Wall clock time and date at job start Mon Mar 30 2020 07:07:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00112 * 2 1 4 4 H 1.48494 * 109.47228 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46793 * 299.99983 * 3 2 1 6 6 H 1.48500 * 109.47000 * 60.00075 * 3 2 1 7 7 C 1.37885 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99675 * 179.72276 * 7 2 1 9 9 C 1.50695 * 119.99721 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46637 * 179.97438 * 9 7 2 11 11 O 1.45207 * 109.47015 * 179.97438 * 10 9 7 12 12 C 1.34224 * 117.00170 * 179.97438 * 11 10 9 13 13 O 1.20829 * 119.99742 * 0.02562 * 12 11 10 14 14 C 1.50695 * 120.00258 * 179.97438 * 12 11 10 15 15 C 1.52998 * 109.47456 * 179.97438 * 14 12 11 16 16 H 1.08991 * 110.55261 * 305.70512 * 15 14 12 17 17 C 1.54995 * 110.61839 * 182.82151 * 15 14 12 18 18 C 1.54989 * 102.01256 * 204.59840 * 17 15 14 19 19 C 1.54104 * 104.25205 * 20.66883 * 18 17 15 20 20 H 1.08993 * 109.87768 * 242.74364 * 19 18 17 21 21 C 1.52998 * 110.00347 * 121.66146 * 19 18 17 22 22 C 1.53006 * 117.49736 * 249.26432 * 21 19 18 23 23 C 1.52994 * 117.49849 * 180.64046 * 21 19 18 24 24 O 1.43746 * 107.29215 * 2.16526 * 19 18 17 25 25 H 0.97000 * 119.99706 * 359.97438 * 1 2 3 26 26 H 1.08992 * 109.47177 * 299.99952 * 9 7 2 27 27 H 1.08997 * 109.47039 * 60.00401 * 9 7 2 28 28 H 1.09000 * 109.47266 * 299.99671 * 10 9 7 29 29 H 1.08997 * 109.46955 * 60.00501 * 10 9 7 30 30 H 1.09003 * 109.47238 * 300.00790 * 14 12 11 31 31 H 1.09007 * 109.46883 * 60.00255 * 14 12 11 32 32 H 1.08997 * 110.91255 * 322.67544 * 17 15 14 33 33 H 1.09005 * 110.90679 * 86.28190 * 17 15 14 34 34 H 1.09005 * 110.33769 * 262.02823 * 18 17 15 35 35 H 1.08999 * 110.57503 * 139.42520 * 18 17 15 36 36 H 1.08999 * 115.55195 * 34.96402 * 21 19 18 37 37 H 1.09002 * 117.49742 * 359.97438 * 22 21 19 38 38 H 1.08996 * 117.49952 * 145.01833 * 22 21 19 39 39 H 1.09004 * 117.50070 * 214.97398 * 23 21 19 40 40 H 1.09002 * 117.49864 * 0.02562 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 -0.0040 9 6 1.2510 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 8 1.5193 -4.9196 0.0011 12 6 2.2504 -6.0453 0.0007 13 8 3.4570 -5.9820 0.0003 14 6 1.5663 -7.3880 0.0019 15 6 2.6200 -8.4973 0.0004 16 1 3.3141 -8.3646 -0.8294 17 6 1.9453 -9.8909 -0.0698 18 6 3.0233 -10.8038 0.5679 19 6 3.9022 -9.8382 1.3864 20 1 4.9189 -9.8392 0.9937 21 6 3.9124 -10.2590 2.8574 22 6 3.1965 -9.3490 3.8575 23 6 4.7253 -9.4038 3.8312 24 8 3.3297 -8.5259 1.2574 25 1 -0.4850 0.8401 0.0004 26 1 0.6241 -2.5567 0.8902 27 1 0.6248 -2.5571 -0.8897 28 1 2.8720 -3.6043 -0.8895 29 1 2.8719 -3.6043 0.8905 30 1 0.9444 -7.4782 0.8925 31 1 0.9425 -7.4788 -0.8875 32 1 1.0264 -9.9083 0.5162 33 1 1.7513 -10.1775 -1.1035 34 1 3.6132 -11.2922 -0.2077 35 1 2.5608 -11.5446 1.2202 36 1 3.8772 -11.3331 3.0393 37 1 2.7186 -8.4502 3.4676 38 1 2.6902 -9.8243 4.6976 39 1 5.2248 -9.9151 4.6541 40 1 5.2525 -8.5410 3.4240 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000924353113.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:16 Heat of formation + Delta-G solvation = -126.533094 kcal Electronic energy + Delta-G solvation = -20269.206929 eV Core-core repulsion = 17049.297700 eV Total energy + Delta-G solvation = -3219.909228 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.32360 -39.46938 -36.73257 -35.90371 -33.32337 -32.48058 -31.85256 -30.19150 -27.40842 -24.97017 -23.12029 -22.39848 -21.68508 -20.91846 -20.47202 -20.15994 -17.37128 -16.77952 -16.17594 -16.12084 -15.92903 -15.62463 -15.44880 -14.81615 -14.47222 -13.83698 -13.47721 -13.37120 -12.57486 -12.36180 -12.28349 -12.09634 -11.93243 -11.60890 -11.50869 -11.42071 -11.16408 -11.02562 -10.98322 -10.71936 -10.65030 -10.33566 -10.20848 -10.10602 -9.66103 -9.58438 -9.55591 -9.25141 -8.42676 -6.08606 -4.12582 2.69648 3.21788 3.28942 3.36493 3.42282 3.55070 3.69837 4.27615 4.39419 4.42855 4.65584 4.68337 4.85879 4.87919 4.98913 5.06431 5.18796 5.24943 5.28022 5.32507 5.50410 5.53021 5.57980 5.59544 5.67101 5.78143 5.84834 5.91224 6.04395 6.14612 6.17405 6.19303 6.68683 6.86187 7.09798 7.59778 7.65611 7.89787 8.23999 8.35037 8.93317 9.51713 11.03004 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.031583 B = 0.003232 C = 0.003071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.350293 B = 8661.682566 C = 9114.354960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.060 3.940 3 Si 0.899 3.101 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.525 4.525 8 H 0.060 0.940 9 C 0.024 3.976 10 C 0.076 3.924 11 O -0.361 6.361 12 C 0.454 3.546 13 O -0.509 6.509 14 C -0.111 4.111 15 C 0.090 3.910 16 H 0.079 0.921 17 C -0.149 4.149 18 C -0.147 4.147 19 C 0.104 3.896 20 H 0.071 0.929 21 C -0.163 4.163 22 C -0.165 4.165 23 C -0.176 4.176 24 O -0.353 6.353 25 H 0.262 0.738 26 H 0.028 0.972 27 H 0.027 0.973 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.111 0.889 31 H 0.116 0.884 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.110 0.890 37 H 0.106 0.894 38 H 0.088 0.912 39 H 0.090 0.910 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.797 -23.919 2.217 24.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.142 4.142 3 Si 0.727 3.273 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.563 4.563 8 H 0.078 0.922 9 C -0.013 4.013 10 C 0.004 3.996 11 O -0.277 6.277 12 C 0.296 3.704 13 O -0.397 6.397 14 C -0.148 4.148 15 C 0.032 3.968 16 H 0.097 0.903 17 C -0.187 4.187 18 C -0.185 4.185 19 C 0.046 3.954 20 H 0.088 0.912 21 C -0.181 4.181 22 C -0.202 4.202 23 C -0.213 4.213 24 O -0.272 6.272 25 H 0.072 0.928 26 H 0.046 0.954 27 H 0.046 0.954 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.129 0.871 31 H 0.134 0.866 32 H 0.100 0.900 33 H 0.101 0.899 34 H 0.093 0.907 35 H 0.098 0.902 36 H 0.128 0.872 37 H 0.125 0.875 38 H 0.107 0.893 39 H 0.109 0.891 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 4.028 -23.552 2.370 24.011 hybrid contribution 0.545 0.801 -0.116 0.976 sum 4.574 -22.751 2.255 23.315 Atomic orbital electron populations 1.69986 1.06088 1.26833 1.49991 1.24990 0.94918 0.99391 0.94907 0.86419 0.80082 0.83162 0.77681 1.19583 1.20846 1.20826 1.21037 0.93228 0.90158 1.51908 0.92219 1.19169 0.94206 0.89116 0.98813 1.23597 0.96295 0.78901 1.00840 1.86511 1.42516 1.15884 1.82830 1.23357 0.86690 0.87207 0.73130 1.90646 1.15687 1.88188 1.45197 1.21425 0.98516 0.88479 1.06392 1.22892 0.92472 0.93075 0.88323 0.90305 1.23199 0.99156 0.94324 1.02025 1.22976 0.97321 0.98577 0.99587 1.22145 0.96789 0.82986 0.93457 0.91159 1.22500 1.07425 0.97224 0.90916 1.22873 0.94856 1.02358 1.00070 1.22943 0.94591 1.02490 1.01316 1.88988 1.70259 1.30286 1.37707 0.92794 0.95359 0.95418 0.92462 0.92406 0.87125 0.86560 0.90040 0.89905 0.90679 0.90231 0.87181 0.87547 0.89304 0.89123 0.88448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.66 13.29 55.43 0.74 -25.93 16 2 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 3 Si 0.90 21.67 29.54 -169.99 -5.02 16.65 16 4 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.53 -15.06 9.11 -34.44 -0.31 -15.37 16 8 H 0.06 1.66 7.74 -52.48 -0.41 1.26 16 9 C 0.02 0.64 5.35 -27.88 -0.15 0.50 16 10 C 0.08 1.76 5.40 37.16 0.20 1.96 16 11 O -0.36 -7.43 10.22 -39.24 -0.40 -7.84 16 12 C 0.45 8.12 7.88 36.00 0.28 8.41 16 13 O -0.51 -10.52 15.36 -22.62 -0.35 -10.87 16 14 C -0.11 -1.34 5.58 -27.89 -0.16 -1.50 16 15 C 0.09 1.03 2.78 -25.68 -0.07 0.96 16 16 H 0.08 0.96 7.97 -51.93 -0.41 0.54 16 17 C -0.15 -1.17 6.60 -24.63 -0.16 -1.34 16 18 C -0.15 -1.12 6.65 -25.10 -0.17 -1.28 16 19 C 0.10 1.07 3.78 -26.16 -0.10 0.97 16 20 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 21 C -0.16 -1.53 5.55 -90.62 -0.50 -2.03 16 22 C -0.16 -1.72 9.88 -26.73 -0.26 -1.98 16 23 C -0.18 -1.79 10.21 -26.73 -0.27 -2.07 16 24 O -0.35 -4.75 8.80 -43.43 -0.38 -5.13 16 25 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 26 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.06 1.31 8.13 -51.93 -0.42 0.88 16 29 H 0.06 1.34 8.13 -51.93 -0.42 0.92 16 30 H 0.11 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.12 1.08 8.14 -51.92 -0.42 0.66 16 32 H 0.08 0.60 8.06 -51.93 -0.42 0.18 16 33 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.08 0.52 7.60 -51.93 -0.39 0.13 16 36 H 0.11 0.83 7.99 -51.93 -0.41 0.41 16 37 H 0.11 1.33 7.06 -51.93 -0.37 0.97 16 38 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.10 1.15 8.14 -51.93 -0.42 0.72 16 LS Contribution 335.18 15.07 5.05 5.05 Total: -1.00 -32.71 335.18 -8.76 -41.47 By element: Atomic # 1 Polarization: 4.36 SS G_CDS: -6.62 Total: -2.26 kcal Atomic # 6 Polarization: -9.38 SS G_CDS: -1.77 Total: -11.15 kcal Atomic # 7 Polarization: -26.66 SS G_CDS: 0.74 Total: -25.93 kcal Atomic # 8 Polarization: -22.70 SS G_CDS: -1.13 Total: -23.83 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.71 -8.76 -41.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000924353113.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.062 kcal (2) G-P(sol) polarization free energy of solvation -32.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds