Wall clock time and date at job start Mon Mar 30 2020 06:58:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86793 * 120.00209 * 2 1 4 4 H 1.48503 * 109.47357 * 269.99971 * 3 2 1 5 5 H 1.48504 * 109.47293 * 29.99896 * 3 2 1 6 6 H 1.48498 * 109.47449 * 149.99896 * 3 2 1 7 7 C 1.37877 * 119.99741 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99997 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00196 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47189 * 180.02562 * 9 7 2 11 11 O 1.45197 * 109.46688 * 179.97438 * 10 9 7 12 12 C 1.34230 * 116.99422 * 179.97438 * 11 10 9 13 13 O 1.20822 * 120.00429 * 0.02562 * 12 11 10 14 14 C 1.50706 * 120.00012 * 180.02562 * 12 11 10 15 15 C 1.54384 * 109.62952 * 64.85919 * 14 12 11 16 16 C 1.53596 * 101.93863 * 79.46275 * 15 14 12 17 17 O 1.43438 * 107.44262 * 20.70469 * 16 15 14 18 18 C 1.44883 * 109.42759 * 4.59243 * 17 16 15 19 19 H 1.09007 * 112.64199 * 211.05044 * 18 17 16 20 20 C 1.52203 * 106.23221 * 89.16087 * 18 17 16 21 21 C 1.52581 * 111.20078 * 195.31610 * 20 18 17 22 22 C 1.53332 * 108.41905 * 62.06144 * 21 20 18 23 23 C 1.50799 * 109.63646 * 300.70194 * 14 12 11 24 24 H 0.96996 * 119.99946 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.47148 * 59.99792 * 9 7 2 26 26 H 1.08998 * 109.46897 * 299.99906 * 9 7 2 27 27 H 1.08997 * 109.46697 * 60.00140 * 10 9 7 28 28 H 1.09001 * 109.46765 * 300.00156 * 10 9 7 29 29 H 1.08999 * 111.03887 * 197.75642 * 15 14 12 30 30 H 1.09004 * 111.03616 * 321.69663 * 15 14 12 31 31 H 1.08999 * 109.93290 * 261.20742 * 16 15 14 32 32 H 1.09006 * 109.92666 * 140.19255 * 16 15 14 33 33 H 1.09002 * 109.32991 * 74.69911 * 20 18 17 34 34 H 1.08998 * 108.77614 * 315.57404 * 20 18 17 35 35 H 1.09003 * 109.67758 * 302.33719 * 21 20 18 36 36 H 1.08997 * 109.68036 * 181.79611 * 21 20 18 37 37 H 1.08999 * 109.73703 * 176.31769 * 22 21 20 38 38 H 1.08994 * 109.77319 * 55.64394 * 22 21 20 39 39 H 1.09004 * 109.02828 * 306.30045 * 23 14 12 40 40 H 1.08996 * 109.03513 * 65.22432 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2452 -3.6622 0.0027 11 8 1.5191 -4.9195 0.0045 12 6 2.2502 -6.0453 0.0050 13 8 3.4568 -5.9821 0.0046 14 6 1.5660 -7.3881 0.0062 15 6 0.7797 -7.5707 -1.3097 16 6 1.8918 -7.9675 -2.2920 17 8 2.9940 -8.4601 -1.5174 18 6 2.6183 -8.5048 -0.1188 19 1 3.4638 -8.3371 0.5484 20 6 2.0008 -9.8767 0.1121 21 6 1.2297 -9.9203 1.4280 22 6 0.0823 -8.9062 1.3510 23 6 0.6903 -7.5095 1.2278 24 1 -0.4850 0.8400 -0.0004 25 1 0.6240 -2.5575 -0.8880 26 1 0.6247 -2.5563 0.8920 27 1 2.8718 -3.6036 0.8927 28 1 2.8719 -3.6052 -0.8873 29 1 0.0392 -8.3650 -1.2161 30 1 0.3116 -6.6360 -1.6187 31 1 2.2050 -7.0979 -2.8698 32 1 1.5335 -8.7480 -2.9633 33 1 2.7899 -10.6284 0.1345 34 1 1.3194 -10.0976 -0.7095 35 1 1.8946 -9.6603 2.2518 36 1 0.8256 -10.9206 1.5837 37 1 -0.5229 -8.9657 2.2557 38 1 -0.5374 -9.1160 0.4793 39 1 1.2879 -7.3024 2.1156 40 1 -0.1144 -6.7772 1.1626 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000924226436.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:43 Heat of formation + Delta-G solvation = -155.792160 kcal Electronic energy + Delta-G solvation = -21389.080766 eV Core-core repulsion = 18167.902769 eV Total energy + Delta-G solvation = -3221.177997 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.48721 -39.12703 -36.22949 -36.01272 -33.42294 -32.76278 -30.26180 -29.89693 -29.35158 -25.33580 -23.72997 -23.29280 -22.04702 -21.20137 -20.56954 -19.11181 -17.50632 -16.68547 -16.26812 -16.03506 -15.91723 -15.19162 -14.98279 -14.57304 -14.42273 -14.09428 -13.65573 -13.21191 -13.12027 -12.68365 -12.37421 -12.24726 -11.95401 -11.77634 -11.72289 -11.25457 -11.18407 -11.04946 -11.00478 -10.77071 -10.75334 -10.67383 -10.27828 -10.04197 -9.66166 -9.59393 -9.50121 -9.30473 -8.46002 -6.12170 -4.16506 2.53647 3.02771 3.27607 3.33753 3.38218 3.65381 4.14982 4.35930 4.49498 4.61986 4.72676 4.75343 4.88259 4.96186 5.02363 5.19662 5.21872 5.24536 5.31521 5.51737 5.59514 5.61100 5.67465 5.76932 5.81170 5.87644 5.91397 5.95722 6.07330 6.08157 6.12031 6.19179 6.61794 6.86336 6.97602 7.53664 7.59769 7.84938 8.17189 8.25120 8.88943 9.48069 10.99323 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.035321 B = 0.004035 C = 0.003891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.529150 B = 6937.465989 C = 7194.800071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.899 3.101 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.527 4.527 8 H 0.059 0.941 9 C 0.026 3.974 10 C 0.074 3.926 11 O -0.354 6.354 12 C 0.464 3.536 13 O -0.505 6.505 14 C -0.074 4.074 15 C -0.146 4.146 16 C 0.045 3.955 17 O -0.374 6.374 18 C 0.105 3.895 19 H 0.113 0.887 20 C -0.136 4.136 21 C -0.122 4.122 22 C -0.118 4.118 23 C -0.105 4.105 24 H 0.263 0.737 25 H 0.028 0.972 26 H 0.028 0.972 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.093 0.907 30 H 0.097 0.903 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.072 0.928 38 H 0.068 0.932 39 H 0.071 0.929 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.164 -20.325 0.670 20.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.141 4.141 3 Si 0.727 3.273 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.565 4.565 8 H 0.077 0.923 9 C -0.011 4.011 10 C 0.002 3.998 11 O -0.270 6.270 12 C 0.305 3.695 13 O -0.393 6.393 14 C -0.076 4.076 15 C -0.183 4.183 16 C -0.031 4.031 17 O -0.293 6.293 18 C 0.048 3.952 19 H 0.130 0.870 20 C -0.174 4.174 21 C -0.159 4.159 22 C -0.156 4.156 23 C -0.142 4.142 24 H 0.073 0.927 25 H 0.046 0.954 26 H 0.046 0.954 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.111 0.889 30 H 0.116 0.884 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.091 0.909 38 H 0.087 0.913 39 H 0.090 0.910 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.755 -20.182 0.574 20.205 hybrid contribution 0.377 1.184 -0.006 1.243 sum -0.379 -18.998 0.568 19.011 Atomic orbital electron populations 1.69972 1.06089 1.26994 1.49804 1.24975 0.94915 0.99376 0.94825 0.86472 0.79786 0.82797 0.78271 1.20461 1.21028 1.19704 1.20985 0.93194 0.90130 1.52195 0.92272 1.19159 0.94138 0.89014 0.98806 1.23656 0.96410 0.78804 1.00929 1.86504 1.42314 1.15637 1.82545 1.23137 0.86424 0.86907 0.72989 1.90641 1.15543 1.88045 1.45047 1.21336 0.97051 0.90527 0.98654 1.22990 0.98475 1.04357 0.92479 1.23029 0.86715 0.99123 0.94266 1.88743 1.37087 1.86275 1.17177 1.22787 0.96138 0.92105 0.84205 0.86960 1.21863 1.00334 0.96835 0.98362 1.21550 0.97423 0.99471 0.97464 1.21629 0.97621 0.93821 1.02492 1.20931 0.99195 0.98765 0.95319 0.92709 0.95403 0.95380 0.92369 0.92366 0.88866 0.88443 0.91013 0.91199 0.90875 0.91284 0.91447 0.91359 0.90894 0.91305 0.91020 0.89619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.28 13.29 55.43 0.74 -25.55 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 3 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 5 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.53 -14.87 9.11 -34.44 -0.31 -15.18 16 8 H 0.06 1.62 7.74 -52.48 -0.41 1.22 16 9 C 0.03 0.68 5.35 -27.88 -0.15 0.53 16 10 C 0.07 1.68 5.40 37.16 0.20 1.88 16 11 O -0.35 -7.08 9.98 -39.26 -0.39 -7.47 16 12 C 0.46 8.34 6.08 36.01 0.22 8.56 16 13 O -0.50 -10.46 15.42 -19.85 -0.31 -10.77 16 14 C -0.07 -0.98 0.67 -155.54 -0.10 -1.08 16 15 C -0.15 -1.66 5.28 -25.70 -0.14 -1.80 16 16 C 0.05 0.56 7.08 37.47 0.27 0.82 16 17 O -0.37 -5.47 10.75 -35.28 -0.38 -5.85 16 18 C 0.10 1.34 3.01 -26.64 -0.08 1.26 16 19 H 0.11 1.55 7.64 -51.93 -0.40 1.15 16 20 C -0.14 -1.27 5.07 -27.35 -0.14 -1.41 16 21 C -0.12 -0.95 5.93 -26.77 -0.16 -1.11 16 22 C -0.12 -0.96 5.79 -26.65 -0.15 -1.12 16 23 C -0.10 -1.16 4.58 -27.93 -0.13 -1.28 16 24 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 25 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.06 1.31 8.13 -51.93 -0.42 0.88 16 28 H 0.06 1.32 8.13 -51.93 -0.42 0.89 16 29 H 0.09 0.82 6.02 -51.93 -0.31 0.51 16 30 H 0.10 1.19 7.91 -51.93 -0.41 0.78 16 31 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.61 6.95 -51.93 -0.36 0.25 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.51 6.69 -51.93 -0.35 0.17 16 39 H 0.07 0.81 8.12 -51.93 -0.42 0.39 16 40 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 318.02 15.07 4.79 4.79 Total: -1.00 -31.65 318.02 -7.79 -39.44 By element: Atomic # 1 Polarization: 3.74 SS G_CDS: -6.44 Total: -2.70 kcal Atomic # 6 Polarization: -7.52 SS G_CDS: -0.78 Total: -8.29 kcal Atomic # 7 Polarization: -26.28 SS G_CDS: 0.74 Total: -25.55 kcal Atomic # 8 Polarization: -23.01 SS G_CDS: -1.08 Total: -24.09 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -31.65 -7.79 -39.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000924226436.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.353 kcal (2) G-P(sol) polarization free energy of solvation -31.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds