Wall clock time and date at job start Mon Mar 30 2020 07:05:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99576 * 2 1 4 4 H 1.48494 * 109.47228 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.46793 * 119.99882 * 3 2 1 6 6 H 1.48500 * 109.47000 * 239.99975 * 3 2 1 7 7 C 1.37871 * 120.00147 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00147 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00083 * 0.02562 * 7 2 1 10 10 O 1.42905 * 109.46835 * 180.02562 * 9 7 2 11 11 C 1.42903 * 113.99594 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.46972 * 179.97438 * 11 10 9 13 13 O 1.45210 * 109.47335 * 64.99954 * 12 11 10 14 14 C 1.34228 * 117.00077 * 180.02562 * 13 12 11 15 15 O 1.20820 * 119.99960 * 359.97438 * 14 13 12 16 16 C 1.50703 * 119.99712 * 179.97438 * 14 13 12 17 17 C 1.53002 * 109.46863 * 179.97438 * 16 14 13 18 18 H 1.09006 * 109.63817 * 55.42270 * 17 16 14 19 19 C 1.53022 * 109.64594 * 295.00303 * 17 16 14 20 20 C 1.50062 * 110.14746 * 190.88162 * 19 17 16 21 21 C 1.29443 * 124.07663 * 17.12551 * 20 19 17 22 22 C 1.50066 * 124.07445 * 359.55624 * 21 20 19 23 23 C 1.53007 * 110.15595 * 17.09487 * 22 21 20 24 24 H 0.97005 * 119.99661 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.46850 * 299.99881 * 9 7 2 26 26 H 1.08998 * 109.47115 * 59.99805 * 9 7 2 27 27 H 1.09005 * 109.46851 * 299.99626 * 11 10 9 28 28 H 1.08995 * 109.47252 * 60.00069 * 11 10 9 29 29 H 1.09000 * 109.47310 * 184.99675 * 12 11 10 30 30 H 1.08994 * 109.47524 * 304.99888 * 12 11 10 31 31 H 1.08997 * 109.47319 * 299.99534 * 16 14 13 32 32 H 1.09003 * 109.46683 * 60.00110 * 16 14 13 33 33 H 1.09001 * 109.35683 * 311.08549 * 19 17 16 34 34 H 1.09003 * 109.35924 * 70.80277 * 19 17 16 35 35 H 1.08006 * 117.96448 * 197.15011 * 20 19 17 36 36 H 1.08001 * 117.96148 * 179.53207 * 21 20 19 37 37 H 1.09003 * 109.35597 * 137.31325 * 22 21 20 38 38 H 1.08998 * 109.35717 * 257.03251 * 22 21 20 39 39 H 1.08999 * 109.64889 * 190.90010 * 23 22 21 40 40 H 1.09002 * 109.62657 * 70.26923 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1027 1.6965 1.2125 6 1 3.1028 1.6965 -1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 8 2.1798 -3.5852 0.0017 11 6 1.5653 -4.8754 0.0013 12 6 2.6483 -5.9561 0.0020 13 8 3.3987 -5.8885 1.2433 14 6 4.3934 -6.7755 1.4031 15 8 4.6289 -7.5820 0.5348 16 6 5.2163 -6.7654 2.6656 17 6 6.2739 -7.8687 2.5937 18 1 6.8734 -7.7434 1.6920 19 6 5.5892 -9.2370 2.5702 20 6 6.6031 -10.3258 2.7665 21 6 7.7923 -10.1327 3.2397 22 6 8.3267 -8.7915 3.6492 23 6 7.1766 -7.7991 3.8320 24 1 -0.4850 -0.8401 -0.0004 25 1 0.6241 -2.5566 0.8903 26 1 0.6248 -2.5571 -0.8896 27 1 0.9442 -4.9823 0.8906 28 1 0.9462 -4.9826 -0.8894 29 1 2.1824 -6.9374 -0.0879 30 1 3.3224 -5.7955 -0.8393 31 1 5.7068 -5.7979 2.7718 32 1 4.5673 -6.9401 3.5237 33 1 4.8490 -9.2844 3.3688 34 1 5.0935 -9.3765 1.6094 35 1 6.3232 -11.3332 2.4957 36 1 8.4401 -10.9902 3.3468 37 1 8.8710 -8.8909 4.5884 38 1 9.0018 -8.4207 2.8779 39 1 7.5761 -6.7905 3.9379 40 1 6.6019 -8.0641 4.7196 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000924252568.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:04 Heat of formation + Delta-G solvation = -146.449741 kcal Electronic energy + Delta-G solvation = -19890.713963 eV Core-core repulsion = 16669.941083 eV Total energy + Delta-G solvation = -3220.772879 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.57008 -38.76124 -37.15073 -36.08090 -33.16587 -33.02494 -30.99284 -30.23669 -27.79865 -26.38372 -23.61128 -22.76914 -22.52614 -21.66839 -20.40402 -18.26944 -17.57855 -17.07994 -16.57721 -16.30135 -16.16919 -15.43642 -14.88542 -14.51897 -14.07373 -13.89691 -13.70872 -13.34142 -13.21528 -12.84591 -12.69021 -12.40271 -12.32819 -11.92705 -11.78694 -11.71056 -11.28741 -11.00852 -10.88544 -10.74394 -10.51435 -10.42267 -10.35377 -10.13132 -10.09185 -9.17623 -8.94401 -8.66846 -8.29298 -6.49111 -4.17913 2.08901 2.27953 2.77071 3.42124 3.44843 3.63716 4.34586 4.37576 4.43639 4.55712 4.63179 4.81793 4.91467 5.05887 5.11549 5.15612 5.22382 5.28910 5.33623 5.37622 5.42855 5.48893 5.55412 5.62447 5.71208 5.74020 5.81717 5.90588 5.96567 6.02824 6.15508 6.44120 6.60334 6.69350 6.76102 7.07812 7.81833 7.86203 8.12896 8.59151 8.76793 9.52517 10.91182 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.030783 B = 0.002996 C = 0.002788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.365906 B = 9344.397557 C =10039.216956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.017 3.983 3 Si 1.080 2.920 4 H -0.281 1.281 5 H -0.285 1.285 6 H -0.286 1.286 7 C -0.597 4.597 8 H 0.061 0.939 9 C 0.185 3.815 10 O -0.382 6.382 11 C 0.059 3.941 12 C 0.075 3.925 13 O -0.343 6.343 14 C 0.460 3.540 15 O -0.515 6.515 16 C -0.112 4.112 17 C -0.076 4.076 18 H 0.083 0.917 19 C -0.096 4.096 20 C -0.146 4.146 21 C -0.165 4.165 22 C -0.089 4.089 23 C -0.116 4.116 24 H 0.267 0.733 25 H -0.003 1.003 26 H -0.004 1.004 27 H 0.050 0.950 28 H 0.062 0.938 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.109 0.891 32 H 0.105 0.895 33 H 0.070 0.930 34 H 0.089 0.911 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.070 0.930 40 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.117 -18.997 7.511 23.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.186 4.186 3 Si 0.906 3.094 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.212 1.212 7 C -0.635 4.635 8 H 0.079 0.921 9 C 0.111 3.889 10 O -0.302 6.302 11 C -0.019 4.019 12 C 0.001 3.999 13 O -0.259 6.259 14 C 0.304 3.696 15 O -0.404 6.404 16 C -0.150 4.150 17 C -0.094 4.094 18 H 0.101 0.899 19 C -0.133 4.133 20 C -0.165 4.165 21 C -0.183 4.183 22 C -0.126 4.126 23 C -0.153 4.153 24 H 0.077 0.923 25 H 0.015 0.985 26 H 0.014 0.986 27 H 0.068 0.932 28 H 0.080 0.920 29 H 0.096 0.904 30 H 0.095 0.905 31 H 0.127 0.873 32 H 0.123 0.877 33 H 0.088 0.912 34 H 0.108 0.892 35 H 0.118 0.882 36 H 0.118 0.882 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.089 0.911 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 12.151 -17.542 7.227 22.530 hybrid contribution -0.247 -1.992 -0.205 2.017 sum 11.904 -19.533 7.022 23.928 Atomic orbital electron populations 1.70809 1.06830 1.30409 1.46597 1.25957 0.96413 1.02723 0.93532 0.83396 0.74724 0.74440 0.76796 1.20604 1.21146 1.21199 1.21894 0.95483 0.90354 1.55782 0.92097 1.20322 0.89393 0.84951 0.94248 1.87950 1.34668 1.12411 1.95121 1.22370 0.93516 0.85511 1.00486 1.23158 0.93654 0.98558 0.84494 1.86608 1.43627 1.54343 1.41328 1.23729 0.79011 0.77793 0.89107 1.90607 1.67907 1.38107 1.43795 1.21511 0.97148 1.02330 0.93973 1.21060 0.95507 0.93368 0.99492 0.89856 1.20687 0.97090 0.92269 1.03238 1.22071 0.95596 0.99211 0.99574 1.22022 0.97025 0.98021 1.01258 1.20423 0.97799 0.93033 1.01385 1.21664 0.96593 0.99536 0.97540 0.92324 0.98487 0.98617 0.93200 0.92008 0.90396 0.90503 0.87268 0.87683 0.91158 0.89224 0.88166 0.88239 0.91046 0.90882 0.91140 0.91419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.93 13.65 55.43 0.76 -27.17 16 2 C 0.02 0.50 5.46 -17.82 -0.10 0.40 16 3 Si 1.08 25.48 29.90 -169.99 -5.08 20.40 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 6 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.60 -17.92 9.43 -34.44 -0.32 -18.24 16 8 H 0.06 1.84 7.81 -52.49 -0.41 1.43 16 9 C 0.19 5.08 5.00 36.01 0.18 5.26 16 10 O -0.38 -9.41 10.30 -38.79 -0.40 -9.81 16 11 C 0.06 1.08 6.33 37.16 0.24 1.32 16 12 C 0.07 1.20 5.85 37.16 0.22 1.42 16 13 O -0.34 -5.71 10.19 -42.02 -0.43 -6.14 16 14 C 0.46 6.55 7.71 36.01 0.28 6.83 16 15 O -0.51 -8.15 13.79 -18.75 -0.26 -8.41 16 16 C -0.11 -1.15 5.29 -27.88 -0.15 -1.30 16 17 C -0.08 -0.73 1.88 -90.40 -0.17 -0.90 16 18 H 0.08 0.93 7.96 -51.93 -0.41 0.51 16 19 C -0.10 -0.95 5.03 -28.18 -0.14 -1.10 16 20 C -0.15 -1.34 9.80 -35.90 -0.35 -1.69 16 21 C -0.17 -1.38 9.80 -35.90 -0.35 -1.74 16 22 C -0.09 -0.67 6.12 -28.19 -0.17 -0.84 16 23 C -0.12 -0.90 5.31 -26.52 -0.14 -1.04 16 24 H 0.27 8.10 7.22 -40.82 -0.29 7.81 16 25 H 0.00 -0.07 8.01 -51.93 -0.42 -0.49 16 26 H 0.00 -0.11 8.01 -51.93 -0.42 -0.52 16 27 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 28 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.08 1.03 8.13 -51.93 -0.42 0.61 16 30 H 0.08 1.26 8.13 -51.93 -0.42 0.84 16 31 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.10 0.90 8.11 -51.93 -0.42 0.48 16 33 H 0.07 0.64 8.08 -51.93 -0.42 0.22 16 34 H 0.09 1.06 6.23 -51.93 -0.32 0.74 16 35 H 0.10 0.83 8.06 -52.48 -0.42 0.41 16 36 H 0.10 0.72 8.06 -52.49 -0.42 0.29 16 37 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.07 0.50 8.12 -51.93 -0.42 0.07 16 LS Contribution 332.95 15.07 5.02 5.02 Total: -1.00 -33.70 332.95 -7.94 -41.64 By element: Atomic # 1 Polarization: 2.66 SS G_CDS: -6.56 Total: -3.90 kcal Atomic # 6 Polarization: -10.64 SS G_CDS: -0.99 Total: -11.63 kcal Atomic # 7 Polarization: -27.93 SS G_CDS: 0.76 Total: -27.17 kcal Atomic # 8 Polarization: -23.27 SS G_CDS: -1.09 Total: -24.35 kcal Atomic # 14 Polarization: 25.48 SS G_CDS: -5.08 Total: 20.40 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -33.70 -7.94 -41.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000924252568.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.811 kcal (2) G-P(sol) polarization free energy of solvation -33.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds