Wall clock time and date at job start Mon Mar 30 2020 07:05:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99576 * 2 1 4 4 H 1.48494 * 109.47228 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.46793 * 119.99882 * 3 2 1 6 6 H 1.48500 * 109.47000 * 239.99975 * 3 2 1 7 7 C 1.37871 * 120.00147 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00147 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00083 * 0.02562 * 7 2 1 10 10 O 1.42905 * 109.46835 * 180.02562 * 9 7 2 11 11 C 1.42903 * 113.99594 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.46972 * 179.97438 * 11 10 9 13 13 O 1.45210 * 109.47335 * 64.99954 * 12 11 10 14 14 C 1.34228 * 117.00077 * 180.02562 * 13 12 11 15 15 O 1.20820 * 119.99960 * 359.97438 * 14 13 12 16 16 C 1.50703 * 119.99712 * 179.97438 * 14 13 12 17 17 C 1.53002 * 109.46863 * 179.97438 * 16 14 13 18 18 H 1.09006 * 109.63817 * 55.42270 * 17 16 14 19 19 C 1.53022 * 109.64594 * 295.00303 * 17 16 14 20 20 C 1.50062 * 110.14746 * 190.88162 * 19 17 16 21 21 C 1.29443 * 124.07663 * 17.12551 * 20 19 17 22 22 C 1.50066 * 124.07445 * 359.55624 * 21 20 19 23 23 C 1.53007 * 110.15595 * 17.09487 * 22 21 20 24 24 H 0.97005 * 119.99661 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.46850 * 299.99881 * 9 7 2 26 26 H 1.08998 * 109.47115 * 59.99805 * 9 7 2 27 27 H 1.09005 * 109.46851 * 299.99626 * 11 10 9 28 28 H 1.08995 * 109.47252 * 60.00069 * 11 10 9 29 29 H 1.09000 * 109.47310 * 184.99675 * 12 11 10 30 30 H 1.08994 * 109.47524 * 304.99888 * 12 11 10 31 31 H 1.08997 * 109.47319 * 299.99534 * 16 14 13 32 32 H 1.09003 * 109.46683 * 60.00110 * 16 14 13 33 33 H 1.09001 * 109.35683 * 311.08549 * 19 17 16 34 34 H 1.09003 * 109.35924 * 70.80277 * 19 17 16 35 35 H 1.08006 * 117.96448 * 197.15011 * 20 19 17 36 36 H 1.08001 * 117.96148 * 179.53207 * 21 20 19 37 37 H 1.09003 * 109.35597 * 137.31325 * 22 21 20 38 38 H 1.08998 * 109.35717 * 257.03251 * 22 21 20 39 39 H 1.08999 * 109.64889 * 190.90010 * 23 22 21 40 40 H 1.09002 * 109.62657 * 70.26923 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1027 1.6965 1.2125 6 1 3.1028 1.6965 -1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 8 2.1798 -3.5852 0.0017 11 6 1.5653 -4.8754 0.0013 12 6 2.6483 -5.9561 0.0020 13 8 3.3987 -5.8885 1.2433 14 6 4.3934 -6.7755 1.4031 15 8 4.6289 -7.5820 0.5348 16 6 5.2163 -6.7654 2.6656 17 6 6.2739 -7.8687 2.5937 18 1 6.8734 -7.7434 1.6920 19 6 5.5892 -9.2370 2.5702 20 6 6.6031 -10.3258 2.7665 21 6 7.7923 -10.1327 3.2397 22 6 8.3267 -8.7915 3.6492 23 6 7.1766 -7.7991 3.8320 24 1 -0.4850 -0.8401 -0.0004 25 1 0.6241 -2.5566 0.8903 26 1 0.6248 -2.5571 -0.8896 27 1 0.9442 -4.9823 0.8906 28 1 0.9462 -4.9826 -0.8894 29 1 2.1824 -6.9374 -0.0879 30 1 3.3224 -5.7955 -0.8393 31 1 5.7068 -5.7979 2.7718 32 1 4.5673 -6.9401 3.5237 33 1 4.8490 -9.2844 3.3688 34 1 5.0935 -9.3765 1.6094 35 1 6.3232 -11.3332 2.4957 36 1 8.4401 -10.9902 3.3468 37 1 8.8710 -8.8909 4.5884 38 1 9.0018 -8.4207 2.8779 39 1 7.5761 -6.7905 3.9379 40 1 6.6019 -8.0641 4.7196 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000924252568.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:03 Heat of formation + Delta-G solvation = -165.733333 kcal Electronic energy + Delta-G solvation = -19891.550162 eV Core-core repulsion = 16669.941083 eV Total energy + Delta-G solvation = -3221.609078 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.69519 -39.60084 -38.82589 -37.42820 -35.26533 -33.92636 -31.74536 -31.61345 -28.90992 -28.28536 -24.81015 -24.43983 -23.80796 -22.72009 -21.36848 -19.25041 -19.04598 -18.67280 -18.02463 -17.45698 -16.98643 -16.89990 -16.50289 -15.73947 -15.45124 -15.25523 -14.87817 -14.59339 -14.23750 -14.02698 -13.87626 -13.54171 -13.46672 -13.27427 -13.01192 -12.96022 -12.56704 -12.55430 -12.25057 -11.90008 -11.85644 -11.75440 -11.60936 -11.15388 -11.04909 -10.90530 -10.86189 -10.40978 -9.84596 -8.84562 -6.55843 1.16057 1.42547 1.53377 1.62071 1.66621 1.83472 2.48480 2.90279 3.02464 3.54005 3.67015 3.77526 3.84181 4.00753 4.01860 4.20378 4.30729 4.32877 4.39172 4.45610 4.49424 4.51115 4.59826 4.66267 4.72140 4.75977 4.86828 4.90451 5.00863 5.07761 5.17962 5.33173 5.44066 5.48899 5.63838 5.78664 5.89673 6.08487 6.31282 6.58576 6.71493 7.24489 8.56912 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.030783 B = 0.002996 C = 0.002788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.365906 B = 9344.397557 C =10039.216956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.028 4.028 3 Si 1.128 2.872 4 H -0.275 1.275 5 H -0.266 1.266 6 H -0.268 1.268 7 C -0.627 4.627 8 H 0.052 0.948 9 C 0.195 3.805 10 O -0.403 6.403 11 C 0.051 3.949 12 C 0.078 3.922 13 O -0.363 6.363 14 C 0.457 3.543 15 O -0.534 6.534 16 C -0.107 4.107 17 C -0.072 4.072 18 H 0.064 0.936 19 C -0.095 4.095 20 C -0.166 4.166 21 C -0.162 4.162 22 C -0.093 4.093 23 C -0.112 4.112 24 H 0.257 0.743 25 H -0.013 1.013 26 H -0.012 1.012 27 H 0.058 0.942 28 H 0.081 0.919 29 H 0.109 0.891 30 H 0.068 0.932 31 H 0.121 0.879 32 H 0.127 0.873 33 H 0.078 0.922 34 H 0.065 0.935 35 H 0.104 0.896 36 H 0.112 0.888 37 H 0.088 0.912 38 H 0.074 0.926 39 H 0.081 0.919 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.407 -18.991 8.574 24.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.225 4.225 3 Si 0.946 3.054 4 H -0.200 1.200 5 H -0.191 1.191 6 H -0.193 1.193 7 C -0.664 4.664 8 H 0.071 0.929 9 C 0.120 3.880 10 O -0.323 6.323 11 C -0.026 4.026 12 C 0.005 3.995 13 O -0.280 6.280 14 C 0.302 3.698 15 O -0.425 6.425 16 C -0.145 4.145 17 C -0.091 4.091 18 H 0.083 0.917 19 C -0.131 4.131 20 C -0.184 4.184 21 C -0.180 4.180 22 C -0.130 4.130 23 C -0.149 4.149 24 H 0.066 0.934 25 H 0.004 0.996 26 H 0.006 0.994 27 H 0.076 0.924 28 H 0.099 0.901 29 H 0.127 0.873 30 H 0.087 0.913 31 H 0.139 0.861 32 H 0.145 0.855 33 H 0.096 0.904 34 H 0.083 0.917 35 H 0.122 0.878 36 H 0.130 0.870 37 H 0.107 0.893 38 H 0.092 0.908 39 H 0.100 0.900 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 13.442 -17.584 8.292 23.636 hybrid contribution -0.648 -2.132 -0.545 2.294 sum 12.794 -19.716 7.748 24.747 Atomic orbital electron populations 1.70931 1.07695 1.29902 1.47815 1.27609 0.96477 1.06547 0.91909 0.82825 0.74072 0.70167 0.78300 1.20037 1.19104 1.19302 1.22270 0.95414 0.92116 1.56610 0.92927 1.20014 0.89237 0.85549 0.93238 1.87888 1.35038 1.14100 1.95258 1.22705 0.94760 0.83247 1.01851 1.23114 0.93111 0.98928 0.84355 1.86608 1.44531 1.55431 1.41398 1.24522 0.78419 0.76813 0.90067 1.90601 1.68275 1.38753 1.44826 1.21676 0.97055 1.03200 0.92519 1.21027 0.95354 0.92917 0.99805 0.91747 1.20625 0.97471 0.92862 1.02178 1.22126 0.96059 0.99253 1.00944 1.22262 0.96703 0.98994 0.99994 1.20502 0.97815 0.92392 1.02271 1.21664 0.96328 1.00373 0.96574 0.93418 0.99564 0.99403 0.92363 0.90062 0.87339 0.91327 0.86088 0.85502 0.90387 0.91664 0.87811 0.87025 0.89314 0.90803 0.90004 0.90574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.07 13.65 21.45 0.29 -56.77 16 2 C -0.03 -1.63 5.46 84.65 0.46 -1.16 16 3 Si 1.13 50.19 29.90 68.60 2.05 52.24 16 4 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 5 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 6 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 7 C -0.63 -37.92 9.43 25.60 0.24 -37.68 16 8 H 0.05 3.19 7.81 -2.91 -0.02 3.17 16 9 C 0.19 10.85 5.00 71.24 0.36 11.21 16 10 O -0.40 -20.00 10.30 -145.57 -1.50 -21.50 16 11 C 0.05 1.85 6.33 71.98 0.46 2.31 16 12 C 0.08 2.46 5.85 71.98 0.42 2.88 16 13 O -0.36 -11.88 10.19 -48.75 -0.50 -12.38 16 14 C 0.46 12.77 7.71 71.24 0.55 13.32 16 15 O -0.53 -16.92 13.79 21.98 0.30 -16.62 16 16 C -0.11 -2.05 5.29 29.85 0.16 -1.90 16 17 C -0.07 -1.32 1.88 -10.65 -0.02 -1.34 16 18 H 0.06 1.41 7.96 -2.38 -0.02 1.40 16 19 C -0.09 -1.82 5.03 29.66 0.15 -1.67 16 20 C -0.17 -2.90 9.80 27.04 0.27 -2.63 16 21 C -0.16 -2.44 9.80 27.04 0.27 -2.17 16 22 C -0.09 -1.19 6.12 29.65 0.18 -1.01 16 23 C -0.11 -1.48 5.31 30.73 0.16 -1.32 16 24 H 0.26 15.86 7.22 -92.70 -0.67 15.19 16 25 H -0.01 -0.75 8.01 -2.39 -0.02 -0.77 16 26 H -0.01 -0.65 8.01 -2.39 -0.02 -0.67 16 27 H 0.06 2.02 8.14 -2.38 -0.02 2.00 16 28 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 29 H 0.11 2.72 8.13 -2.39 -0.02 2.70 16 30 H 0.07 2.25 8.13 -2.39 -0.02 2.23 16 31 H 0.12 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.13 1.89 8.11 -2.39 -0.02 1.87 16 33 H 0.08 1.33 8.08 -2.39 -0.02 1.31 16 34 H 0.06 1.57 6.23 -2.39 -0.01 1.55 16 35 H 0.10 1.67 8.06 -2.91 -0.02 1.65 16 36 H 0.11 1.39 8.06 -2.91 -0.02 1.37 16 37 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.08 0.91 8.14 -2.39 -0.02 0.90 16 40 H 0.08 0.90 8.12 -2.39 -0.02 0.88 16 Total: -1.00 -72.31 332.95 5.39 -66.91 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: 1.10 Total: 9.29 kcal Atomic # 6 Polarization: -24.82 SS G_CDS: 3.65 Total: -21.18 kcal Atomic # 7 Polarization: -57.07 SS G_CDS: 0.29 Total: -56.77 kcal Atomic # 8 Polarization: -48.80 SS G_CDS: -1.69 Total: -50.50 kcal Atomic # 14 Polarization: 50.19 SS G_CDS: 2.05 Total: 52.24 kcal Total: -72.31 5.39 -66.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000924252568.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.819 kcal (2) G-P(sol) polarization free energy of solvation -72.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds