Wall clock time and date at job start Mon Mar 30 2020 07:37:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42900 * 113.99673 * 2 1 4 4 H 1.08999 * 110.02162 * 331.39234 * 3 2 1 5 5 C 1.54269 * 110.03146 * 92.83911 * 3 2 1 6 6 C 1.54882 * 104.19844 * 142.89416 * 5 3 2 7 7 C 1.54966 * 102.77656 * 322.07948 * 6 5 3 8 8 H 1.08999 * 110.47901 * 279.23557 * 7 6 5 9 9 C 1.50696 * 110.53088 * 156.56935 * 7 6 5 10 10 O 1.20825 * 120.00258 * 245.24450 * 9 7 6 11 11 O 1.34237 * 120.00236 * 65.24410 * 9 7 6 12 12 C 1.45196 * 116.99942 * 179.97438 * 11 9 7 13 13 C 1.53001 * 109.46633 * 180.02562 * 12 11 9 14 14 C 1.50697 * 115.55212 * 39.89404 * 13 12 11 15 15 H 1.08000 * 119.99877 * 264.97155 * 14 13 12 16 16 C 1.37875 * 120.00265 * 84.97318 * 14 13 12 17 17 N 1.31524 * 119.99731 * 358.48094 * 16 14 13 18 18 Si 1.86797 * 120.00189 * 178.49043 * 16 14 13 19 19 H 1.48496 * 109.47479 * 59.99665 * 18 16 14 20 20 H 1.48503 * 109.46924 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47112 * 299.99406 * 18 16 14 22 22 C 1.53008 * 117.49924 * 254.18293 * 13 12 11 23 23 C 1.53005 * 59.99967 * 252.51335 * 22 13 12 24 24 C 1.53880 * 110.03322 * 210.00016 * 3 2 1 25 25 H 1.08996 * 109.47318 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46812 * 299.99714 * 1 2 3 27 27 H 1.08995 * 109.47139 * 59.99738 * 1 2 3 28 28 H 1.09005 * 110.48111 * 261.57311 * 5 3 2 29 29 H 1.08999 * 110.48617 * 24.21002 * 5 3 2 30 30 H 1.08997 * 110.76067 * 80.37008 * 6 5 3 31 31 H 1.09011 * 110.75846 * 203.55765 * 6 5 3 32 32 H 1.09001 * 109.47620 * 299.99864 * 12 11 9 33 33 H 1.08998 * 109.47085 * 60.00276 * 12 11 9 34 34 H 0.96998 * 119.99654 * 179.97438 * 17 16 14 35 35 H 1.09002 * 117.49502 * 0.02562 * 22 13 12 36 36 H 1.08999 * 117.49788 * 145.01993 * 22 13 12 37 37 H 1.08998 * 117.49669 * 252.50827 * 23 22 13 38 38 H 1.08995 * 117.51582 * 107.48398 * 23 22 13 39 39 H 1.09003 * 110.02790 * 359.97438 * 24 3 2 40 40 H 1.08995 * 110.03274 * 121.38587 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3406 2.0121 -0.4904 5 6 2.2907 1.7590 1.4476 6 6 3.6252 2.5389 1.3495 7 6 4.4273 1.7161 0.3098 8 1 4.8830 0.8456 0.7818 9 6 5.4793 2.5737 -0.3451 10 8 5.4071 2.8227 -1.5252 11 8 6.4966 3.0610 0.3826 12 6 7.4731 3.8788 -0.3143 13 6 8.5490 4.3393 0.6713 14 6 8.9904 3.3098 1.6794 15 1 8.5386 3.2861 2.6601 16 6 9.9710 2.3984 1.3499 17 7 10.5001 2.4082 0.1458 18 14 10.5479 1.1494 2.6135 19 1 9.4010 0.3057 3.0351 20 1 11.6006 0.2898 2.0149 21 1 11.1007 1.8595 3.7948 22 6 8.5152 5.8011 1.1220 23 6 9.6028 5.3227 0.1581 24 6 3.3683 1.2779 -0.7228 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.4932 2.4110 1.8043 29 1 2.4007 0.8954 2.1034 30 1 3.4544 3.5534 0.9896 31 1 4.1361 2.5531 2.3124 32 1 7.9357 3.2941 -1.1095 33 1 6.9775 4.7491 -0.7445 34 1 11.1902 1.7672 -0.0859 35 1 7.7261 6.4345 0.7167 36 1 8.8120 6.0183 2.1481 37 1 10.6152 5.2253 0.5500 38 1 9.5298 5.6414 -0.8817 39 1 3.5843 0.2686 -1.0732 40 1 3.3578 1.9710 -1.5639 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118417566.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:37:48 Heat of formation + Delta-G solvation = -120.260374 kcal Electronic energy + Delta-G solvation = -20828.981786 eV Core-core repulsion = 17609.344563 eV Total energy + Delta-G solvation = -3219.637223 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.11418 -38.70765 -36.84571 -35.78495 -35.12138 -31.92067 -29.26089 -28.78592 -26.82642 -26.13551 -25.19619 -22.27592 -21.14734 -20.73437 -19.42474 -19.18894 -17.45681 -16.73000 -16.50448 -15.99181 -15.44155 -15.07565 -14.95611 -14.57068 -14.00946 -13.83285 -13.66668 -12.94441 -12.66207 -12.37338 -12.15982 -11.69130 -11.66350 -11.60299 -11.43417 -11.11581 -10.91954 -10.87892 -10.76563 -10.63571 -10.51790 -10.31177 -9.90759 -9.76345 -9.68962 -9.47358 -8.91336 -8.43431 -8.12659 -6.02665 -4.07703 2.81121 3.32537 3.37207 3.37479 3.40175 3.66248 4.41807 4.42395 4.50755 4.93249 5.04866 5.12446 5.19294 5.25232 5.28093 5.36229 5.39658 5.44477 5.50361 5.55644 5.70372 5.82382 5.92977 5.99935 6.04710 6.18515 6.20748 6.28536 6.33856 6.49571 6.68034 6.77674 7.02752 7.09187 7.19648 7.38327 7.51760 7.89469 8.35962 8.54430 8.92395 9.57478 11.06973 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.022604 B = 0.004664 C = 0.004256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.433287 B = 6001.567231 C = 6577.767493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.383 6.383 3 C 0.084 3.916 4 H 0.066 0.934 5 C -0.145 4.145 6 C -0.108 4.108 7 C -0.086 4.086 8 H 0.114 0.886 9 C 0.460 3.540 10 O -0.528 6.528 11 O -0.321 6.321 12 C 0.116 3.884 13 C 0.036 3.964 14 C -0.481 4.481 15 H 0.062 0.938 16 C 0.069 3.931 17 N -0.884 5.884 18 Si 0.892 3.108 19 H -0.275 1.275 20 H -0.288 1.288 21 H -0.277 1.277 22 C -0.210 4.210 23 C -0.145 4.145 24 C -0.114 4.114 25 H 0.083 0.917 26 H 0.040 0.960 27 H 0.040 0.960 28 H 0.069 0.931 29 H 0.082 0.918 30 H 0.072 0.928 31 H 0.087 0.913 32 H 0.068 0.932 33 H 0.039 0.961 34 H 0.261 0.739 35 H 0.065 0.935 36 H 0.081 0.919 37 H 0.088 0.912 38 H 0.064 0.936 39 H 0.084 0.916 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.483 -1.301 0.923 16.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.302 6.302 3 C 0.027 3.973 4 H 0.084 0.916 5 C -0.183 4.183 6 C -0.145 4.145 7 C -0.105 4.105 8 H 0.132 0.868 9 C 0.303 3.697 10 O -0.419 6.419 11 O -0.235 6.235 12 C 0.043 3.957 13 C 0.036 3.964 14 C -0.519 4.519 15 H 0.080 0.920 16 C -0.134 4.134 17 N -0.521 5.521 18 Si 0.720 3.280 19 H -0.201 1.201 20 H -0.214 1.214 21 H -0.202 1.202 22 C -0.247 4.247 23 C -0.183 4.183 24 C -0.151 4.151 25 H 0.102 0.898 26 H 0.059 0.941 27 H 0.058 0.942 28 H 0.088 0.912 29 H 0.100 0.900 30 H 0.091 0.909 31 H 0.106 0.894 32 H 0.087 0.913 33 H 0.057 0.943 34 H 0.070 0.930 35 H 0.084 0.916 36 H 0.099 0.901 37 H 0.106 0.894 38 H 0.083 0.917 39 H 0.103 0.897 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -16.196 -1.465 0.462 16.269 hybrid contribution 0.284 -0.453 0.384 0.658 sum -15.912 -1.918 0.846 16.050 Atomic orbital electron populations 1.22761 0.81492 1.02545 0.99825 1.87967 1.19321 1.27947 1.94973 1.22855 0.94762 0.84212 0.95516 0.91564 1.22907 0.97580 1.00625 0.97160 1.22390 0.94523 0.98376 0.99252 1.21764 0.93045 0.98531 0.97172 0.86847 1.23395 0.82172 0.78430 0.85689 1.90576 1.76179 1.57821 1.17344 1.86592 1.33297 1.61222 1.42372 1.22726 0.86796 0.91256 0.94962 1.18770 0.93390 0.87865 0.96378 1.20256 1.19902 1.13555 0.98206 0.91999 1.24984 0.96018 0.97134 0.95262 1.69989 1.27073 1.36227 1.18815 0.86654 0.78431 0.81340 0.81568 1.20091 1.21352 1.20212 1.23115 1.01990 1.00311 0.99286 1.22520 0.95491 1.04229 0.96022 1.22216 0.91252 1.03761 0.97871 0.89842 0.94146 0.94152 0.91188 0.89984 0.90889 0.89449 0.91336 0.94308 0.92968 0.91633 0.90085 0.89364 0.91749 0.89729 0.88906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.85 101.05 1.10 1.35 16 2 O -0.38 -4.51 10.26 -35.23 -0.36 -4.87 16 3 C 0.08 0.95 3.39 -25.61 -0.09 0.86 16 4 H 0.07 0.66 7.80 -51.93 -0.41 0.25 16 5 C -0.14 -1.52 6.56 -25.07 -0.16 -1.68 16 6 C -0.11 -1.35 6.32 -24.70 -0.16 -1.50 16 7 C -0.09 -1.29 3.37 -90.07 -0.30 -1.59 16 8 H 0.11 1.66 8.14 -51.93 -0.42 1.23 16 9 C 0.46 9.05 7.25 36.00 0.26 9.31 16 10 O -0.53 -11.40 15.17 -18.75 -0.28 -11.69 16 11 O -0.32 -7.24 9.61 -39.28 -0.38 -7.61 16 12 C 0.12 2.76 5.53 37.16 0.21 2.97 16 13 C 0.04 0.90 1.81 -155.65 -0.28 0.62 16 14 C -0.48 -13.07 8.24 -34.44 -0.28 -13.36 16 15 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 16 C 0.07 1.88 5.41 -17.82 -0.10 1.79 16 17 N -0.88 -25.09 12.80 55.43 0.71 -24.38 16 18 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 19 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 20 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 22 C -0.21 -4.55 9.88 -26.72 -0.26 -4.81 16 23 C -0.15 -3.38 9.33 -26.73 -0.25 -3.63 16 24 C -0.11 -1.53 5.99 -25.61 -0.15 -1.68 16 25 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.04 0.29 8.14 -51.93 -0.42 -0.14 16 27 H 0.04 0.29 8.10 -51.93 -0.42 -0.13 16 28 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.08 0.86 8.08 -51.93 -0.42 0.44 16 30 H 0.07 0.91 8.05 -51.93 -0.42 0.49 16 31 H 0.09 1.08 8.14 -51.92 -0.42 0.66 16 32 H 0.07 1.77 8.13 -51.93 -0.42 1.35 16 33 H 0.04 0.85 7.94 -51.93 -0.41 0.44 16 34 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 35 H 0.07 1.28 8.08 -51.93 -0.42 0.86 16 36 H 0.08 1.72 8.14 -51.93 -0.42 1.30 16 37 H 0.09 2.17 8.14 -51.93 -0.42 1.75 16 38 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 39 H 0.08 1.15 7.95 -51.93 -0.41 0.74 16 40 H 0.09 1.34 6.85 -51.93 -0.36 0.98 16 LS Contribution 334.88 15.07 5.05 5.05 Total: -1.00 -30.28 334.88 -7.38 -37.66 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: -6.61 Total: 1.09 kcal Atomic # 6 Polarization: -10.89 SS G_CDS: -0.48 Total: -11.37 kcal Atomic # 7 Polarization: -25.09 SS G_CDS: 0.71 Total: -24.38 kcal Atomic # 8 Polarization: -23.15 SS G_CDS: -1.02 Total: -24.18 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.28 -7.38 -37.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118417566.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.601 kcal (2) G-P(sol) polarization free energy of solvation -30.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds