Wall clock time and date at job start Mon Mar 30 2020 06:58:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86793 * 120.00209 * 2 1 4 4 H 1.48503 * 109.47357 * 269.99971 * 3 2 1 5 5 H 1.48504 * 109.47293 * 29.99896 * 3 2 1 6 6 H 1.48498 * 109.47449 * 149.99896 * 3 2 1 7 7 C 1.37877 * 119.99741 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99997 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00196 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47189 * 180.02562 * 9 7 2 11 11 O 1.45197 * 109.46688 * 179.97438 * 10 9 7 12 12 C 1.34230 * 116.99422 * 179.97438 * 11 10 9 13 13 O 1.20822 * 120.00429 * 0.02562 * 12 11 10 14 14 C 1.50706 * 120.00012 * 180.02562 * 12 11 10 15 15 C 1.54384 * 109.62952 * 64.85919 * 14 12 11 16 16 C 1.53596 * 101.93863 * 79.46275 * 15 14 12 17 17 O 1.43438 * 107.44262 * 20.70469 * 16 15 14 18 18 C 1.44883 * 109.42759 * 4.59243 * 17 16 15 19 19 H 1.09007 * 112.64199 * 211.05044 * 18 17 16 20 20 C 1.52203 * 106.23221 * 89.16087 * 18 17 16 21 21 C 1.52581 * 111.20078 * 195.31610 * 20 18 17 22 22 C 1.53332 * 108.41905 * 62.06144 * 21 20 18 23 23 C 1.50799 * 109.63646 * 300.70194 * 14 12 11 24 24 H 0.96996 * 119.99946 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.47148 * 59.99792 * 9 7 2 26 26 H 1.08998 * 109.46897 * 299.99906 * 9 7 2 27 27 H 1.08997 * 109.46697 * 60.00140 * 10 9 7 28 28 H 1.09001 * 109.46765 * 300.00156 * 10 9 7 29 29 H 1.08999 * 111.03887 * 197.75642 * 15 14 12 30 30 H 1.09004 * 111.03616 * 321.69663 * 15 14 12 31 31 H 1.08999 * 109.93290 * 261.20742 * 16 15 14 32 32 H 1.09006 * 109.92666 * 140.19255 * 16 15 14 33 33 H 1.09002 * 109.32991 * 74.69911 * 20 18 17 34 34 H 1.08998 * 108.77614 * 315.57404 * 20 18 17 35 35 H 1.09003 * 109.67758 * 302.33719 * 21 20 18 36 36 H 1.08997 * 109.68036 * 181.79611 * 21 20 18 37 37 H 1.08999 * 109.73703 * 176.31769 * 22 21 20 38 38 H 1.08994 * 109.77319 * 55.64394 * 22 21 20 39 39 H 1.09004 * 109.02828 * 306.30045 * 23 14 12 40 40 H 1.08996 * 109.03513 * 65.22432 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2452 -3.6622 0.0027 11 8 1.5191 -4.9195 0.0045 12 6 2.2502 -6.0453 0.0050 13 8 3.4568 -5.9821 0.0046 14 6 1.5660 -7.3881 0.0062 15 6 0.7797 -7.5707 -1.3097 16 6 1.8918 -7.9675 -2.2920 17 8 2.9940 -8.4601 -1.5174 18 6 2.6183 -8.5048 -0.1188 19 1 3.4638 -8.3371 0.5484 20 6 2.0008 -9.8767 0.1121 21 6 1.2297 -9.9203 1.4280 22 6 0.0823 -8.9062 1.3510 23 6 0.6903 -7.5095 1.2278 24 1 -0.4850 0.8400 -0.0004 25 1 0.6240 -2.5575 -0.8880 26 1 0.6247 -2.5563 0.8920 27 1 2.8718 -3.6036 0.8927 28 1 2.8719 -3.6052 -0.8873 29 1 0.0392 -8.3650 -1.2161 30 1 0.3116 -6.6360 -1.6187 31 1 2.2050 -7.0979 -2.8698 32 1 1.5335 -8.7480 -2.9633 33 1 2.7899 -10.6284 0.1345 34 1 1.3194 -10.0976 -0.7095 35 1 1.8946 -9.6603 2.2518 36 1 0.8256 -10.9206 1.5837 37 1 -0.5229 -8.9657 2.2557 38 1 -0.5374 -9.1160 0.4793 39 1 1.2879 -7.3024 2.1156 40 1 -0.1144 -6.7772 1.1626 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000924226436.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:43 Heat of formation + Delta-G solvation = -174.348440 kcal Electronic energy + Delta-G solvation = -21389.885426 eV Core-core repulsion = 18167.902769 eV Total energy + Delta-G solvation = -3221.982657 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.65138 -40.53531 -37.70165 -37.07455 -35.49696 -33.79342 -32.25701 -30.75926 -30.31612 -27.27503 -24.99148 -24.19382 -23.09816 -22.89081 -21.93178 -20.06412 -19.00002 -18.33928 -17.87462 -17.66877 -17.02199 -16.59163 -16.32761 -15.89004 -15.33540 -15.16211 -15.00045 -14.56346 -14.40585 -14.04326 -13.96741 -13.28477 -13.13898 -13.04322 -12.85399 -12.67604 -12.63333 -12.56972 -12.56755 -12.11886 -11.90950 -11.78733 -11.56047 -11.53341 -11.47642 -11.11607 -11.04631 -10.64014 -10.47670 -8.29816 -6.43290 1.06590 1.38904 1.41040 1.51170 1.60807 2.37586 2.67106 3.04529 3.15731 3.36414 3.69522 3.78412 3.95046 4.04326 4.10578 4.14417 4.15936 4.19758 4.25340 4.36573 4.45614 4.62634 4.70510 4.73196 4.75206 4.87538 4.95060 5.01679 5.14735 5.16902 5.21168 5.28059 5.33893 5.41814 5.48984 5.50887 5.69968 5.88955 6.03167 6.63068 6.70100 7.26607 8.82704 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.035321 B = 0.004035 C = 0.003891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.529150 B = 6937.465989 C = 7194.800071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.009 3.991 3 Si 0.973 3.027 4 H -0.270 1.270 5 H -0.276 1.276 6 H -0.265 1.265 7 C -0.554 4.554 8 H 0.062 0.938 9 C 0.035 3.965 10 C 0.090 3.910 11 O -0.358 6.358 12 C 0.458 3.542 13 O -0.536 6.536 14 C -0.069 4.069 15 C -0.139 4.139 16 C 0.040 3.960 17 O -0.400 6.400 18 C 0.101 3.899 19 H 0.092 0.908 20 C -0.127 4.127 21 C -0.118 4.118 22 C -0.111 4.111 23 C -0.105 4.105 24 H 0.269 0.731 25 H 0.008 0.992 26 H 0.008 0.992 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.131 0.869 30 H 0.086 0.914 31 H 0.051 0.949 32 H 0.102 0.898 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.063 0.937 36 H 0.093 0.907 37 H 0.089 0.911 38 H 0.084 0.916 39 H 0.062 0.938 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.777 -21.749 0.788 21.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.190 4.190 3 Si 0.796 3.204 4 H -0.195 1.195 5 H -0.201 1.201 6 H -0.189 1.189 7 C -0.591 4.591 8 H 0.080 0.920 9 C -0.002 4.002 10 C 0.016 3.984 11 O -0.274 6.274 12 C 0.302 3.698 13 O -0.426 6.426 14 C -0.071 4.071 15 C -0.177 4.177 16 C -0.036 4.036 17 O -0.320 6.320 18 C 0.044 3.956 19 H 0.110 0.890 20 C -0.165 4.165 21 C -0.156 4.156 22 C -0.148 4.148 23 C -0.142 4.142 24 H 0.078 0.922 25 H 0.026 0.974 26 H 0.027 0.973 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.149 0.851 30 H 0.105 0.895 31 H 0.069 0.931 32 H 0.120 0.880 33 H 0.097 0.903 34 H 0.100 0.900 35 H 0.081 0.919 36 H 0.112 0.888 37 H 0.107 0.893 38 H 0.102 0.898 39 H 0.081 0.919 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.372 -21.628 0.694 21.683 hybrid contribution 0.585 1.594 -0.052 1.699 sum -0.788 -20.034 0.642 20.060 Atomic orbital electron populations 1.70084 1.07731 1.28343 1.50177 1.25930 0.95849 1.03288 0.93934 0.85336 0.78531 0.77807 0.78716 1.19514 1.20141 1.18900 1.21359 0.93609 0.91333 1.52835 0.91987 1.18951 0.94175 0.90339 0.96782 1.23171 0.95212 0.79362 1.00621 1.86504 1.42343 1.15561 1.82975 1.24308 0.86374 0.87719 0.71373 1.90619 1.17077 1.88417 1.46475 1.21521 0.97616 0.87127 1.00790 1.23061 0.98642 1.05166 0.90785 1.23171 0.86399 0.99515 0.94548 1.88708 1.38651 1.86468 1.18184 1.22903 0.95521 0.93949 0.83235 0.89010 1.21811 1.00785 0.94145 0.99760 1.21570 0.97019 1.00693 0.96297 1.21647 0.97818 0.91305 1.04055 1.20998 0.98439 1.01095 0.93715 0.92240 0.97404 0.97317 0.92511 0.92730 0.85096 0.89521 0.93101 0.87976 0.90253 0.89990 0.91868 0.88831 0.89260 0.89752 0.91904 0.90361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.23 13.29 21.45 0.28 -54.95 16 2 C 0.01 0.53 5.46 84.65 0.46 0.99 16 3 Si 0.97 43.85 29.54 68.60 2.03 45.87 16 4 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 5 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 6 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 7 C -0.55 -31.85 9.11 25.60 0.23 -31.62 16 8 H 0.06 3.45 7.74 -2.91 -0.02 3.42 16 9 C 0.03 1.89 5.35 29.85 0.16 2.05 16 10 C 0.09 4.20 5.40 71.98 0.39 4.58 16 11 O -0.36 -14.81 9.98 -51.41 -0.51 -15.32 16 12 C 0.46 16.95 6.08 71.24 0.43 17.38 16 13 O -0.54 -23.08 15.42 23.03 0.36 -22.73 16 14 C -0.07 -1.78 0.67 -52.85 -0.04 -1.82 16 15 C -0.14 -2.96 5.28 31.26 0.17 -2.79 16 16 C 0.04 0.94 7.08 72.18 0.51 1.45 16 17 O -0.40 -11.52 10.75 -148.94 -1.60 -13.12 16 18 C 0.10 2.50 3.01 30.65 0.09 2.59 16 19 H 0.09 2.60 7.64 -2.38 -0.02 2.58 16 20 C -0.13 -2.03 5.07 30.19 0.15 -1.87 16 21 C -0.12 -1.44 5.93 30.57 0.18 -1.26 16 22 C -0.11 -1.43 5.79 30.65 0.18 -1.25 16 23 C -0.10 -2.19 4.58 29.82 0.14 -2.05 16 24 H 0.27 14.93 8.31 -92.71 -0.77 14.16 16 25 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 26 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 27 H 0.06 2.65 8.13 -2.39 -0.02 2.63 16 28 H 0.05 2.57 8.13 -2.39 -0.02 2.55 16 29 H 0.13 1.80 6.02 -2.39 -0.01 1.78 16 30 H 0.09 2.06 7.91 -2.38 -0.02 2.04 16 31 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.10 1.73 8.14 -2.38 -0.02 1.71 16 33 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.08 1.12 6.95 -2.39 -0.02 1.10 16 35 H 0.06 0.84 8.14 -2.39 -0.02 0.83 16 36 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.08 0.86 6.69 -2.39 -0.02 0.85 16 39 H 0.06 1.40 8.12 -2.39 -0.02 1.38 16 40 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -69.83 318.02 4.62 -65.21 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: 1.01 Total: 8.65 kcal Atomic # 6 Polarization: -16.67 SS G_CDS: 3.06 Total: -13.61 kcal Atomic # 7 Polarization: -55.23 SS G_CDS: 0.28 Total: -54.95 kcal Atomic # 8 Polarization: -49.41 SS G_CDS: -1.76 Total: -51.17 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.87 kcal Total: -69.83 4.62 -65.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000924226436.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.141 kcal (2) G-P(sol) polarization free energy of solvation -69.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds