Wall clock time and date at job start Mon Mar 30 2020 07:05:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86795 * 120.00144 * 2 1 4 4 H 1.48501 * 109.46838 * 269.99807 * 3 2 1 5 5 H 1.48500 * 109.47264 * 29.99558 * 3 2 1 6 6 H 1.48494 * 109.47250 * 149.99797 * 3 2 1 7 7 C 1.37883 * 119.99517 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.98869 * 180.02562 * 7 2 1 9 9 C 1.50689 * 120.00080 * 0.02562 * 7 2 1 10 10 O 1.42901 * 109.46843 * 179.97438 * 9 7 2 11 11 C 1.42905 * 114.00172 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.47403 * 180.02562 * 11 10 9 13 13 O 1.45205 * 109.47038 * 64.99891 * 12 11 10 14 14 C 1.34225 * 116.99943 * 179.97438 * 13 12 11 15 15 O 1.20825 * 120.00047 * 0.02562 * 14 13 12 16 16 C 1.50698 * 119.99990 * 179.97438 * 14 13 12 17 17 C 1.53006 * 109.47184 * 179.97438 * 16 14 13 18 18 H 1.09003 * 109.64071 * 304.58648 * 17 16 14 19 19 C 1.53030 * 109.63956 * 65.00249 * 17 16 14 20 20 C 1.50062 * 110.14621 * 169.12029 * 19 17 16 21 21 C 1.29447 * 124.07710 * 342.86933 * 20 19 17 22 22 C 1.50067 * 124.07358 * 0.44851 * 21 20 19 23 23 C 1.53015 * 110.15666 * 342.90289 * 22 21 20 24 24 H 0.97004 * 119.99780 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.47298 * 60.00228 * 9 7 2 26 26 H 1.08998 * 109.47697 * 299.99760 * 9 7 2 27 27 H 1.09002 * 109.47203 * 59.99941 * 11 10 9 28 28 H 1.09005 * 109.46993 * 300.00405 * 11 10 9 29 29 H 1.09004 * 109.46731 * 305.00119 * 12 11 10 30 30 H 1.08993 * 109.47109 * 184.99979 * 12 11 10 31 31 H 1.09001 * 109.46665 * 60.00348 * 16 14 13 32 32 H 1.08993 * 109.47304 * 299.99904 * 16 14 13 33 33 H 1.08997 * 109.35928 * 289.32853 * 19 17 16 34 34 H 1.09001 * 109.35602 * 48.91159 * 19 17 16 35 35 H 1.07996 * 117.96227 * 162.89145 * 20 19 17 36 36 H 1.08000 * 117.96727 * 180.46901 * 21 20 19 37 37 H 1.08998 * 109.36218 * 103.09510 * 22 21 20 38 38 H 1.09005 * 109.35905 * 222.81849 * 22 21 20 39 39 H 1.08997 * 109.62644 * 289.72680 * 23 22 21 40 40 H 1.09001 * 109.65010 * 169.09840 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1942 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 8 2.1796 -3.5853 0.0005 11 6 1.5650 -4.8754 0.0000 12 6 2.6479 -5.9563 0.0006 13 8 3.3983 -5.8888 1.2420 14 6 4.3922 -6.7765 1.4022 15 8 4.6277 -7.5830 0.5339 16 6 5.2150 -6.7666 2.6647 17 6 6.2717 -7.8709 2.5934 18 1 5.7879 -8.8295 2.4063 19 6 7.2602 -7.5649 1.4660 20 6 8.4424 -8.4852 1.5511 21 6 8.7531 -9.1713 2.6039 22 6 7.9691 -9.1495 3.8833 23 6 7.0469 -7.9289 3.9158 24 1 -0.4850 0.8401 0.0004 25 1 0.6247 -2.5571 -0.8897 26 1 0.6240 -2.5567 0.8903 27 1 0.9452 -4.9822 -0.8903 28 1 0.9445 -4.9827 0.8897 29 1 3.3221 -5.7956 -0.8407 30 1 2.1820 -6.9375 -0.0894 31 1 4.5658 -6.9404 3.5228 32 1 5.7063 -5.7995 2.7706 33 1 6.7650 -7.7008 0.5045 34 1 7.5990 -6.5325 1.5528 35 1 9.0734 -8.5809 0.6799 36 1 9.6315 -9.7981 2.5590 37 1 7.3695 -10.0569 3.9552 38 1 8.6568 -9.1030 4.7278 39 1 7.6422 -7.0232 4.0316 40 1 6.3474 -8.0200 4.7468 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000924252570.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:07 Heat of formation + Delta-G solvation = -143.157467 kcal Electronic energy + Delta-G solvation = -19895.165202 eV Core-core repulsion = 16674.535087 eV Total energy + Delta-G solvation = -3220.630115 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.51709 -38.71348 -37.01364 -35.97685 -33.10138 -32.76492 -30.95300 -30.20230 -27.80152 -26.83062 -23.56999 -22.73863 -22.31320 -21.59384 -20.35340 -18.22686 -17.52071 -16.59709 -16.51228 -16.17114 -16.04968 -15.41288 -14.69200 -14.60396 -14.30249 -13.92338 -13.80785 -13.21718 -13.15757 -12.70011 -12.63761 -12.37198 -12.29232 -11.91729 -11.77743 -11.41401 -10.98870 -10.92666 -10.85346 -10.82566 -10.75927 -10.36255 -10.34383 -10.15821 -10.01492 -9.13790 -9.12752 -8.88177 -8.21997 -6.12761 -4.14453 2.13665 2.32681 2.82985 3.29717 3.34658 3.40208 4.31941 4.38762 4.47223 4.59541 4.72916 4.86013 4.94355 5.10002 5.15786 5.23824 5.24330 5.28297 5.37206 5.45335 5.47142 5.54339 5.58131 5.63759 5.76550 5.87192 5.93466 5.96278 6.02625 6.12612 6.19161 6.48560 6.66379 6.81377 7.04769 7.39054 7.77269 7.90880 8.11821 8.51876 8.98181 9.50330 10.98820 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.026566 B = 0.003087 C = 0.002902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.744141 B = 9068.488157 C = 9645.197817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.056 3.944 3 Si 0.909 3.091 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.515 4.515 8 H 0.067 0.933 9 C 0.194 3.806 10 O -0.391 6.391 11 C 0.061 3.939 12 C 0.074 3.926 13 O -0.342 6.342 14 C 0.460 3.540 15 O -0.516 6.516 16 C -0.112 4.112 17 C -0.075 4.075 18 H 0.082 0.918 19 C -0.098 4.098 20 C -0.143 4.143 21 C -0.168 4.168 22 C -0.088 4.088 23 C -0.116 4.116 24 H 0.264 0.736 25 H 0.006 0.994 26 H 0.007 0.993 27 H 0.062 0.938 28 H 0.049 0.951 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.106 0.894 32 H 0.108 0.892 33 H 0.090 0.910 34 H 0.072 0.928 35 H 0.101 0.899 36 H 0.099 0.901 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.395 -17.874 6.971 22.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.736 3.264 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.553 4.553 8 H 0.085 0.915 9 C 0.120 3.880 10 O -0.311 6.311 11 C -0.016 4.016 12 C 0.001 3.999 13 O -0.258 6.258 14 C 0.303 3.697 15 O -0.405 6.405 16 C -0.150 4.150 17 C -0.093 4.093 18 H 0.100 0.900 19 C -0.135 4.135 20 C -0.162 4.162 21 C -0.186 4.186 22 C -0.125 4.125 23 C -0.154 4.154 24 H 0.074 0.926 25 H 0.024 0.976 26 H 0.025 0.975 27 H 0.080 0.920 28 H 0.068 0.932 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.124 0.876 32 H 0.126 0.874 33 H 0.109 0.891 34 H 0.091 0.909 35 H 0.119 0.881 36 H 0.117 0.883 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.087 0.913 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 12.475 -17.935 6.689 22.848 hybrid contribution 0.012 0.781 -0.267 0.825 sum 12.487 -17.154 6.422 22.168 Atomic orbital electron populations 1.69966 1.06110 1.27203 1.50535 1.24957 0.94996 0.99469 0.95107 0.86318 0.79674 0.82161 0.78243 1.20459 1.21054 1.19584 1.21051 0.94103 0.89303 1.50860 0.91506 1.20235 0.88752 0.83506 0.95498 1.87916 1.35325 1.12621 1.95222 1.22324 0.93312 0.85489 1.00510 1.23188 0.93701 0.98663 0.84371 1.86609 1.43611 1.54184 1.41417 1.23715 0.79005 0.77845 0.89101 1.90606 1.67703 1.38346 1.43856 1.21511 0.96996 1.02483 0.94016 1.21049 0.94404 0.98316 0.95540 0.90003 1.20704 0.93938 0.98534 1.00314 1.22087 0.98135 0.98036 0.97892 1.22002 1.00300 1.00999 0.95325 1.20412 0.97700 0.98468 0.95950 1.21669 0.98291 0.98712 0.96680 0.92625 0.97631 0.97484 0.92012 0.93236 0.90563 0.90523 0.87593 0.87390 0.89120 0.90930 0.88130 0.88273 0.91008 0.91118 0.91316 0.91285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.85 13.29 55.43 0.74 -26.12 16 2 C 0.06 1.61 5.46 -17.81 -0.10 1.52 16 3 Si 0.91 21.83 29.54 -169.99 -5.02 16.81 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 6 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.51 -15.23 9.43 -34.44 -0.32 -15.56 16 8 H 0.07 1.97 7.81 -52.48 -0.41 1.56 16 9 C 0.19 5.33 5.69 36.00 0.20 5.54 16 10 O -0.39 -9.53 10.30 -38.79 -0.40 -9.93 16 11 C 0.06 1.13 6.33 37.16 0.24 1.36 16 12 C 0.07 1.19 5.84 37.16 0.22 1.41 16 13 O -0.34 -5.68 10.19 -42.01 -0.43 -6.11 16 14 C 0.46 6.55 7.71 36.00 0.28 6.82 16 15 O -0.52 -8.17 13.78 -18.75 -0.26 -8.43 16 16 C -0.11 -1.16 5.29 -27.88 -0.15 -1.30 16 17 C -0.07 -0.72 1.88 -90.40 -0.17 -0.89 16 18 H 0.08 0.87 7.96 -51.93 -0.41 0.46 16 19 C -0.10 -1.05 5.04 -28.18 -0.14 -1.19 16 20 C -0.14 -1.39 9.80 -35.90 -0.35 -1.74 16 21 C -0.17 -1.46 9.80 -35.90 -0.35 -1.81 16 22 C -0.09 -0.66 6.12 -28.18 -0.17 -0.83 16 23 C -0.12 -0.90 5.31 -26.52 -0.14 -1.04 16 24 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 25 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 26 H 0.01 0.21 8.14 -51.93 -0.42 -0.22 16 27 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 29 H 0.08 1.25 8.13 -51.93 -0.42 0.82 16 30 H 0.08 1.03 8.13 -51.93 -0.42 0.60 16 31 H 0.11 0.89 8.14 -51.93 -0.42 0.46 16 32 H 0.11 1.04 8.11 -51.93 -0.42 0.62 16 33 H 0.09 1.15 6.22 -51.93 -0.32 0.83 16 34 H 0.07 0.75 8.08 -51.93 -0.42 0.33 16 35 H 0.10 0.90 8.06 -52.49 -0.42 0.48 16 36 H 0.10 0.74 8.06 -52.49 -0.42 0.32 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.07 0.53 8.12 -51.93 -0.42 0.11 16 40 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 334.26 15.07 5.04 5.04 Total: -1.00 -32.64 334.26 -7.91 -40.56 By element: Atomic # 1 Polarization: 2.52 SS G_CDS: -6.62 Total: -4.10 kcal Atomic # 6 Polarization: -6.75 SS G_CDS: -0.96 Total: -7.72 kcal Atomic # 7 Polarization: -26.85 SS G_CDS: 0.74 Total: -26.12 kcal Atomic # 8 Polarization: -23.38 SS G_CDS: -1.09 Total: -24.47 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -32.64 -7.91 -40.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000924252570.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.600 kcal (2) G-P(sol) polarization free energy of solvation -32.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds