 1.55303 * 101.35778 * 225.21132 * 15 14 12 17 17 O 1.44754 * 102.92452 * 38.15720 * 16 15 14 18 18 C 1.44198 * 106.13416 * 318.88575 * 17 16 15 19 19 H 1.09003 * 107.13011 * 142.06742 * 18 17 16 20 20 C 1.51002 * 110.26729 * 258.65793 * 18 17 16 21 21 C 1.52862 * 110.83392 * 92.47702 * 20 18 17 22 22 C 1.52943 * 107.24825 * 64.60477 * 21 20 18 23 23 C 1.49265 * 107.25684 * 59.30366 * 14 12 11 24 24 H 0.97006 * 120.00169 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.47147 * 59.99997 * 9 7 2 26 26 H 1.08992 * 109.46891 * 299.99748 * 9 7 2 27 27 H 1.08998 * 109.47367 * 60.00037 * 10 9 7 28 28 H 1.09004 * 109.47060 * 299.99915 * 10 9 7 29 29 H 1.08995 * 111.06047 * 107.18743 * 15 14 12 30 30 H 1.09006 * 111.07958 * 343.23777 * 15 14 12 31 31 H 1.08992 * 110.72066 * 279.79669 * 16 15 14 32 32 H 1.09004 * 110.87144 * 156.59041 * 16 15 14 33 33 H 1.08998 * 109.20474 * 332.12793 * 20 18 17 34 34 H 1.09001 * 109.20056 * 212.82777 * 20 18 17 35 35 H 1.08997 * 109.89964 * 305.17229 * 21 20 18 36 36 H 1.09000 * 109.96152 * 184.07317 * 21 20 18 37 37 H 1.09001 * 109.30157 * 174.69137 * 22 21 20 38 38 H 1.08998 * 109.30412 * 55.30462 * 22 21 20 39 39 H 1.09002 * 107.89521 * 2.26308 * 23 14 12 40 40 H 1.09004 * 107.89182 * 246.14330 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 1.4644 -2.1293 -0.0014 9 6 3.5115 -1.1940 -0.0011 10 6 4.0214 -2.6366 -0.0023 11 8 5.4734 -2.6366 -0.0035 12 6 6.0828 -3.8326 -0.0040 13 8 5.4247 -4.8460 -0.0041 14 6 7.5877 -3.9115 -0.0058 15 6 8.0569 -3.1608 -1.2822 16 6 9.1216 -4.1435 -1.8411 17 8 8.5377 -5.4405 -1.5726 18 6 7.9564 -5.3534 -0.2559 19 1 7.0248 -5.9191 -0.2781 20 6 8.8602 -6.0111 0.7594 21 6 9.8123 -4.9899 1.3819 22 6 8.9575 -3.9887 2.1604 23 6 8.0695 -3.2079 1.2192 24 1 -0.4851 0.8401 -0.0004 25 1 3.8752 -0.6804 0.8888 26 1 3.8745 -0.6801 -0.8911 27 1 3.6578 -3.1499 -0.8924 28 1 3.6584 -3.1510 0.8875 29 1 8.5055 -2.2002 -1.0290 30 1 7.2346 -3.0327 -1.9863 31 1 10.0674 -4.0293 -1.3117 32 1 9.2607 -3.9973 -2.9123 33 1 9.4421 -6.7915 0.2692 34 1 8.2511 -6.4588 1.5448 35 1 10.3668 -4.4738 0.5982 36 1 10.5051 -5.4909 2.0580 37 1 9.6093 -3.2988 2.6965 38 1 8.3378 -4.5257 2.8784 39 1 7.1959 -2.8766 1.7806 40 1 8.6164 -2.3199 0.9021 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000924226433.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:40 Heat of formation + Delta-G solvation = -143.742624 kcal Electronic energy + Delta-G solvation = -21426.910880 eV Core-core repulsion = 18206.255390 eV Total energy + Delta-G solvation = -3220.655490 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.64979 -39.25771 -36.29946 -36.10848 -33.60106 -33.09687 -30.75485 -30.24794 -29.18145 -25.54106 -23.90212 -23.13496 -22.41469 -21.20123 -20.65993 -18.96508 -17.57187 -17.06295 -16.28581 -16.15828 -15.96304 -15.67774 -14.94973 -14.76314 -14.24666 -13.92382 -13.77891 -13.53935 -12.97401 -12.86492 -12.53082 -12.41134 -12.12429 -11.97968 -11.78027 -11.49880 -11.37123 -11.28922 -10.79219 -10.76980 -10.69591 -10.50309 -10.34672 -10.00384 -9.84210 -9.75786 -9.57464 -9.38261 -8.65667 -6.15949 -4.17479 2.40581 2.86589 3.24890 3.32385 3.36061 3.70920 4.03248 4.35335 4.42385 4.48319 4.66988 4.72660 4.79393 4.92451 5.06204 5.10013 5.17369 5.17524 5.34091 5.44092 5.53113 5.60292 5.67906 5.74968 5.77007 5.83631 5.87663 5.90524 5.91985 6.00531 6.10407 6.16514 6.39798 6.66366 6.75367 7.13108 7.16983 7.58496 8.01590 8.36362 8.85583 9.43340 10.96629 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.031745 B = 0.004304 C = 0.004250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.823881 B = 6503.490332 C = 6586.791064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.073 3.927 3 Si 0.881 3.119 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.264 1.264 7 C -0.529 4.529 8 H 0.075 0.925 9 C -0.008 4.008 10 C 0.081 3.919 11 O -0.355 6.355 12 C 0.459 3.541 13 O -0.508 6.508 14 C -0.060 4.060 15 C -0.144 4.144 16 C 0.041 3.959 17 O -0.367 6.367 18 C 0.076 3.924 19 H 0.115 0.885 20 C -0.129 4.129 21 C -0.121 4.121 22 C -0.117 4.117 23 C -0.106 4.106 24 H 0.266 0.734 25 H 0.028 0.972 26 H 0.023 0.977 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.096 0.904 30 H 0.086 0.914 31 H 0.065 0.935 32 H 0.095 0.905 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.070 0.930 38 H 0.064 0.936 39 H 0.074 0.926 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.572 -6.986 1.296 23.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.129 4.129 3 Si 0.708 3.292 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.188 1.188 7 C -0.567 4.567 8 H 0.093 0.907 9 C -0.045 4.045 10 C 0.008 3.992 11 O -0.271 6.271 12 C 0.302 3.698 13 O -0.397 6.397 14 C -0.062 4.062 15 C -0.182 4.182 16 C -0.035 4.035 17 O -0.286 6.286 18 C 0.019 3.981 19 H 0.132 0.868 20 C -0.167 4.167 21 C -0.159 4.159 22 C -0.154 4.154 23 C -0.144 4.144 24 H 0.076 0.924 25 H 0.046 0.954 26 H 0.042 0.958 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.114 0.886 30 H 0.105 0.895 31 H 0.083 0.917 32 H 0.113 0.887 33 H 0.097 0.903 34 H 0.093 0.907 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.089 0.911 38 H 0.083 0.917 39 H 0.093 0.907 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 22.120 -7.319 1.155 23.328 hybrid contribution -0.001 1.063 0.094 1.067 sum 22.119 -6.257 1.249 23.021 Atomic orbital electron populations 1.69892 1.06289 1.27240 1.49991 1.24932 0.94758 0.99162 0.94089 0.86753 0.80404 0.83301 0.78753 1.20031 1.21124 1.18802 1.20839 0.88244 0.95069 1.52514 0.90652 1.19615 0.97038 0.90025 0.97853 1.23439 0.72154 1.01717 1.01861 1.86477 1.26305 1.31585 1.82697 1.23499 0.91667 0.82303 0.72352 1.90593 1.66790 1.36462 1.45866 1.20488 0.89398 0.97431 0.98853 1.23722 0.99882 0.99340 0.95230 1.23737 0.95630 0.82698 1.01450 1.89227 1.74674 1.32147 1.32525 1.21833 0.98881 0.93420 0.83985 0.86753 1.21567 0.98197 0.98605 0.98313 1.21571 0.97537 0.97071 0.99675 1.21195 0.98081 0.98436 0.97720 1.20441 1.01064 0.98741 0.94108 0.92392 0.95392 0.95825 0.91666 0.91646 0.88583 0.89487 0.91674 0.88688 0.90311 0.90693 0.91566 0.91386 0.91142 0.91708 0.90722 0.90356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.26 13.96 55.43 0.77 -26.48 16 2 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 3 Si 0.88 21.24 27.47 -169.99 -4.67 16.57 16 4 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.26 -6.09 6.54 56.52 0.37 -5.72 16 7 C -0.53 -14.99 9.66 -34.44 -0.33 -15.33 16 8 H 0.08 2.29 7.99 -52.48 -0.42 1.87 16 9 C -0.01 -0.19 4.42 -27.88 -0.12 -0.31 16 10 C 0.08 1.73 5.40 37.16 0.20 1.93 16 11 O -0.35 -6.62 9.62 -39.26 -0.38 -7.00 16 12 C 0.46 7.83 5.61 36.01 0.20 8.03 16 13 O -0.51 -9.99 14.59 -18.75 -0.27 -10.26 16 14 C -0.06 -0.77 0.81 -157.31 -0.13 -0.89 16 15 C -0.14 -1.60 6.08 -24.27 -0.15 -1.75 16 16 C 0.04 0.41 7.63 38.38 0.29 0.70 16 17 O -0.37 -4.80 11.21 -35.23 -0.39 -5.19 16 18 C 0.08 0.97 2.95 -28.78 -0.08 0.89 16 19 H 0.12 1.76 5.74 -51.93 -0.30 1.46 16 20 C -0.13 -1.29 5.61 -27.81 -0.16 -1.45 16 21 C -0.12 -0.99 5.96 -26.83 -0.16 -1.15 16 22 C -0.12 -1.01 5.90 -27.70 -0.16 -1.18 16 23 C -0.11 -1.14 5.16 -29.51 -0.15 -1.29 16 24 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 25 H 0.03 0.66 7.20 -51.93 -0.37 0.29 16 26 H 0.02 0.55 7.57 -51.93 -0.39 0.16 16 27 H 0.06 1.42 8.13 -51.93 -0.42 0.99 16 28 H 0.07 1.41 8.13 -51.93 -0.42 0.99 16 29 H 0.10 0.87 7.11 -51.93 -0.37 0.50 16 30 H 0.09 1.10 7.64 -51.93 -0.40 0.70 16 31 H 0.07 0.52 6.63 -51.93 -0.34 0.18 16 32 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.08 0.75 8.04 -51.93 -0.42 0.33 16 34 H 0.07 0.73 8.08 -51.93 -0.42 0.31 16 35 H 0.07 0.52 6.50 -51.93 -0.34 0.18 16 36 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.06 0.58 8.08 -51.93 -0.42 0.16 16 39 H 0.07 0.92 7.08 -51.93 -0.37 0.55 16 40 H 0.08 0.72 6.90 -51.93 -0.36 0.36 16 LS Contribution 311.83 15.07 4.70 4.70 Total: -1.00 -31.64 311.83 -7.29 -38.92 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: -6.19 Total: -1.46 kcal Atomic # 6 Polarization: -8.94 SS G_CDS: -0.85 Total: -9.79 kcal Atomic # 7 Polarization: -27.26 SS G_CDS: 0.77 Total: -26.48 kcal Atomic # 8 Polarization: -21.41 SS G_CDS: -1.05 Total: -22.46 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.67 Total: 16.57 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -31.64 -7.29 -38.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000924226433.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.820 kcal (2) G-P(sol) polarization free energy of solvation -31.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds