Wall clock time and date at job start Mon Mar 30 2020 07:37:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42900 * 113.99673 * 2 1 4 4 H 1.08999 * 110.02162 * 331.39234 * 3 2 1 5 5 C 1.54269 * 110.03146 * 92.83911 * 3 2 1 6 6 C 1.54882 * 104.19844 * 142.89416 * 5 3 2 7 7 C 1.54966 * 102.77656 * 322.07948 * 6 5 3 8 8 H 1.08999 * 110.47901 * 279.23557 * 7 6 5 9 9 C 1.50696 * 110.53088 * 156.56935 * 7 6 5 10 10 O 1.20825 * 120.00258 * 245.24450 * 9 7 6 11 11 O 1.34237 * 120.00236 * 65.24410 * 9 7 6 12 12 C 1.45196 * 116.99942 * 179.97438 * 11 9 7 13 13 C 1.53001 * 109.46633 * 180.02562 * 12 11 9 14 14 C 1.50697 * 115.55212 * 39.89404 * 13 12 11 15 15 H 1.08000 * 119.99877 * 264.97155 * 14 13 12 16 16 C 1.37875 * 120.00265 * 84.97318 * 14 13 12 17 17 N 1.31524 * 119.99731 * 358.48094 * 16 14 13 18 18 Si 1.86797 * 120.00189 * 178.49043 * 16 14 13 19 19 H 1.48496 * 109.47479 * 59.99665 * 18 16 14 20 20 H 1.48503 * 109.46924 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47112 * 299.99406 * 18 16 14 22 22 C 1.53008 * 117.49924 * 254.18293 * 13 12 11 23 23 C 1.53005 * 59.99967 * 252.51335 * 22 13 12 24 24 C 1.53880 * 110.03322 * 210.00016 * 3 2 1 25 25 H 1.08996 * 109.47318 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46812 * 299.99714 * 1 2 3 27 27 H 1.08995 * 109.47139 * 59.99738 * 1 2 3 28 28 H 1.09005 * 110.48111 * 261.57311 * 5 3 2 29 29 H 1.08999 * 110.48617 * 24.21002 * 5 3 2 30 30 H 1.08997 * 110.76067 * 80.37008 * 6 5 3 31 31 H 1.09011 * 110.75846 * 203.55765 * 6 5 3 32 32 H 1.09001 * 109.47620 * 299.99864 * 12 11 9 33 33 H 1.08998 * 109.47085 * 60.00276 * 12 11 9 34 34 H 0.96998 * 119.99654 * 179.97438 * 17 16 14 35 35 H 1.09002 * 117.49502 * 0.02562 * 22 13 12 36 36 H 1.08999 * 117.49788 * 145.01993 * 22 13 12 37 37 H 1.08998 * 117.49669 * 252.50827 * 23 22 13 38 38 H 1.08995 * 117.51582 * 107.48398 * 23 22 13 39 39 H 1.09003 * 110.02790 * 359.97438 * 24 3 2 40 40 H 1.08995 * 110.03274 * 121.38587 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3406 2.0121 -0.4904 5 6 2.2907 1.7590 1.4476 6 6 3.6252 2.5389 1.3495 7 6 4.4273 1.7161 0.3098 8 1 4.8830 0.8456 0.7818 9 6 5.4793 2.5737 -0.3451 10 8 5.4071 2.8227 -1.5252 11 8 6.4966 3.0610 0.3826 12 6 7.4731 3.8788 -0.3143 13 6 8.5490 4.3393 0.6713 14 6 8.9904 3.3098 1.6794 15 1 8.5386 3.2861 2.6601 16 6 9.9710 2.3984 1.3499 17 7 10.5001 2.4082 0.1458 18 14 10.5479 1.1494 2.6135 19 1 9.4010 0.3057 3.0351 20 1 11.6006 0.2898 2.0149 21 1 11.1007 1.8595 3.7948 22 6 8.5152 5.8011 1.1220 23 6 9.6028 5.3227 0.1581 24 6 3.3683 1.2779 -0.7228 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.4932 2.4110 1.8043 29 1 2.4007 0.8954 2.1034 30 1 3.4544 3.5534 0.9896 31 1 4.1361 2.5531 2.3124 32 1 7.9357 3.2941 -1.1095 33 1 6.9775 4.7491 -0.7445 34 1 11.1902 1.7672 -0.0859 35 1 7.7261 6.4345 0.7167 36 1 8.8120 6.0183 2.1481 37 1 10.6152 5.2253 0.5500 38 1 9.5298 5.6414 -0.8817 39 1 3.5843 0.2686 -1.0732 40 1 3.3578 1.9710 -1.5639 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118417566.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:37:48 Heat of formation + Delta-G solvation = -136.603940 kcal Electronic energy + Delta-G solvation = -20829.690496 eV Core-core repulsion = 17609.344563 eV Total energy + Delta-G solvation = -3220.345933 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.61446 -39.78875 -38.56433 -37.07106 -36.63670 -33.98980 -30.41647 -29.75067 -28.44824 -27.30590 -26.88481 -23.61519 -22.94344 -21.67989 -21.21768 -20.65809 -18.83204 -18.39537 -17.68100 -17.35655 -17.19960 -16.53465 -16.25330 -15.83557 -15.59529 -14.91348 -14.83833 -14.57724 -14.10660 -13.91058 -13.55323 -13.29286 -12.91539 -12.83042 -12.80388 -12.55790 -12.40162 -12.30335 -12.21500 -12.11077 -11.80166 -11.60493 -11.58352 -11.52405 -11.23003 -10.87169 -10.49136 -10.45599 -10.00682 -8.10366 -6.20893 1.23574 1.43758 1.44933 1.52029 1.85556 2.44600 2.86130 3.19309 3.35838 3.41889 3.50894 3.76784 4.16623 4.21088 4.23690 4.33163 4.35603 4.39120 4.43981 4.50281 4.55313 4.62986 4.64310 4.71240 4.88143 4.89074 4.93324 4.97397 5.01060 5.06564 5.16915 5.20228 5.26521 5.39098 5.59751 5.74219 5.77907 6.32905 6.36968 6.81064 6.88310 7.47180 8.98556 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.022604 B = 0.004664 C = 0.004256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.433287 B = 6001.567231 C = 6577.767493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.406 6.406 3 C 0.088 3.912 4 H 0.083 0.917 5 C -0.134 4.134 6 C -0.104 4.104 7 C -0.085 4.085 8 H 0.117 0.883 9 C 0.456 3.544 10 O -0.551 6.551 11 O -0.335 6.335 12 C 0.126 3.874 13 C 0.002 3.998 14 C -0.493 4.493 15 H 0.056 0.944 16 C 0.022 3.978 17 N -0.914 5.914 18 Si 0.950 3.050 19 H -0.271 1.271 20 H -0.288 1.288 21 H -0.268 1.268 22 C -0.180 4.180 23 C -0.148 4.148 24 C -0.111 4.111 25 H 0.094 0.906 26 H 0.054 0.946 27 H 0.049 0.951 28 H 0.096 0.904 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.035 0.965 33 H 0.054 0.946 34 H 0.259 0.741 35 H 0.093 0.907 36 H 0.086 0.914 37 H 0.068 0.932 38 H 0.075 0.925 39 H 0.078 0.922 40 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.391 -1.194 2.216 18.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.325 6.325 3 C 0.031 3.969 4 H 0.101 0.899 5 C -0.171 4.171 6 C -0.142 4.142 7 C -0.104 4.104 8 H 0.135 0.865 9 C 0.301 3.699 10 O -0.443 6.443 11 O -0.250 6.250 12 C 0.052 3.948 13 C 0.002 3.998 14 C -0.530 4.530 15 H 0.074 0.926 16 C -0.178 4.178 17 N -0.552 5.552 18 Si 0.776 3.224 19 H -0.196 1.196 20 H -0.213 1.213 21 H -0.193 1.193 22 C -0.217 4.217 23 C -0.186 4.186 24 C -0.149 4.149 25 H 0.112 0.888 26 H 0.073 0.927 27 H 0.067 0.933 28 H 0.114 0.886 29 H 0.102 0.898 30 H 0.092 0.908 31 H 0.107 0.893 32 H 0.053 0.947 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.111 0.889 36 H 0.104 0.896 37 H 0.087 0.913 38 H 0.094 0.906 39 H 0.096 0.904 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -18.125 -1.354 1.768 18.261 hybrid contribution 0.829 -0.485 -0.061 0.962 sum -17.296 -1.839 1.707 17.477 Atomic orbital electron populations 1.22975 0.79625 1.03734 1.00936 1.87931 1.21397 1.28062 1.95122 1.22793 0.93610 0.84689 0.95832 0.89895 1.22858 0.96895 1.00745 0.96641 1.22418 0.95240 0.98325 0.98204 1.21940 0.92170 0.98074 0.98215 0.86535 1.24348 0.81930 0.78071 0.85559 1.90556 1.76581 1.58760 1.18439 1.86596 1.33863 1.61573 1.42944 1.22444 0.87051 0.91346 0.93945 1.18901 0.94648 0.89134 0.97147 1.20518 1.19779 1.14284 0.98454 0.92562 1.25691 0.96290 0.98897 0.96890 1.70108 1.27628 1.37032 1.20415 0.85732 0.77947 0.79180 0.79551 1.19635 1.21333 1.19308 1.23129 1.01287 0.98043 0.99223 1.22440 0.94685 1.04384 0.97093 1.22186 0.92459 1.02895 0.97360 0.88756 0.92749 0.93281 0.88594 0.89848 0.90755 0.89320 0.94676 0.92764 0.93235 0.88852 0.89568 0.91335 0.90634 0.90350 0.90164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 10.85 113.37 1.23 1.55 16 2 O -0.41 -8.68 10.26 -148.98 -1.53 -10.21 16 3 C 0.09 1.80 3.39 31.32 0.11 1.90 16 4 H 0.08 1.41 7.80 -2.39 -0.02 1.39 16 5 C -0.13 -2.41 6.56 31.67 0.21 -2.20 16 6 C -0.10 -2.42 6.32 31.91 0.20 -2.21 16 7 C -0.08 -2.50 3.37 -10.44 -0.04 -2.53 16 8 H 0.12 3.36 8.14 -2.39 -0.02 3.34 16 9 C 0.46 18.07 7.25 71.23 0.52 18.59 16 10 O -0.55 -24.21 15.17 21.97 0.33 -23.88 16 11 O -0.34 -15.25 9.61 -51.48 -0.49 -15.74 16 12 C 0.13 6.06 5.53 71.98 0.40 6.46 16 13 C 0.00 0.10 1.81 -52.92 -0.10 0.01 16 14 C -0.49 -26.86 8.24 25.60 0.21 -26.65 16 15 H 0.06 3.05 7.81 -2.91 -0.02 3.02 16 16 C 0.02 1.21 5.41 84.65 0.46 1.67 16 17 N -0.91 -52.84 12.80 21.45 0.27 -52.57 16 18 Si 0.95 43.51 29.54 68.60 2.03 45.53 16 19 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 20 H -0.29 -13.05 7.11 99.48 0.71 -12.35 16 21 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 22 C -0.18 -7.49 9.88 30.60 0.30 -7.19 16 23 C -0.15 -6.90 9.33 30.60 0.29 -6.61 16 24 C -0.11 -2.93 5.99 31.32 0.19 -2.74 16 25 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 27 H 0.05 0.58 8.10 -2.39 -0.02 0.57 16 28 H 0.10 1.28 8.14 -2.38 -0.02 1.26 16 29 H 0.08 1.51 8.08 -2.39 -0.02 1.50 16 30 H 0.07 1.71 8.05 -2.39 -0.02 1.69 16 31 H 0.09 2.04 8.14 -2.38 -0.02 2.02 16 32 H 0.03 1.88 8.13 -2.39 -0.02 1.86 16 33 H 0.05 2.38 7.94 -2.39 -0.02 2.36 16 34 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 35 H 0.09 3.36 8.08 -2.39 -0.02 3.35 16 36 H 0.09 3.49 8.14 -2.39 -0.02 3.47 16 37 H 0.07 3.42 8.14 -2.39 -0.02 3.40 16 38 H 0.08 3.28 8.14 -2.39 -0.02 3.26 16 39 H 0.08 2.12 7.95 -2.39 -0.02 2.10 16 40 H 0.08 2.30 6.85 -2.39 -0.02 2.29 16 Total: -1.00 -65.15 334.88 5.59 -59.56 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: 1.00 Total: 17.27 kcal Atomic # 6 Polarization: -23.94 SS G_CDS: 3.97 Total: -19.97 kcal Atomic # 7 Polarization: -52.84 SS G_CDS: 0.27 Total: -52.57 kcal Atomic # 8 Polarization: -48.14 SS G_CDS: -1.69 Total: -49.83 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.53 kcal Total: -65.15 5.59 -59.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118417566.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.046 kcal (2) G-P(sol) polarization free energy of solvation -65.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds