Wall clock time and date at job start Mon Mar 30 2020 07:07:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48493 * 109.47326 * 90.00391 * 3 2 1 5 5 H 1.48506 * 109.46545 * 210.00141 * 3 2 1 6 6 H 1.48498 * 109.47210 * 329.99852 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99398 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.46931 * 180.02562 * 9 7 2 11 11 O 1.45196 * 109.47127 * 179.97438 * 10 9 7 12 12 C 1.34232 * 116.99872 * 179.97438 * 11 10 9 13 13 O 1.20825 * 120.00049 * 0.02562 * 12 11 10 14 14 C 1.50695 * 119.99727 * 180.02562 * 12 11 10 15 15 C 1.53009 * 109.47097 * 180.02562 * 14 12 11 16 16 H 1.08997 * 109.81802 * 305.56456 * 15 14 12 17 17 C 1.54381 * 109.83126 * 184.58772 * 15 14 12 18 18 C 1.55311 * 102.24907 * 219.13034 * 17 15 14 19 19 C 1.54943 * 100.94338 * 34.13506 * 18 17 15 20 20 H 1.08993 * 110.31052 * 82.46906 * 19 18 17 21 21 C 1.53004 * 110.39094 * 204.59784 * 19 18 17 22 22 C 1.52996 * 117.49945 * 245.95877 * 21 19 18 23 23 C 1.52996 * 117.49737 * 177.29992 * 21 19 18 24 24 O 1.43233 * 109.82932 * 66.45148 * 15 14 12 25 25 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.46830 * 299.99601 * 9 7 2 27 27 H 1.08993 * 109.47221 * 59.99458 * 9 7 2 28 28 H 1.09004 * 109.46733 * 299.99896 * 10 9 7 29 29 H 1.09004 * 109.47253 * 59.99496 * 10 9 7 30 30 H 1.09003 * 109.47178 * 299.99681 * 14 12 11 31 31 H 1.09001 * 109.47646 * 60.00176 * 14 12 11 32 32 H 1.09006 * 110.84572 * 337.31647 * 17 15 14 33 33 H 1.08997 * 110.84963 * 100.93703 * 17 15 14 34 34 H 1.09003 * 111.12037 * 276.21096 * 18 17 15 35 35 H 1.08997 * 111.15869 * 152.07033 * 18 17 15 36 36 H 1.08995 * 115.54887 * 31.63136 * 21 19 18 37 37 H 1.09001 * 117.49515 * 0.02562 * 22 21 19 38 38 H 1.08997 * 117.49741 * 145.01633 * 22 21 19 39 39 H 1.09006 * 117.49811 * 214.98050 * 23 21 19 40 40 H 1.09002 * 117.50253 * 359.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 1.4000 5 1 3.5467 1.4400 -0.7001 6 1 1.4466 2.6526 -0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0214 -2.6367 -0.0014 11 8 5.4734 -2.6368 -0.0014 12 6 6.0827 -3.8328 -0.0021 13 8 5.4246 -4.8461 -0.0030 14 6 7.5876 -3.9117 -0.0016 15 6 8.0214 -5.3790 -0.0031 16 1 7.5539 -5.9035 0.8302 17 6 9.5580 -5.4710 0.1135 18 6 9.8921 -6.6427 -0.8496 19 6 8.8137 -6.4407 -1.9437 20 1 9.1362 -5.6828 -2.6575 21 6 8.5307 -7.7608 -2.6635 22 6 8.9142 -7.8558 -4.1416 23 6 7.4409 -7.7604 -3.7374 24 8 7.6434 -5.9961 -1.2392 25 1 -0.4850 0.8401 0.0004 26 1 3.8751 -0.6798 -0.8895 27 1 3.8745 -0.6809 0.8904 28 1 3.6577 -3.1515 0.8880 29 1 3.6583 -3.1496 -0.8920 30 1 7.9777 -3.4170 -0.8911 31 1 7.9771 -3.4183 0.8889 32 1 10.0285 -4.5468 -0.2221 33 1 9.8559 -5.7108 1.1342 34 1 9.7724 -7.6056 -0.3530 35 1 10.8953 -6.5385 -1.2629 36 1 8.6390 -8.6597 -2.0567 37 1 9.3685 -6.9780 -4.6011 38 1 9.2745 -8.8174 -4.5072 39 1 6.8324 -8.6593 -3.8373 40 1 6.9252 -6.8198 -3.9308 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000924353117.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:19 Heat of formation + Delta-G solvation = -123.367961 kcal Electronic energy + Delta-G solvation = -20175.602650 eV Core-core repulsion = 16955.830672 eV Total energy + Delta-G solvation = -3219.771978 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.37875 -39.46964 -37.00599 -36.00618 -33.28495 -32.56084 -31.81763 -30.64509 -27.47857 -25.10125 -23.03927 -22.60467 -21.70484 -20.91197 -20.54313 -19.99108 -17.43965 -17.12907 -16.74456 -16.33914 -15.94999 -15.72224 -14.99425 -14.75709 -14.19003 -13.98874 -13.70994 -13.30955 -12.92575 -12.58745 -12.36446 -12.18016 -11.95725 -11.73541 -11.58824 -11.52466 -11.36017 -11.22497 -11.13229 -10.65111 -10.52479 -10.47287 -10.25748 -9.92864 -9.80759 -9.64048 -9.62531 -9.31618 -8.60247 -6.10760 -4.11605 2.66051 3.14498 3.28974 3.29346 3.36386 3.41207 3.93870 4.16368 4.25126 4.40483 4.45846 4.68563 4.77464 4.83638 4.90027 5.00526 5.10493 5.14857 5.22801 5.28636 5.38352 5.41020 5.43629 5.52459 5.57287 5.72745 5.75297 5.89797 5.94286 6.03452 6.03834 6.05668 6.50945 6.88120 6.98155 7.24716 7.28082 7.65471 8.27481 8.42667 8.91426 9.48953 11.01946 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.030062 B = 0.003304 C = 0.003136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.187089 B = 8472.636355 C = 8927.755764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.071 3.929 3 Si 0.882 3.118 4 H -0.275 1.275 5 H -0.263 1.263 6 H -0.286 1.286 7 C -0.527 4.527 8 H 0.075 0.925 9 C -0.009 4.009 10 C 0.083 3.917 11 O -0.367 6.367 12 C 0.455 3.545 13 O -0.502 6.502 14 C -0.127 4.127 15 C 0.093 3.907 16 H 0.090 0.910 17 C -0.152 4.152 18 C -0.146 4.146 19 C 0.104 3.896 20 H 0.069 0.931 21 C -0.156 4.156 22 C -0.177 4.177 23 C -0.164 4.164 24 O -0.352 6.352 25 H 0.266 0.734 26 H 0.027 0.973 27 H 0.023 0.977 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.105 0.895 31 H 0.112 0.888 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.107 0.893 37 H 0.094 0.906 38 H 0.095 0.905 39 H 0.094 0.906 40 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.208 -12.893 -3.066 27.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.131 4.131 3 Si 0.709 3.291 4 H -0.201 1.201 5 H -0.188 1.188 6 H -0.212 1.212 7 C -0.565 4.565 8 H 0.093 0.907 9 C -0.047 4.047 10 C 0.011 3.989 11 O -0.284 6.284 12 C 0.297 3.703 13 O -0.389 6.389 14 C -0.165 4.165 15 C 0.035 3.965 16 H 0.107 0.893 17 C -0.189 4.189 18 C -0.184 4.184 19 C 0.047 3.953 20 H 0.087 0.913 21 C -0.174 4.174 22 C -0.214 4.214 23 C -0.201 4.201 24 O -0.271 6.271 25 H 0.075 0.925 26 H 0.045 0.955 27 H 0.041 0.959 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.123 0.877 31 H 0.130 0.870 32 H 0.100 0.900 33 H 0.104 0.896 34 H 0.098 0.902 35 H 0.101 0.899 36 H 0.125 0.875 37 H 0.112 0.888 38 H 0.114 0.886 39 H 0.113 0.887 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 23.581 -13.078 -3.141 27.147 hybrid contribution 0.342 0.881 0.113 0.951 sum 23.923 -12.197 -3.028 27.023 Atomic orbital electron populations 1.69903 1.06286 1.27166 1.50249 1.24945 0.94771 0.99185 0.94170 0.86739 0.80426 0.83261 0.78704 1.20077 1.18769 1.21186 1.20867 0.88356 0.95038 1.52199 0.90654 1.19620 0.96968 0.90307 0.97775 1.23330 0.72546 1.01366 1.01692 1.86469 1.26156 1.32527 1.83202 1.23332 0.91583 0.82140 0.73274 1.90667 1.67145 1.36473 1.44661 1.21843 0.90028 0.98699 1.05920 1.22536 0.93835 0.91365 0.88800 0.89253 1.23199 0.94921 0.99540 1.01270 1.23268 0.99614 0.99217 0.96274 1.22514 0.85432 0.93670 0.93719 0.91299 1.22333 1.05821 0.98116 0.91115 1.22993 0.99028 1.03120 0.96231 1.22856 0.91280 1.03826 1.02172 1.88676 1.29000 1.77221 1.32184 0.92462 0.95450 0.95881 0.91855 0.91794 0.87658 0.86999 0.90030 0.89572 0.90154 0.89850 0.87519 0.88768 0.88633 0.88726 0.88274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.76 13.96 55.43 0.77 -26.99 16 2 C 0.07 2.09 5.47 -17.82 -0.10 2.00 16 3 Si 0.88 21.69 27.47 -169.99 -4.67 17.02 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.26 -6.24 6.54 56.52 0.37 -5.87 16 6 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 7 C -0.53 -15.30 9.66 -34.44 -0.33 -15.63 16 8 H 0.08 2.34 7.99 -52.49 -0.42 1.92 16 9 C -0.01 -0.23 4.42 -27.88 -0.12 -0.35 16 10 C 0.08 1.86 5.40 37.16 0.20 2.06 16 11 O -0.37 -7.23 10.22 -39.26 -0.40 -7.63 16 12 C 0.45 7.96 7.85 36.00 0.28 8.24 16 13 O -0.50 -10.33 15.24 -23.58 -0.36 -10.68 16 14 C -0.13 -1.49 5.38 -27.88 -0.15 -1.64 16 15 C 0.09 1.03 3.04 -26.00 -0.08 0.95 16 16 H 0.09 1.08 7.95 -51.93 -0.41 0.67 16 17 C -0.15 -1.09 6.54 -24.78 -0.16 -1.26 16 18 C -0.15 -1.05 6.57 -24.48 -0.16 -1.21 16 19 C 0.10 1.02 3.61 -25.70 -0.09 0.93 16 20 H 0.07 0.64 7.95 -51.93 -0.41 0.23 16 21 C -0.16 -1.45 5.48 -90.62 -0.50 -1.95 16 22 C -0.18 -1.39 10.19 -26.70 -0.27 -1.66 16 23 C -0.16 -1.65 10.20 -26.70 -0.27 -1.92 16 24 O -0.35 -4.77 10.00 -47.67 -0.48 -5.25 16 25 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 26 H 0.03 0.67 7.20 -51.93 -0.37 0.30 16 27 H 0.02 0.56 7.57 -51.93 -0.39 0.16 16 28 H 0.06 1.42 8.13 -51.93 -0.42 1.00 16 29 H 0.06 1.46 8.13 -51.93 -0.42 1.04 16 30 H 0.11 1.10 8.14 -51.93 -0.42 0.67 16 31 H 0.11 1.00 8.14 -51.93 -0.42 0.57 16 32 H 0.08 0.49 7.85 -51.93 -0.41 0.08 16 33 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.08 0.56 7.93 -51.93 -0.41 0.15 16 35 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.11 0.93 7.97 -51.93 -0.41 0.52 16 37 H 0.09 0.68 8.07 -51.93 -0.42 0.26 16 38 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.10 1.14 8.14 -51.93 -0.42 0.71 16 LS Contribution 333.53 15.07 5.03 5.03 Total: -1.00 -33.68 333.53 -8.50 -42.18 By element: Atomic # 1 Polarization: 4.40 SS G_CDS: -6.63 Total: -2.24 kcal Atomic # 6 Polarization: -9.68 SS G_CDS: -1.76 Total: -11.44 kcal Atomic # 7 Polarization: -27.76 SS G_CDS: 0.77 Total: -26.99 kcal Atomic # 8 Polarization: -22.32 SS G_CDS: -1.24 Total: -23.56 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.67 Total: 17.02 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -33.68 -8.50 -42.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000924353117.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.189 kcal (2) G-P(sol) polarization free energy of solvation -33.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds