Wall clock time and date at job start Mon Mar 30 2020 06:58:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86805 * 120.00278 * 2 1 4 4 H 1.48495 * 109.47076 * 270.00109 * 3 2 1 5 5 H 1.48498 * 109.47020 * 29.99991 * 3 2 1 6 6 H 1.48500 * 109.47046 * 149.99812 * 3 2 1 7 7 C 1.37879 * 120.00250 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99395 * 0.02562 * 7 2 1 9 9 C 1.50701 * 120.00291 * 179.97438 * 7 2 1 10 10 C 1.53006 * 109.46768 * 180.02562 * 9 7 2 11 11 O 1.45198 * 109.46677 * 179.97438 * 10 9 7 12 12 C 1.34230 * 116.99836 * 179.97438 * 11 10 9 13 13 O 1.20825 * 120.00164 * 0.02562 * 12 11 10 14 14 C 1.50699 * 120.00045 * 179.97438 * 12 11 10 15 15 C 1.55334 * 106.09884 * 301.26548 * 14 12 11 16 16 C 1.55303 * 101.35778 * 225.21132 * 15 14 12 17 17 O 1.44754 * 102.92452 * 38.15720 * 16 15 14 18 18 C 1.44198 * 106.13416 * 318.88575 * 17 16 15 19 19 H 1.09003 * 107.13011 * 142.06742 * 18 17 16 20 20 C 1.51002 * 110.26729 * 258.65793 * 18 17 16 21 21 C 1.52862 * 110.83392 * 92.47702 * 20 18 17 22 22 C 1.52943 * 107.24825 * 64.60477 * 21 20 18 23 23 C 1.49265 * 107.25684 * 59.30366 * 14 12 11 24 24 H 0.97006 * 120.00169 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.47147 * 59.99997 * 9 7 2 26 26 H 1.08992 * 109.46891 * 299.99748 * 9 7 2 27 27 H 1.08998 * 109.47367 * 60.00037 * 10 9 7 28 28 H 1.09004 * 109.47060 * 299.99915 * 10 9 7 29 29 H 1.08995 * 111.06047 * 107.18743 * 15 14 12 30 30 H 1.09006 * 111.07958 * 343.23777 * 15 14 12 31 31 H 1.08992 * 110.72066 * 279.79669 * 16 15 14 32 32 H 1.09004 * 110.87144 * 156.59041 * 16 15 14 33 33 H 1.08998 * 109.20474 * 332.12793 * 20 18 17 34 34 H 1.09001 * 109.20056 * 212.82777 * 20 18 17 35 35 H 1.08997 * 109.89964 * 305.17229 * 21 20 18 36 36 H 1.09000 * 109.96152 * 184.07317 * 21 20 18 37 37 H 1.09001 * 109.30157 * 174.69137 * 22 21 20 38 38 H 1.08998 * 109.30412 * 55.30462 * 22 21 20 39 39 H 1.09002 * 107.89521 * 2.26308 * 23 14 12 40 40 H 1.09004 * 107.89182 * 246.14330 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 1.4644 -2.1293 -0.0014 9 6 3.5115 -1.1940 -0.0011 10 6 4.0214 -2.6366 -0.0023 11 8 5.4734 -2.6366 -0.0035 12 6 6.0828 -3.8326 -0.0040 13 8 5.4247 -4.8460 -0.0041 14 6 7.5877 -3.9115 -0.0058 15 6 8.0569 -3.1608 -1.2822 16 6 9.1216 -4.1435 -1.8411 17 8 8.5377 -5.4405 -1.5726 18 6 7.9564 -5.3534 -0.2559 19 1 7.0248 -5.9191 -0.2781 20 6 8.8602 -6.0111 0.7594 21 6 9.8123 -4.9899 1.3819 22 6 8.9575 -3.9887 2.1604 23 6 8.0695 -3.2079 1.2192 24 1 -0.4851 0.8401 -0.0004 25 1 3.8752 -0.6804 0.8888 26 1 3.8745 -0.6801 -0.8911 27 1 3.6578 -3.1499 -0.8924 28 1 3.6584 -3.1510 0.8875 29 1 8.5055 -2.2002 -1.0290 30 1 7.2346 -3.0327 -1.9863 31 1 10.0674 -4.0293 -1.3117 32 1 9.2607 -3.9973 -2.9123 33 1 9.4421 -6.7915 0.2692 34 1 8.2511 -6.4588 1.5448 35 1 10.3668 -4.4738 0.5982 36 1 10.5051 -5.4909 2.0580 37 1 9.6093 -3.2988 2.6965 38 1 8.3378 -4.5257 2.8784 39 1 7.1959 -2.8766 1.7806 40 1 8.6164 -2.3199 0.9021 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000924226433.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:39 Heat of formation + Delta-G solvation = -163.252893 kcal Electronic energy + Delta-G solvation = -21427.756908 eV Core-core repulsion = 18206.255390 eV Total energy + Delta-G solvation = -3221.501518 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.77849 -40.53640 -37.84703 -36.93138 -35.47112 -34.26378 -32.71709 -31.12584 -30.02342 -27.41993 -24.91744 -24.14568 -23.30987 -22.72717 -22.12771 -20.05515 -19.14643 -18.52362 -17.90252 -17.64653 -16.89969 -16.57244 -16.33013 -15.88490 -15.67969 -15.13328 -15.09358 -14.68432 -14.59469 -13.96603 -13.71986 -13.47881 -13.26777 -13.17769 -12.96406 -12.83185 -12.59258 -12.51821 -12.46341 -12.14207 -11.83802 -11.60107 -11.57076 -11.56230 -11.47305 -11.14905 -11.10377 -10.83941 -10.48531 -8.36868 -6.46002 1.02188 1.36805 1.38691 1.47674 1.51629 2.32554 2.80675 2.97939 3.11504 3.31913 3.59804 3.75755 3.95125 4.00237 4.08405 4.09775 4.10793 4.19166 4.32043 4.36745 4.53676 4.54943 4.73734 4.78395 4.83156 4.88809 4.91478 4.95302 4.99446 5.11521 5.17002 5.23540 5.27199 5.33903 5.43915 5.47234 5.48596 5.82736 6.12141 6.54586 6.60053 7.19306 8.79392 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.031745 B = 0.004304 C = 0.004250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.823881 B = 6503.490332 C = 6586.791064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.013 3.987 3 Si 0.956 3.044 4 H -0.262 1.262 5 H -0.280 1.280 6 H -0.242 1.242 7 C -0.546 4.546 8 H 0.032 0.968 9 C 0.000 4.000 10 C 0.091 3.909 11 O -0.349 6.349 12 C 0.453 3.547 13 O -0.542 6.542 14 C -0.050 4.050 15 C -0.146 4.146 16 C 0.041 3.959 17 O -0.389 6.389 18 C 0.078 3.922 19 H 0.077 0.923 20 C -0.127 4.127 21 C -0.114 4.114 22 C -0.115 4.115 23 C -0.108 4.108 24 H 0.271 0.729 25 H 0.038 0.962 26 H 0.036 0.964 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.125 0.875 30 H 0.065 0.935 31 H 0.094 0.906 32 H 0.110 0.890 33 H 0.084 0.916 34 H 0.070 0.930 35 H 0.077 0.923 36 H 0.088 0.912 37 H 0.094 0.906 38 H 0.055 0.945 39 H 0.054 0.946 40 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.472 -5.256 1.606 27.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.186 4.186 3 Si 0.778 3.222 4 H -0.187 1.187 5 H -0.205 1.205 6 H -0.165 1.165 7 C -0.584 4.584 8 H 0.051 0.949 9 C -0.037 4.037 10 C 0.018 3.982 11 O -0.265 6.265 12 C 0.298 3.702 13 O -0.432 6.432 14 C -0.051 4.051 15 C -0.183 4.183 16 C -0.034 4.034 17 O -0.309 6.309 18 C 0.020 3.980 19 H 0.095 0.905 20 C -0.165 4.165 21 C -0.151 4.151 22 C -0.152 4.152 23 C -0.145 4.145 24 H 0.080 0.920 25 H 0.056 0.944 26 H 0.054 0.946 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.143 0.857 30 H 0.084 0.916 31 H 0.112 0.888 32 H 0.128 0.872 33 H 0.102 0.898 34 H 0.088 0.912 35 H 0.096 0.904 36 H 0.106 0.894 37 H 0.113 0.887 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 26.043 -5.609 1.464 26.681 hybrid contribution -1.284 0.390 -0.042 1.343 sum 24.760 -5.218 1.423 25.343 Atomic orbital electron populations 1.70043 1.08419 1.28724 1.51183 1.25973 0.95674 1.03661 0.93250 0.85582 0.79580 0.77464 0.79619 1.18704 1.20521 1.16517 1.21110 0.90750 0.93779 1.52776 0.94949 1.19437 0.94105 0.91553 0.98616 1.22995 0.74163 1.00145 1.00893 1.86462 1.24288 1.32722 1.83057 1.24609 0.93625 0.81135 0.70852 1.90590 1.68011 1.37357 1.47243 1.20698 0.85265 0.98155 1.01002 1.23809 0.99799 1.00929 0.93793 1.23978 0.95951 0.80624 1.02889 1.89203 1.75080 1.34011 1.32636 1.21776 0.98230 0.93007 0.84943 0.90510 1.21545 0.98191 0.99235 0.97495 1.21569 0.97113 0.96332 1.00128 1.21218 0.98015 0.98823 0.97192 1.20523 1.00985 0.99729 0.93255 0.91976 0.94376 0.94611 0.92861 0.92622 0.85680 0.91600 0.88809 0.87170 0.89764 0.91162 0.90408 0.89359 0.88703 0.92600 0.92700 0.87828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.81 13.96 21.45 0.30 -58.51 16 2 C 0.01 0.73 5.47 84.66 0.46 1.19 16 3 Si 0.96 42.95 27.47 68.60 1.88 44.84 16 4 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 5 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 6 H -0.24 -9.97 6.54 99.48 0.65 -9.32 16 7 C -0.55 -31.85 9.66 25.60 0.25 -31.60 16 8 H 0.03 2.09 7.99 -2.91 -0.02 2.07 16 9 C 0.00 0.01 4.42 29.85 0.13 0.15 16 10 C 0.09 4.01 5.40 71.98 0.39 4.40 16 11 O -0.35 -13.01 9.62 -51.42 -0.49 -13.51 16 12 C 0.45 15.68 5.61 71.24 0.40 16.08 16 13 O -0.54 -22.36 14.59 21.97 0.32 -22.04 16 14 C -0.05 -1.20 0.81 -54.00 -0.04 -1.25 16 15 C -0.15 -2.89 6.08 32.19 0.20 -2.69 16 16 C 0.04 0.69 7.63 72.77 0.56 1.25 16 17 O -0.39 -9.74 11.21 -148.98 -1.67 -11.41 16 18 C 0.08 1.95 2.95 29.27 0.09 2.03 16 19 H 0.08 2.49 5.74 -2.39 -0.01 2.48 16 20 C -0.13 -2.33 5.61 29.90 0.17 -2.17 16 21 C -0.11 -1.44 5.96 30.53 0.18 -1.26 16 22 C -0.12 -1.63 5.90 29.97 0.18 -1.45 16 23 C -0.11 -2.03 5.16 28.79 0.15 -1.88 16 24 H 0.27 15.59 8.31 -92.70 -0.77 14.82 16 25 H 0.04 1.74 7.20 -2.39 -0.02 1.72 16 26 H 0.04 1.62 7.57 -2.39 -0.02 1.60 16 27 H 0.05 2.43 8.13 -2.39 -0.02 2.41 16 28 H 0.06 2.51 8.13 -2.38 -0.02 2.49 16 29 H 0.13 1.74 7.11 -2.39 -0.02 1.72 16 30 H 0.07 1.59 7.64 -2.38 -0.02 1.58 16 31 H 0.09 1.07 6.63 -2.39 -0.02 1.05 16 32 H 0.11 1.51 8.14 -2.38 -0.02 1.50 16 33 H 0.08 1.45 8.04 -2.39 -0.02 1.43 16 34 H 0.07 1.33 8.08 -2.39 -0.02 1.31 16 35 H 0.08 0.84 6.50 -2.39 -0.02 0.82 16 36 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.06 0.89 8.08 -2.39 -0.02 0.87 16 39 H 0.05 1.27 7.08 -2.39 -0.02 1.25 16 40 H 0.10 1.44 6.90 -2.39 -0.02 1.43 16 Total: -1.00 -71.37 311.83 4.41 -66.97 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: 0.97 Total: 10.87 kcal Atomic # 6 Polarization: -20.30 SS G_CDS: 3.10 Total: -17.20 kcal Atomic # 7 Polarization: -58.81 SS G_CDS: 0.30 Total: -58.51 kcal Atomic # 8 Polarization: -45.11 SS G_CDS: -1.84 Total: -46.95 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 1.88 Total: 44.84 kcal Total: -71.37 4.41 -66.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000924226433.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.288 kcal (2) G-P(sol) polarization free energy of solvation -71.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds