Wall clock time and date at job start Mon Mar 30 2020 07:07:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48493 * 109.47326 * 90.00391 * 3 2 1 5 5 H 1.48506 * 109.46545 * 210.00141 * 3 2 1 6 6 H 1.48498 * 109.47210 * 329.99852 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99398 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.46931 * 180.02562 * 9 7 2 11 11 O 1.45196 * 109.47127 * 179.97438 * 10 9 7 12 12 C 1.34232 * 116.99872 * 179.97438 * 11 10 9 13 13 O 1.20825 * 120.00049 * 0.02562 * 12 11 10 14 14 C 1.50695 * 119.99727 * 180.02562 * 12 11 10 15 15 C 1.53009 * 109.47097 * 180.02562 * 14 12 11 16 16 H 1.08997 * 109.81802 * 305.56456 * 15 14 12 17 17 C 1.54381 * 109.83126 * 184.58772 * 15 14 12 18 18 C 1.55311 * 102.24907 * 219.13034 * 17 15 14 19 19 C 1.54943 * 100.94338 * 34.13506 * 18 17 15 20 20 H 1.08993 * 110.31052 * 82.46906 * 19 18 17 21 21 C 1.53004 * 110.39094 * 204.59784 * 19 18 17 22 22 C 1.52996 * 117.49945 * 245.95877 * 21 19 18 23 23 C 1.52996 * 117.49737 * 177.29992 * 21 19 18 24 24 O 1.43233 * 109.82932 * 66.45148 * 15 14 12 25 25 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.46830 * 299.99601 * 9 7 2 27 27 H 1.08993 * 109.47221 * 59.99458 * 9 7 2 28 28 H 1.09004 * 109.46733 * 299.99896 * 10 9 7 29 29 H 1.09004 * 109.47253 * 59.99496 * 10 9 7 30 30 H 1.09003 * 109.47178 * 299.99681 * 14 12 11 31 31 H 1.09001 * 109.47646 * 60.00176 * 14 12 11 32 32 H 1.09006 * 110.84572 * 337.31647 * 17 15 14 33 33 H 1.08997 * 110.84963 * 100.93703 * 17 15 14 34 34 H 1.09003 * 111.12037 * 276.21096 * 18 17 15 35 35 H 1.08997 * 111.15869 * 152.07033 * 18 17 15 36 36 H 1.08995 * 115.54887 * 31.63136 * 21 19 18 37 37 H 1.09001 * 117.49515 * 0.02562 * 22 21 19 38 38 H 1.08997 * 117.49741 * 145.01633 * 22 21 19 39 39 H 1.09006 * 117.49811 * 214.98050 * 23 21 19 40 40 H 1.09002 * 117.50253 * 359.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 1.4000 5 1 3.5467 1.4400 -0.7001 6 1 1.4466 2.6526 -0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0214 -2.6367 -0.0014 11 8 5.4734 -2.6368 -0.0014 12 6 6.0827 -3.8328 -0.0021 13 8 5.4246 -4.8461 -0.0030 14 6 7.5876 -3.9117 -0.0016 15 6 8.0214 -5.3790 -0.0031 16 1 7.5539 -5.9035 0.8302 17 6 9.5580 -5.4710 0.1135 18 6 9.8921 -6.6427 -0.8496 19 6 8.8137 -6.4407 -1.9437 20 1 9.1362 -5.6828 -2.6575 21 6 8.5307 -7.7608 -2.6635 22 6 8.9142 -7.8558 -4.1416 23 6 7.4409 -7.7604 -3.7374 24 8 7.6434 -5.9961 -1.2392 25 1 -0.4850 0.8401 0.0004 26 1 3.8751 -0.6798 -0.8895 27 1 3.8745 -0.6809 0.8904 28 1 3.6577 -3.1515 0.8880 29 1 3.6583 -3.1496 -0.8920 30 1 7.9777 -3.4170 -0.8911 31 1 7.9771 -3.4183 0.8889 32 1 10.0285 -4.5468 -0.2221 33 1 9.8559 -5.7108 1.1342 34 1 9.7724 -7.6056 -0.3530 35 1 10.8953 -6.5385 -1.2629 36 1 8.6390 -8.6597 -2.0567 37 1 9.3685 -6.9780 -4.6011 38 1 9.2745 -8.8174 -4.5072 39 1 6.8324 -8.6593 -3.8373 40 1 6.9252 -6.8198 -3.9308 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000924353117.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:18 Heat of formation + Delta-G solvation = -143.401493 kcal Electronic energy + Delta-G solvation = -20176.471369 eV Core-core repulsion = 16955.830672 eV Total energy + Delta-G solvation = -3220.640697 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.58461 -40.53401 -37.93395 -37.41646 -35.40729 -33.46282 -32.89284 -32.37543 -28.47638 -26.94767 -23.98935 -23.31327 -22.70888 -22.35790 -21.83237 -20.94586 -19.23529 -18.35126 -18.06017 -17.39710 -17.32816 -17.07288 -16.28873 -15.79436 -15.54849 -15.26270 -14.96950 -14.60639 -14.25623 -14.01959 -13.45815 -13.22376 -13.11942 -12.94118 -12.59143 -12.49712 -12.45669 -12.43572 -12.29222 -12.18101 -11.81990 -11.71793 -11.57189 -11.44477 -11.33902 -11.21399 -10.95243 -10.82783 -10.49109 -8.36046 -6.44825 1.26882 1.37170 1.39520 1.52471 1.77134 2.33662 2.54077 2.98585 3.21513 3.48466 3.57807 3.73944 3.79961 3.99624 4.08743 4.13759 4.15254 4.18955 4.26349 4.31454 4.41909 4.56430 4.59211 4.62424 4.75040 4.76753 4.94068 4.99370 5.00313 5.05459 5.10417 5.22431 5.23988 5.26617 5.34236 5.48972 5.61737 6.13866 6.22055 6.61079 6.80180 7.20364 8.80369 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.030062 B = 0.003304 C = 0.003136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.187089 B = 8472.636355 C = 8927.755764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.010 3.990 3 Si 0.958 3.042 4 H -0.261 1.261 5 H -0.244 1.244 6 H -0.279 1.279 7 C -0.546 4.546 8 H 0.032 0.968 9 C -0.002 4.002 10 C 0.094 3.906 11 O -0.365 6.365 12 C 0.448 3.552 13 O -0.540 6.540 14 C -0.116 4.116 15 C 0.084 3.916 16 H 0.070 0.930 17 C -0.139 4.139 18 C -0.139 4.139 19 C 0.094 3.906 20 H 0.073 0.927 21 C -0.163 4.163 22 C -0.152 4.152 23 C -0.191 4.191 24 O -0.392 6.392 25 H 0.271 0.729 26 H 0.035 0.965 27 H 0.037 0.963 28 H 0.054 0.946 29 H 0.049 0.951 30 H 0.125 0.875 31 H 0.149 0.851 32 H 0.102 0.898 33 H 0.105 0.895 34 H 0.079 0.921 35 H 0.108 0.892 36 H 0.111 0.889 37 H 0.103 0.897 38 H 0.113 0.887 39 H 0.094 0.906 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.195 -11.724 -2.928 30.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.187 4.187 3 Si 0.780 3.220 4 H -0.185 1.185 5 H -0.167 1.167 6 H -0.205 1.205 7 C -0.584 4.584 8 H 0.050 0.950 9 C -0.039 4.039 10 C 0.020 3.980 11 O -0.282 6.282 12 C 0.293 3.707 13 O -0.429 6.429 14 C -0.153 4.153 15 C 0.027 3.973 16 H 0.088 0.912 17 C -0.176 4.176 18 C -0.176 4.176 19 C 0.037 3.963 20 H 0.091 0.909 21 C -0.181 4.181 22 C -0.188 4.188 23 C -0.229 4.229 24 O -0.312 6.312 25 H 0.080 0.920 26 H 0.053 0.947 27 H 0.055 0.945 28 H 0.073 0.927 29 H 0.067 0.933 30 H 0.143 0.857 31 H 0.167 0.833 32 H 0.120 0.880 33 H 0.123 0.877 34 H 0.098 0.902 35 H 0.126 0.874 36 H 0.129 0.871 37 H 0.121 0.879 38 H 0.132 0.868 39 H 0.113 0.887 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 27.596 -11.929 -3.003 30.213 hybrid contribution -0.968 0.378 0.046 1.040 sum 26.628 -11.551 -2.956 29.176 Atomic orbital electron populations 1.70052 1.08410 1.28710 1.51307 1.26004 0.95719 1.03739 0.93284 0.85548 0.79464 0.77350 0.79661 1.18540 1.16731 1.20493 1.21135 0.90828 0.93771 1.52628 0.94990 1.19450 0.94095 0.91855 0.98495 1.22870 0.74721 0.99748 1.00622 1.86469 1.24042 1.34089 1.83620 1.24653 0.93841 0.80727 0.71517 1.90658 1.68432 1.37466 1.46353 1.22088 0.84877 0.99902 1.08469 1.22668 0.96678 0.90434 0.87566 0.91190 1.23193 0.91431 1.00508 1.02514 1.23265 0.99777 0.99301 0.95254 1.22741 0.85361 0.93699 0.94473 0.90929 1.22454 1.05356 0.98394 0.91885 1.23068 0.96501 1.04413 0.94863 1.22831 0.92717 1.02749 1.04560 1.88652 1.31544 1.77717 1.33264 0.91984 0.94694 0.94500 0.92746 0.93268 0.85681 0.83329 0.87979 0.87681 0.90208 0.87404 0.87142 0.87887 0.86833 0.88726 0.90558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.79 13.96 21.45 0.30 -59.49 16 2 C 0.01 0.62 5.47 84.66 0.46 1.08 16 3 Si 0.96 43.95 27.47 68.60 1.88 45.83 16 4 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 5 H -0.24 -10.38 6.54 99.48 0.65 -9.72 16 6 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 7 C -0.55 -32.58 9.66 25.60 0.25 -32.33 16 8 H 0.03 2.11 7.99 -2.91 -0.02 2.08 16 9 C 0.00 -0.08 4.42 29.85 0.13 0.06 16 10 C 0.09 4.28 5.40 71.98 0.39 4.67 16 11 O -0.37 -14.10 10.22 -51.44 -0.53 -14.63 16 12 C 0.45 15.47 7.85 71.23 0.56 16.03 16 13 O -0.54 -22.85 15.24 26.59 0.41 -22.44 16 14 C -0.12 -2.43 5.38 29.85 0.16 -2.27 16 15 C 0.08 1.75 3.04 31.07 0.09 1.84 16 16 H 0.07 1.67 7.95 -2.39 -0.02 1.66 16 17 C -0.14 -1.50 6.54 31.86 0.21 -1.29 16 18 C -0.14 -1.57 6.57 32.05 0.21 -1.36 16 19 C 0.09 1.71 3.61 31.26 0.11 1.82 16 20 H 0.07 1.22 7.95 -2.39 -0.02 1.21 16 21 C -0.16 -2.91 5.48 -10.79 -0.06 -2.97 16 22 C -0.15 -2.15 10.19 30.62 0.31 -1.83 16 23 C -0.19 -3.94 10.20 30.62 0.31 -3.63 16 24 O -0.39 -10.52 10.00 -137.09 -1.37 -11.89 16 25 H 0.27 15.80 8.31 -92.70 -0.77 15.03 16 26 H 0.03 1.67 7.20 -2.39 -0.02 1.65 16 27 H 0.04 1.72 7.57 -2.39 -0.02 1.70 16 28 H 0.05 2.54 8.13 -2.39 -0.02 2.52 16 29 H 0.05 2.35 8.13 -2.38 -0.02 2.33 16 30 H 0.13 2.19 8.14 -2.39 -0.02 2.17 16 31 H 0.15 2.03 8.14 -2.39 -0.02 2.02 16 32 H 0.10 0.72 7.85 -2.38 -0.02 0.70 16 33 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.08 0.92 7.93 -2.39 -0.02 0.90 16 35 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.11 1.84 7.97 -2.39 -0.02 1.82 16 37 H 0.10 1.28 8.07 -2.39 -0.02 1.26 16 38 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.09 1.86 8.14 -2.38 -0.02 1.84 16 40 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -76.30 333.53 4.78 -71.52 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: 0.95 Total: 11.29 kcal Atomic # 6 Polarization: -23.34 SS G_CDS: 3.14 Total: -20.19 kcal Atomic # 7 Polarization: -59.79 SS G_CDS: 0.30 Total: -59.49 kcal Atomic # 8 Polarization: -47.47 SS G_CDS: -1.49 Total: -48.96 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 1.88 Total: 45.83 kcal Total: -76.30 4.78 -71.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000924353117.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.881 kcal (2) G-P(sol) polarization free energy of solvation -76.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds