Wall clock time and date at job start Mon Mar 30 2020 07:07:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00112 * 2 1 4 4 H 1.48494 * 109.47228 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46793 * 299.99983 * 3 2 1 6 6 H 1.48500 * 109.47000 * 60.00075 * 3 2 1 7 7 C 1.37885 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99675 * 179.72276 * 7 2 1 9 9 C 1.50695 * 119.99721 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46637 * 179.97438 * 9 7 2 11 11 O 1.45207 * 109.47015 * 179.97438 * 10 9 7 12 12 C 1.34224 * 117.00170 * 179.97438 * 11 10 9 13 13 O 1.20829 * 119.99742 * 0.02562 * 12 11 10 14 14 C 1.50695 * 120.00258 * 179.97438 * 12 11 10 15 15 C 1.52998 * 109.47456 * 179.97438 * 14 12 11 16 16 H 1.08991 * 110.55261 * 305.70512 * 15 14 12 17 17 C 1.54995 * 110.61839 * 182.82151 * 15 14 12 18 18 C 1.54989 * 102.01256 * 204.59840 * 17 15 14 19 19 C 1.54104 * 104.25205 * 20.66883 * 18 17 15 20 20 H 1.08993 * 109.87768 * 242.74364 * 19 18 17 21 21 C 1.52998 * 110.00347 * 121.66146 * 19 18 17 22 22 C 1.53006 * 117.49736 * 249.26432 * 21 19 18 23 23 C 1.52994 * 117.49849 * 180.64046 * 21 19 18 24 24 O 1.43746 * 107.29215 * 2.16526 * 19 18 17 25 25 H 0.97000 * 119.99706 * 359.97438 * 1 2 3 26 26 H 1.08992 * 109.47177 * 299.99952 * 9 7 2 27 27 H 1.08997 * 109.47039 * 60.00401 * 9 7 2 28 28 H 1.09000 * 109.47266 * 299.99671 * 10 9 7 29 29 H 1.08997 * 109.46955 * 60.00501 * 10 9 7 30 30 H 1.09003 * 109.47238 * 300.00790 * 14 12 11 31 31 H 1.09007 * 109.46883 * 60.00255 * 14 12 11 32 32 H 1.08997 * 110.91255 * 322.67544 * 17 15 14 33 33 H 1.09005 * 110.90679 * 86.28190 * 17 15 14 34 34 H 1.09005 * 110.33769 * 262.02823 * 18 17 15 35 35 H 1.08999 * 110.57503 * 139.42520 * 18 17 15 36 36 H 1.08999 * 115.55195 * 34.96402 * 21 19 18 37 37 H 1.09002 * 117.49742 * 359.97438 * 22 21 19 38 38 H 1.08996 * 117.49952 * 145.01833 * 22 21 19 39 39 H 1.09004 * 117.50070 * 214.97398 * 23 21 19 40 40 H 1.09002 * 117.49864 * 0.02562 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 -0.0040 9 6 1.2510 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 8 1.5193 -4.9196 0.0011 12 6 2.2504 -6.0453 0.0007 13 8 3.4570 -5.9820 0.0003 14 6 1.5663 -7.3880 0.0019 15 6 2.6200 -8.4973 0.0004 16 1 3.3141 -8.3646 -0.8294 17 6 1.9453 -9.8909 -0.0698 18 6 3.0233 -10.8038 0.5679 19 6 3.9022 -9.8382 1.3864 20 1 4.9189 -9.8392 0.9937 21 6 3.9124 -10.2590 2.8574 22 6 3.1965 -9.3490 3.8575 23 6 4.7253 -9.4038 3.8312 24 8 3.3297 -8.5259 1.2574 25 1 -0.4850 0.8401 0.0004 26 1 0.6241 -2.5567 0.8902 27 1 0.6248 -2.5571 -0.8897 28 1 2.8720 -3.6043 -0.8895 29 1 2.8719 -3.6043 0.8905 30 1 0.9444 -7.4782 0.8925 31 1 0.9425 -7.4788 -0.8875 32 1 1.0264 -9.9083 0.5162 33 1 1.7513 -10.1775 -1.1035 34 1 3.6132 -11.2922 -0.2077 35 1 2.5608 -11.5446 1.2202 36 1 3.8772 -11.3331 3.0393 37 1 2.7186 -8.4502 3.4676 38 1 2.6902 -9.8243 4.6976 39 1 5.2248 -9.9151 4.6541 40 1 5.2525 -8.5410 3.4240 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000924353113.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:15 Heat of formation + Delta-G solvation = -144.811439 kcal Electronic energy + Delta-G solvation = -20269.999537 eV Core-core repulsion = 17049.297700 eV Total energy + Delta-G solvation = -3220.701837 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.57017 -40.59512 -37.85352 -37.25241 -35.46435 -33.40844 -32.78934 -32.13852 -28.42109 -26.91282 -24.18132 -23.24374 -22.95299 -22.34675 -21.50570 -21.23284 -18.98850 -18.18855 -17.86081 -17.45409 -17.05157 -16.72580 -16.49041 -16.43785 -15.69874 -15.06984 -14.61176 -14.51581 -14.37038 -13.96113 -13.42875 -13.06750 -13.01987 -12.84113 -12.63090 -12.59950 -12.59311 -12.39529 -12.28726 -12.23779 -11.86196 -11.65690 -11.51155 -11.48577 -11.26706 -11.09686 -10.97215 -10.63534 -10.50729 -8.28933 -6.42296 1.24730 1.39641 1.40517 1.54059 1.79100 2.39115 2.75189 2.92362 3.05198 3.54982 3.64338 3.75156 3.93107 3.98484 4.07334 4.12591 4.18728 4.23281 4.27799 4.38314 4.44892 4.58499 4.62565 4.68982 4.75395 4.80503 4.94454 5.00037 5.03721 5.16001 5.24004 5.26251 5.27840 5.35047 5.44312 5.57300 5.74184 6.04846 6.07440 6.70255 6.79509 7.27508 8.83955 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.031583 B = 0.003232 C = 0.003071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.350293 B = 8661.682566 C = 9114.354960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.007 3.993 3 Si 0.975 3.025 4 H -0.264 1.264 5 H -0.273 1.273 6 H -0.274 1.274 7 C -0.552 4.552 8 H 0.062 0.938 9 C 0.032 3.968 10 C 0.091 3.909 11 O -0.369 6.369 12 C 0.448 3.552 13 O -0.540 6.540 14 C -0.101 4.101 15 C 0.082 3.918 16 H 0.065 0.935 17 C -0.138 4.138 18 C -0.140 4.140 19 C 0.092 3.908 20 H 0.061 0.939 21 C -0.150 4.150 22 C -0.171 4.171 23 C -0.187 4.187 24 O -0.387 6.387 25 H 0.269 0.731 26 H 0.006 0.994 27 H 0.009 0.991 28 H 0.058 0.942 29 H 0.052 0.948 30 H 0.126 0.874 31 H 0.152 0.848 32 H 0.091 0.909 33 H 0.105 0.895 34 H 0.089 0.911 35 H 0.096 0.904 36 H 0.138 0.862 37 H 0.079 0.921 38 H 0.107 0.893 39 H 0.110 0.890 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.730 -25.557 2.048 25.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.193 4.193 3 Si 0.798 3.202 4 H -0.188 1.188 5 H -0.198 1.198 6 H -0.199 1.199 7 C -0.590 4.590 8 H 0.081 0.919 9 C -0.006 4.006 10 C 0.018 3.982 11 O -0.285 6.285 12 C 0.293 3.707 13 O -0.430 6.430 14 C -0.138 4.138 15 C 0.025 3.975 16 H 0.083 0.917 17 C -0.175 4.175 18 C -0.177 4.177 19 C 0.034 3.966 20 H 0.078 0.922 21 C -0.168 4.168 22 C -0.208 4.208 23 C -0.224 4.224 24 O -0.307 6.307 25 H 0.077 0.923 26 H 0.024 0.976 27 H 0.027 0.973 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.144 0.856 31 H 0.169 0.831 32 H 0.110 0.890 33 H 0.124 0.876 34 H 0.107 0.893 35 H 0.115 0.885 36 H 0.156 0.844 37 H 0.097 0.903 38 H 0.125 0.875 39 H 0.128 0.872 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.960 -25.217 2.198 25.620 hybrid contribution 0.575 1.265 -0.053 1.390 sum 4.535 -23.952 2.145 24.472 Atomic orbital electron populations 1.70097 1.07775 1.28270 1.50339 1.25972 0.95881 1.03410 0.93993 0.85258 0.78797 0.77993 0.78141 1.18803 1.19825 1.19939 1.21404 0.93624 0.91355 1.52595 0.91945 1.18975 0.94289 0.90582 0.96714 1.23092 0.95041 0.79512 1.00535 1.86514 1.42733 1.15905 1.83395 1.24599 0.86644 0.87941 0.71494 1.90631 1.17277 1.88485 1.46627 1.21667 0.98852 0.84602 1.08665 1.23023 0.92297 0.94868 0.87337 0.91689 1.23184 0.99148 0.91461 1.03722 1.22976 0.96868 0.98081 0.99787 1.22358 0.96923 0.82737 0.94570 0.92159 1.22651 1.05680 0.98320 0.90100 1.22826 0.94786 1.01989 1.01205 1.22952 0.94509 1.02369 1.02565 1.88974 1.70855 1.32328 1.38545 0.92255 0.97569 0.97310 0.92405 0.92959 0.85623 0.83057 0.89016 0.87619 0.89262 0.88497 0.84414 0.90256 0.87454 0.87202 0.91070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.09 13.29 21.45 0.28 -55.80 16 2 C 0.01 0.37 5.46 84.66 0.46 0.84 16 3 Si 0.97 44.40 29.54 68.60 2.03 46.43 16 4 H -0.26 -11.61 7.11 99.48 0.71 -10.91 16 5 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 6 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 7 C -0.55 -32.23 9.11 25.60 0.23 -32.00 16 8 H 0.06 3.52 7.74 -2.91 -0.02 3.50 16 9 C 0.03 1.75 5.35 29.85 0.16 1.91 16 10 C 0.09 4.36 5.40 71.98 0.39 4.75 16 11 O -0.37 -15.45 10.22 -51.36 -0.52 -15.97 16 12 C 0.45 16.16 7.88 71.23 0.56 16.72 16 13 O -0.54 -22.92 15.36 25.66 0.39 -22.52 16 14 C -0.10 -2.30 5.58 29.85 0.17 -2.14 16 15 C 0.08 1.77 2.78 31.28 0.09 1.86 16 16 H 0.07 1.55 7.97 -2.39 -0.02 1.53 16 17 C -0.14 -1.72 6.60 31.96 0.21 -1.51 16 18 C -0.14 -1.70 6.65 31.65 0.21 -1.49 16 19 C 0.09 1.78 3.78 30.97 0.12 1.90 16 20 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 21 C -0.15 -2.58 5.55 -10.79 -0.06 -2.64 16 22 C -0.17 -3.46 9.88 30.60 0.30 -3.16 16 23 C -0.19 -3.77 10.21 30.59 0.31 -3.45 16 24 O -0.39 -10.39 8.80 -141.14 -1.24 -11.63 16 25 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 26 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 27 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 28 H 0.06 2.71 8.13 -2.39 -0.02 2.69 16 29 H 0.05 2.51 8.13 -2.39 -0.02 2.49 16 30 H 0.13 2.55 8.14 -2.39 -0.02 2.53 16 31 H 0.15 2.39 8.14 -2.38 -0.02 2.37 16 32 H 0.09 1.00 8.06 -2.39 -0.02 0.98 16 33 H 0.11 0.88 8.14 -2.38 -0.02 0.86 16 34 H 0.09 0.85 8.14 -2.38 -0.02 0.83 16 35 H 0.10 0.88 7.60 -2.39 -0.02 0.86 16 36 H 0.14 1.61 7.99 -2.39 -0.02 1.59 16 37 H 0.08 2.05 7.06 -2.39 -0.02 2.03 16 38 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -72.72 335.18 5.09 -67.63 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: 1.00 Total: 10.28 kcal Atomic # 6 Polarization: -21.56 SS G_CDS: 3.15 Total: -18.41 kcal Atomic # 7 Polarization: -56.09 SS G_CDS: 0.28 Total: -55.80 kcal Atomic # 8 Polarization: -48.75 SS G_CDS: -1.37 Total: -50.13 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -72.72 5.09 -67.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000924353113.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.184 kcal (2) G-P(sol) polarization free energy of solvation -72.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds