Wall clock time and date at job start Mon Mar 30 2020 07:07:16
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31514 * 1
3 3 Si 1.86803 * 120.00112 * 2 1
4 4 H 1.48494 * 109.47228 * 179.97438 * 3 2 1
5 5 H 1.48501 * 109.46793 * 299.99983 * 3 2 1
6 6 H 1.48500 * 109.47000 * 60.00075 * 3 2 1
7 7 C 1.37885 * 120.00035 * 179.97438 * 2 1 3
8 8 H 1.08004 * 119.99675 * 179.72276 * 7 2 1
9 9 C 1.50695 * 119.99721 * 0.02562 * 7 2 1
10 10 C 1.53004 * 109.46637 * 179.97438 * 9 7 2
11 11 O 1.45207 * 109.47015 * 179.97438 * 10 9 7
12 12 C 1.34224 * 117.00170 * 179.97438 * 11 10 9
13 13 O 1.20829 * 119.99742 * 0.02562 * 12 11 10
14 14 C 1.50695 * 120.00258 * 179.97438 * 12 11 10
15 15 C 1.52998 * 109.47456 * 179.97438 * 14 12 11
16 16 H 1.08991 * 110.55261 * 305.70512 * 15 14 12
17 17 C 1.54995 * 110.61839 * 182.82151 * 15 14 12
18 18 C 1.54989 * 102.01256 * 204.59840 * 17 15 14
19 19 C 1.54104 * 104.25205 * 20.66883 * 18 17 15
20 20 H 1.08993 * 109.87768 * 242.74364 * 19 18 17
21 21 C 1.52998 * 110.00347 * 121.66146 * 19 18 17
22 22 C 1.53006 * 117.49736 * 249.26432 * 21 19 18
23 23 C 1.52994 * 117.49849 * 180.64046 * 21 19 18
24 24 O 1.43746 * 107.29215 * 2.16526 * 19 18 17
25 25 H 0.97000 * 119.99706 * 359.97438 * 1 2 3
26 26 H 1.08992 * 109.47177 * 299.99952 * 9 7 2
27 27 H 1.08997 * 109.47039 * 60.00401 * 9 7 2
28 28 H 1.09000 * 109.47266 * 299.99671 * 10 9 7
29 29 H 1.08997 * 109.46955 * 60.00501 * 10 9 7
30 30 H 1.09003 * 109.47238 * 300.00790 * 14 12 11
31 31 H 1.09007 * 109.46883 * 60.00255 * 14 12 11
32 32 H 1.08997 * 110.91255 * 322.67544 * 17 15 14
33 33 H 1.09005 * 110.90679 * 86.28190 * 17 15 14
34 34 H 1.09005 * 110.33769 * 262.02823 * 18 17 15
35 35 H 1.08999 * 110.57503 * 139.42520 * 18 17 15
36 36 H 1.08999 * 115.55195 * 34.96402 * 21 19 18
37 37 H 1.09002 * 117.49742 * 359.97438 * 22 21 19
38 38 H 1.08996 * 117.49952 * 145.01833 * 22 21 19
39 39 H 1.09004 * 117.50070 * 214.97398 * 23 21 19
40 40 H 1.09002 * 117.49864 * 0.02562 * 23 21 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 3.7091 1.3464 0.0006
5 1 1.8904 2.3964 -1.2125
6 1 1.8904 2.3964 1.2125
7 6 2.0046 -1.1941 0.0005
8 1 3.0846 -1.1941 -0.0040
9 6 1.2510 -2.4991 0.0005
10 6 2.2454 -3.6621 0.0005
11 8 1.5193 -4.9196 0.0011
12 6 2.2504 -6.0453 0.0007
13 8 3.4570 -5.9820 0.0003
14 6 1.5663 -7.3880 0.0019
15 6 2.6200 -8.4973 0.0004
16 1 3.3141 -8.3646 -0.8294
17 6 1.9453 -9.8909 -0.0698
18 6 3.0233 -10.8038 0.5679
19 6 3.9022 -9.8382 1.3864
20 1 4.9189 -9.8392 0.9937
21 6 3.9124 -10.2590 2.8574
22 6 3.1965 -9.3490 3.8575
23 6 4.7253 -9.4038 3.8312
24 8 3.3297 -8.5259 1.2574
25 1 -0.4850 0.8401 0.0004
26 1 0.6241 -2.5567 0.8902
27 1 0.6248 -2.5571 -0.8897
28 1 2.8720 -3.6043 -0.8895
29 1 2.8719 -3.6043 0.8905
30 1 0.9444 -7.4782 0.8925
31 1 0.9425 -7.4788 -0.8875
32 1 1.0264 -9.9083 0.5162
33 1 1.7513 -10.1775 -1.1035
34 1 3.6132 -11.2922 -0.2077
35 1 2.5608 -11.5446 1.2202
36 1 3.8772 -11.3331 3.0393
37 1 2.7186 -8.4502 3.4676
38 1 2.6902 -9.8243 4.6976
39 1 5.2248 -9.9151 4.6541
40 1 5.2525 -8.5410 3.4240
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000924353113.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 07:07:16
Heat of formation + Delta-G solvation = -126.533094 kcal
Electronic energy + Delta-G solvation = -20269.206929 eV
Core-core repulsion = 17049.297700 eV
Total energy + Delta-G solvation = -3219.909228 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 268.151 amu
Computer time = 0.37 seconds
Orbital eigenvalues (eV)
-40.32360 -39.46938 -36.73257 -35.90371 -33.32337 -32.48058 -31.85256 -30.19150
-27.40842 -24.97017 -23.12029 -22.39848 -21.68508 -20.91846 -20.47202 -20.15994
-17.37128 -16.77952 -16.17594 -16.12084 -15.92903 -15.62463 -15.44880 -14.81615
-14.47222 -13.83698 -13.47721 -13.37120 -12.57486 -12.36180 -12.28349 -12.09634
-11.93243 -11.60890 -11.50869 -11.42071 -11.16408 -11.02562 -10.98322 -10.71936
-10.65030 -10.33566 -10.20848 -10.10602 -9.66103 -9.58438 -9.55591 -9.25141
-8.42676 -6.08606 -4.12582 2.69648 3.21788 3.28942 3.36493 3.42282
3.55070 3.69837 4.27615 4.39419 4.42855 4.65584 4.68337 4.85879
4.87919 4.98913 5.06431 5.18796 5.24943 5.28022 5.32507 5.50410
5.53021 5.57980 5.59544 5.67101 5.78143 5.84834 5.91224 6.04395
6.14612 6.17405 6.19303 6.68683 6.86187 7.09798 7.59778 7.65611
7.89787 8.23999 8.35037 8.93317 9.51713 11.03004
Molecular weight = 268.15amu
Principal moments of inertia in cm(-1)
A = 0.031583 B = 0.003232 C = 0.003071
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 886.350293 B = 8661.682566 C = 9114.354960
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.891 5.891
2 C 0.060 3.940
3 Si 0.899 3.101
4 H -0.271 1.271
5 H -0.282 1.282
6 H -0.282 1.282
7 C -0.525 4.525
8 H 0.060 0.940
9 C 0.024 3.976
10 C 0.076 3.924
11 O -0.361 6.361
12 C 0.454 3.546
13 O -0.509 6.509
14 C -0.111 4.111
15 C 0.090 3.910
16 H 0.079 0.921
17 C -0.149 4.149
18 C -0.147 4.147
19 C 0.104 3.896
20 H 0.071 0.929
21 C -0.163 4.163
22 C -0.165 4.165
23 C -0.176 4.176
24 O -0.353 6.353
25 H 0.262 0.738
26 H 0.028 0.972
27 H 0.027 0.973
28 H 0.057 0.943
29 H 0.058 0.942
30 H 0.111 0.889
31 H 0.116 0.884
32 H 0.081 0.919
33 H 0.082 0.918
34 H 0.074 0.926
35 H 0.079 0.921
36 H 0.110 0.890
37 H 0.106 0.894
38 H 0.088 0.912
39 H 0.090 0.910
40 H 0.097 0.903
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.797 -23.919 2.217 24.320
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.529 5.529
2 C -0.142 4.142
3 Si 0.727 3.273
4 H -0.196 1.196
5 H -0.208 1.208
6 H -0.208 1.208
7 C -0.563 4.563
8 H 0.078 0.922
9 C -0.013 4.013
10 C 0.004 3.996
11 O -0.277 6.277
12 C 0.296 3.704
13 O -0.397 6.397
14 C -0.148 4.148
15 C 0.032 3.968
16 H 0.097 0.903
17 C -0.187 4.187
18 C -0.185 4.185
19 C 0.046 3.954
20 H 0.088 0.912
21 C -0.181 4.181
22 C -0.202 4.202
23 C -0.213 4.213
24 O -0.272 6.272
25 H 0.072 0.928
26 H 0.046 0.954
27 H 0.046 0.954
28 H 0.075 0.925
29 H 0.076 0.924
30 H 0.129 0.871
31 H 0.134 0.866
32 H 0.100 0.900
33 H 0.101 0.899
34 H 0.093 0.907
35 H 0.098 0.902
36 H 0.128 0.872
37 H 0.125 0.875
38 H 0.107 0.893
39 H 0.109 0.891
40 H 0.116 0.884
Dipole moment (debyes) X Y Z Total
from point charges 4.028 -23.552 2.370 24.011
hybrid contribution 0.545 0.801 -0.116 0.976
sum 4.574 -22.751 2.255 23.315
Atomic orbital electron populations
1.69986 1.06088 1.26833 1.49991 1.24990 0.94918 0.99391 0.94907
0.86419 0.80082 0.83162 0.77681 1.19583 1.20846 1.20826 1.21037
0.93228 0.90158 1.51908 0.92219 1.19169 0.94206 0.89116 0.98813
1.23597 0.96295 0.78901 1.00840 1.86511 1.42516 1.15884 1.82830
1.23357 0.86690 0.87207 0.73130 1.90646 1.15687 1.88188 1.45197
1.21425 0.98516 0.88479 1.06392 1.22892 0.92472 0.93075 0.88323
0.90305 1.23199 0.99156 0.94324 1.02025 1.22976 0.97321 0.98577
0.99587 1.22145 0.96789 0.82986 0.93457 0.91159 1.22500 1.07425
0.97224 0.90916 1.22873 0.94856 1.02358 1.00070 1.22943 0.94591
1.02490 1.01316 1.88988 1.70259 1.30286 1.37707 0.92794 0.95359
0.95418 0.92462 0.92406 0.87125 0.86560 0.90040 0.89905 0.90679
0.90231 0.87181 0.87547 0.89304 0.89123 0.88448
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -26.66 13.29 55.43 0.74 -25.93 16
2 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16
3 Si 0.90 21.67 29.54 -169.99 -5.02 16.65 16
4 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16
5 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16
6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16
7 C -0.53 -15.06 9.11 -34.44 -0.31 -15.37 16
8 H 0.06 1.66 7.74 -52.48 -0.41 1.26 16
9 C 0.02 0.64 5.35 -27.88 -0.15 0.50 16
10 C 0.08 1.76 5.40 37.16 0.20 1.96 16
11 O -0.36 -7.43 10.22 -39.24 -0.40 -7.84 16
12 C 0.45 8.12 7.88 36.00 0.28 8.41 16
13 O -0.51 -10.52 15.36 -22.62 -0.35 -10.87 16
14 C -0.11 -1.34 5.58 -27.89 -0.16 -1.50 16
15 C 0.09 1.03 2.78 -25.68 -0.07 0.96 16
16 H 0.08 0.96 7.97 -51.93 -0.41 0.54 16
17 C -0.15 -1.17 6.60 -24.63 -0.16 -1.34 16
18 C -0.15 -1.12 6.65 -25.10 -0.17 -1.28 16
19 C 0.10 1.07 3.78 -26.16 -0.10 0.97 16
20 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16
21 C -0.16 -1.53 5.55 -90.62 -0.50 -2.03 16
22 C -0.16 -1.72 9.88 -26.73 -0.26 -1.98 16
23 C -0.18 -1.79 10.21 -26.73 -0.27 -2.07 16
24 O -0.35 -4.75 8.80 -43.43 -0.38 -5.13 16
25 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16
26 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16
27 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16
28 H 0.06 1.31 8.13 -51.93 -0.42 0.88 16
29 H 0.06 1.34 8.13 -51.93 -0.42 0.92 16
30 H 0.11 1.22 8.14 -51.93 -0.42 0.80 16
31 H 0.12 1.08 8.14 -51.92 -0.42 0.66 16
32 H 0.08 0.60 8.06 -51.93 -0.42 0.18 16
33 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16
34 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16
35 H 0.08 0.52 7.60 -51.93 -0.39 0.13 16
36 H 0.11 0.83 7.99 -51.93 -0.41 0.41 16
37 H 0.11 1.33 7.06 -51.93 -0.37 0.97 16
38 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16
39 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16
40 H 0.10 1.15 8.14 -51.93 -0.42 0.72 16
LS Contribution 335.18 15.07 5.05 5.05
Total: -1.00 -32.71 335.18 -8.76 -41.47
By element:
Atomic # 1 Polarization: 4.36 SS G_CDS: -6.62 Total: -2.26 kcal
Atomic # 6 Polarization: -9.38 SS G_CDS: -1.77 Total: -11.15 kcal
Atomic # 7 Polarization: -26.66 SS G_CDS: 0.74 Total: -25.93 kcal
Atomic # 8 Polarization: -22.70 SS G_CDS: -1.13 Total: -23.83 kcal
Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal
Total LS contribution 5.05 Total: 5.05 kcal
Total: -32.71 -8.76 -41.47 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000924353113.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -85.062 kcal
(2) G-P(sol) polarization free energy of solvation -32.714 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.776 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.757 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.471 kcal
(6) G-S(sol) free energy of system = (1) + (5) -126.533 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.37 seconds