Wall clock time and date at job start Mon Mar 30 2020 07:05:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86795 * 120.00144 * 2 1 4 4 H 1.48501 * 109.46838 * 269.99807 * 3 2 1 5 5 H 1.48500 * 109.47264 * 29.99558 * 3 2 1 6 6 H 1.48494 * 109.47250 * 149.99797 * 3 2 1 7 7 C 1.37883 * 119.99517 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.98869 * 180.02562 * 7 2 1 9 9 C 1.50689 * 120.00080 * 0.02562 * 7 2 1 10 10 O 1.42901 * 109.46843 * 179.97438 * 9 7 2 11 11 C 1.42905 * 114.00172 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.47403 * 180.02562 * 11 10 9 13 13 O 1.45205 * 109.47038 * 64.99891 * 12 11 10 14 14 C 1.34225 * 116.99943 * 179.97438 * 13 12 11 15 15 O 1.20825 * 120.00047 * 0.02562 * 14 13 12 16 16 C 1.50698 * 119.99990 * 179.97438 * 14 13 12 17 17 C 1.53006 * 109.47184 * 179.97438 * 16 14 13 18 18 H 1.09003 * 109.64071 * 304.58648 * 17 16 14 19 19 C 1.53030 * 109.63956 * 65.00249 * 17 16 14 20 20 C 1.50062 * 110.14621 * 169.12029 * 19 17 16 21 21 C 1.29447 * 124.07710 * 342.86933 * 20 19 17 22 22 C 1.50067 * 124.07358 * 0.44851 * 21 20 19 23 23 C 1.53015 * 110.15666 * 342.90289 * 22 21 20 24 24 H 0.97004 * 119.99780 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.47298 * 60.00228 * 9 7 2 26 26 H 1.08998 * 109.47697 * 299.99760 * 9 7 2 27 27 H 1.09002 * 109.47203 * 59.99941 * 11 10 9 28 28 H 1.09005 * 109.46993 * 300.00405 * 11 10 9 29 29 H 1.09004 * 109.46731 * 305.00119 * 12 11 10 30 30 H 1.08993 * 109.47109 * 184.99979 * 12 11 10 31 31 H 1.09001 * 109.46665 * 60.00348 * 16 14 13 32 32 H 1.08993 * 109.47304 * 299.99904 * 16 14 13 33 33 H 1.08997 * 109.35928 * 289.32853 * 19 17 16 34 34 H 1.09001 * 109.35602 * 48.91159 * 19 17 16 35 35 H 1.07996 * 117.96227 * 162.89145 * 20 19 17 36 36 H 1.08000 * 117.96727 * 180.46901 * 21 20 19 37 37 H 1.08998 * 109.36218 * 103.09510 * 22 21 20 38 38 H 1.09005 * 109.35905 * 222.81849 * 22 21 20 39 39 H 1.08997 * 109.62644 * 289.72680 * 23 22 21 40 40 H 1.09001 * 109.65010 * 169.09840 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1942 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 8 2.1796 -3.5853 0.0005 11 6 1.5650 -4.8754 0.0000 12 6 2.6479 -5.9563 0.0006 13 8 3.3983 -5.8888 1.2420 14 6 4.3922 -6.7765 1.4022 15 8 4.6277 -7.5830 0.5339 16 6 5.2150 -6.7666 2.6647 17 6 6.2717 -7.8709 2.5934 18 1 5.7879 -8.8295 2.4063 19 6 7.2602 -7.5649 1.4660 20 6 8.4424 -8.4852 1.5511 21 6 8.7531 -9.1713 2.6039 22 6 7.9691 -9.1495 3.8833 23 6 7.0469 -7.9289 3.9158 24 1 -0.4850 0.8401 0.0004 25 1 0.6247 -2.5571 -0.8897 26 1 0.6240 -2.5567 0.8903 27 1 0.9452 -4.9822 -0.8903 28 1 0.9445 -4.9827 0.8897 29 1 3.3221 -5.7956 -0.8407 30 1 2.1820 -6.9375 -0.0894 31 1 4.5658 -6.9404 3.5228 32 1 5.7063 -5.7995 2.7706 33 1 6.7650 -7.7008 0.5045 34 1 7.5990 -6.5325 1.5528 35 1 9.0734 -8.5809 0.6799 36 1 9.6315 -9.7981 2.5590 37 1 7.3695 -10.0569 3.9552 38 1 8.6568 -9.1030 4.7278 39 1 7.6422 -7.0232 4.0316 40 1 6.3474 -8.0200 4.7468 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000924252570.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:07 Heat of formation + Delta-G solvation = -161.571469 kcal Electronic energy + Delta-G solvation = -19895.963693 eV Core-core repulsion = 16674.535087 eV Total energy + Delta-G solvation = -3221.428606 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.64425 -39.55937 -38.66595 -37.34849 -34.95340 -33.89926 -31.73516 -31.59851 -29.21195 -28.41778 -24.64551 -24.34421 -23.74079 -22.66973 -21.32747 -19.02723 -18.70746 -18.60073 -17.89175 -17.35645 -17.08780 -16.84702 -16.40453 -16.22177 -15.36812 -15.19625 -14.76871 -14.54829 -14.09762 -13.86811 -13.74265 -13.62533 -13.24799 -13.14283 -12.97582 -12.91409 -12.69340 -12.52356 -12.43771 -12.00650 -11.83632 -11.69512 -11.58337 -11.29012 -11.12319 -11.02646 -10.89341 -10.28238 -9.83658 -8.33044 -6.45362 1.20646 1.40512 1.43151 1.43385 1.55375 1.72531 2.34326 3.00927 3.05627 3.58448 3.70218 3.79657 3.93093 4.04949 4.09895 4.23044 4.35824 4.41841 4.47268 4.51424 4.53991 4.64778 4.69581 4.74725 4.78023 4.84434 4.92231 5.03205 5.10436 5.16474 5.19589 5.34769 5.47156 5.52921 5.54431 5.79595 5.94199 6.09665 6.48889 6.75233 6.79335 7.26302 8.79220 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.026566 B = 0.003087 C = 0.002902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.744141 B = 9068.488157 C = 9645.197817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.007 3.993 3 Si 0.983 3.017 4 H -0.268 1.268 5 H -0.273 1.273 6 H -0.265 1.265 7 C -0.551 4.551 8 H 0.060 0.940 9 C 0.208 3.792 10 O -0.409 6.409 11 C 0.053 3.947 12 C 0.078 3.922 13 O -0.362 6.362 14 C 0.456 3.544 15 O -0.535 6.535 16 C -0.108 4.108 17 C -0.070 4.070 18 H 0.071 0.929 19 C -0.098 4.098 20 C -0.167 4.167 21 C -0.160 4.160 22 C -0.092 4.092 23 C -0.112 4.112 24 H 0.271 0.729 25 H -0.009 1.009 26 H -0.010 1.010 27 H 0.080 0.920 28 H 0.057 0.943 29 H 0.068 0.932 30 H 0.107 0.893 31 H 0.131 0.869 32 H 0.117 0.883 33 H 0.063 0.937 34 H 0.070 0.930 35 H 0.101 0.899 36 H 0.112 0.888 37 H 0.078 0.922 38 H 0.088 0.912 39 H 0.070 0.930 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.421 -17.907 8.285 23.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.192 4.192 3 Si 0.806 3.194 4 H -0.193 1.193 5 H -0.198 1.198 6 H -0.189 1.189 7 C -0.588 4.588 8 H 0.078 0.922 9 C 0.133 3.867 10 O -0.329 6.329 11 C -0.023 4.023 12 C 0.005 3.995 13 O -0.279 6.279 14 C 0.301 3.699 15 O -0.426 6.426 16 C -0.145 4.145 17 C -0.089 4.089 18 H 0.090 0.910 19 C -0.135 4.135 20 C -0.185 4.185 21 C -0.178 4.178 22 C -0.129 4.129 23 C -0.150 4.150 24 H 0.080 0.920 25 H 0.009 0.991 26 H 0.008 0.992 27 H 0.098 0.902 28 H 0.075 0.925 29 H 0.087 0.913 30 H 0.125 0.875 31 H 0.149 0.851 32 H 0.135 0.865 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.119 0.881 36 H 0.130 0.870 37 H 0.097 0.903 38 H 0.106 0.894 39 H 0.089 0.911 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 13.502 -17.996 8.003 23.879 hybrid contribution -0.318 0.670 -0.682 1.008 sum 13.184 -17.326 7.321 22.970 Atomic orbital electron populations 1.70064 1.07702 1.28720 1.50381 1.25957 0.95991 1.03357 0.93850 0.85179 0.78394 0.76988 0.78836 1.19330 1.19786 1.18881 1.21388 0.94097 0.90920 1.52443 0.92156 1.19873 0.88569 0.84394 0.93872 1.87861 1.35550 1.14212 1.95325 1.22649 0.94569 0.83375 1.01756 1.23130 0.93142 0.98973 0.84275 1.86608 1.44502 1.55293 1.41455 1.24513 0.78401 0.76880 0.90065 1.90601 1.68040 1.39057 1.44868 1.21678 0.96930 1.03213 0.92677 1.21020 0.94029 0.97414 0.96401 0.91049 1.20639 0.94531 0.98828 0.99489 1.22099 0.98419 0.99232 0.98770 1.22277 1.00380 0.99764 0.95356 1.20507 0.97959 0.98591 0.95799 1.21672 0.98470 0.99013 0.95796 0.91966 0.99085 0.99213 0.90195 0.92512 0.91333 0.87528 0.85076 0.86502 0.91856 0.91150 0.88116 0.87000 0.90327 0.89351 0.91114 0.89444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.67 13.29 21.45 0.28 -55.39 16 2 C 0.01 0.41 5.46 84.66 0.46 0.87 16 3 Si 0.98 44.32 29.54 68.60 2.03 46.35 16 4 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 5 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 6 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 7 C -0.55 -33.06 9.43 25.60 0.24 -32.82 16 8 H 0.06 3.60 7.81 -2.91 -0.02 3.58 16 9 C 0.21 11.70 5.69 71.23 0.41 12.11 16 10 O -0.41 -20.31 10.30 -145.57 -1.50 -21.81 16 11 C 0.05 1.96 6.33 71.98 0.46 2.41 16 12 C 0.08 2.47 5.84 71.98 0.42 2.89 16 13 O -0.36 -11.90 10.19 -48.73 -0.50 -12.39 16 14 C 0.46 12.82 7.71 71.24 0.55 13.37 16 15 O -0.54 -17.05 13.78 21.97 0.30 -16.75 16 16 C -0.11 -2.07 5.29 29.85 0.16 -1.91 16 17 C -0.07 -1.28 1.88 -10.65 -0.02 -1.30 16 18 H 0.07 1.46 7.96 -2.39 -0.02 1.44 16 19 C -0.10 -2.10 5.04 29.66 0.15 -1.95 16 20 C -0.17 -3.18 9.80 27.03 0.27 -2.92 16 21 C -0.16 -2.50 9.80 27.03 0.27 -2.24 16 22 C -0.09 -1.14 6.12 29.65 0.18 -0.96 16 23 C -0.11 -1.46 5.31 30.73 0.16 -1.30 16 24 H 0.27 15.03 8.31 -92.71 -0.77 14.25 16 25 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 26 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 27 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 28 H 0.06 2.00 8.14 -2.38 -0.02 1.98 16 29 H 0.07 2.26 8.13 -2.39 -0.02 2.24 16 30 H 0.11 2.72 8.13 -2.39 -0.02 2.70 16 31 H 0.13 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.12 2.08 8.11 -2.39 -0.02 2.06 16 33 H 0.06 1.69 6.22 -2.39 -0.01 1.67 16 34 H 0.07 1.47 8.08 -2.39 -0.02 1.46 16 35 H 0.10 1.83 8.06 -2.91 -0.02 1.80 16 36 H 0.11 1.45 8.06 -2.91 -0.02 1.42 16 37 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.09 0.83 8.14 -2.38 -0.02 0.81 16 39 H 0.07 0.92 8.12 -2.39 -0.02 0.90 16 40 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -70.40 334.26 5.31 -65.10 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: 0.99 Total: 8.65 kcal Atomic # 6 Polarization: -17.44 SS G_CDS: 3.70 Total: -13.74 kcal Atomic # 7 Polarization: -55.67 SS G_CDS: 0.28 Total: -55.39 kcal Atomic # 8 Polarization: -49.27 SS G_CDS: -1.69 Total: -50.96 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -70.40 5.31 -65.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000924252570.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.476 kcal (2) G-P(sol) polarization free energy of solvation -70.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds