Wall clock time and date at job start Mon Mar 30 2020 07:37:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42905 * 113.99531 * 2 1 4 4 H 1.08996 * 110.67556 * 29.30063 * 3 2 1 5 5 C 1.54889 * 110.91408 * 265.95265 * 3 2 1 6 6 C 1.54273 * 104.19350 * 203.67080 * 5 3 2 7 7 C 1.53872 * 106.59896 * 23.61307 * 6 5 3 8 8 H 1.09002 * 110.07123 * 240.69445 * 7 6 5 9 9 C 1.50695 * 110.03497 * 119.28138 * 7 6 5 10 10 O 1.20822 * 120.00379 * 242.83363 * 9 7 6 11 11 O 1.34230 * 119.99911 * 62.83532 * 9 7 6 12 12 C 1.45198 * 117.00321 * 180.02562 * 11 9 7 13 13 C 1.52994 * 109.47453 * 179.97438 * 12 11 9 14 14 C 1.50700 * 115.55057 * 39.88872 * 13 12 11 15 15 H 1.08004 * 120.00107 * 264.97042 * 14 13 12 16 16 C 1.37881 * 120.00217 * 84.96898 * 14 13 12 17 17 N 1.31510 * 119.99726 * 358.49450 * 16 14 13 18 18 Si 1.86802 * 119.99895 * 178.49058 * 16 14 13 19 19 H 1.48494 * 109.47363 * 60.00149 * 18 16 14 20 20 H 1.48503 * 109.46812 * 180.02562 * 18 16 14 21 21 H 1.48508 * 109.46850 * 299.99898 * 18 16 14 22 22 C 1.53000 * 117.50192 * 254.17900 * 13 12 11 23 23 C 1.52995 * 60.00267 * 252.50958 * 22 13 12 24 24 C 1.54268 * 106.59863 * 359.97438 * 7 6 5 25 25 H 1.08993 * 109.46990 * 60.00164 * 1 2 3 26 26 H 1.08997 * 109.46835 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47388 * 299.99760 * 1 2 3 28 28 H 1.09003 * 110.48718 * 322.34970 * 5 3 2 29 29 H 1.09000 * 110.48564 * 84.99830 * 5 3 2 30 30 H 1.08996 * 110.03092 * 264.32517 * 6 5 3 31 31 H 1.08998 * 110.06740 * 142.91584 * 6 5 3 32 32 H 1.09010 * 109.46855 * 299.99664 * 12 11 9 33 33 H 1.09003 * 109.47647 * 59.99038 * 12 11 9 34 34 H 0.96997 * 119.99928 * 179.97438 * 17 16 14 35 35 H 1.09008 * 117.49493 * 0.02562 * 22 13 12 36 36 H 1.09001 * 117.50060 * 145.01498 * 22 13 12 37 37 H 1.09003 * 117.49840 * 252.50819 * 23 22 13 38 38 H 1.08996 * 117.50089 * 107.48496 * 23 22 13 39 39 H 1.09004 * 110.48811 * 217.71042 * 24 7 6 40 40 H 1.09005 * 110.48487 * 95.07193 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 1 1.3542 2.0188 0.4991 5 6 2.3283 1.7691 -1.4432 6 6 3.4420 2.8218 -1.2656 7 6 4.1282 2.5135 0.0768 8 1 4.0298 3.3642 0.7512 9 6 5.5847 2.1991 -0.1481 10 8 6.0171 1.1061 0.1316 11 8 6.4018 3.1334 -0.6592 12 6 7.7922 2.7606 -0.8494 13 6 8.5621 3.9450 -1.4369 14 6 8.2002 5.2970 -0.8782 15 1 7.4735 5.9141 -1.3857 16 6 8.7968 5.7462 0.2808 17 7 9.6595 4.9826 0.9149 18 14 8.3796 7.4395 0.9503 19 1 6.9258 7.5113 1.2441 20 1 9.1496 7.6825 2.1966 21 1 8.7324 8.4712 -0.0580 22 6 8.9506 3.8718 -2.9149 23 6 10.0213 3.7122 -1.8338 24 6 3.4071 1.2847 0.6683 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 2.6866 0.9321 -2.0426 29 1 1.4479 2.2191 -1.9022 30 1 3.0100 3.8222 -1.2430 31 1 4.1628 2.7448 -2.0796 32 1 8.2285 2.4833 0.1104 33 1 7.8512 1.9139 -1.5334 34 1 10.0795 5.2988 1.7300 35 1 8.6573 2.9799 -3.4689 36 1 8.9443 4.8017 -3.4836 37 1 10.7194 4.5370 -1.6911 38 1 10.4328 2.7152 -1.6762 39 1 3.3144 1.3809 1.7501 40 1 3.9393 0.3692 0.4101 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118417567.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:37:51 Heat of formation + Delta-G solvation = -119.666641 kcal Electronic energy + Delta-G solvation = -20860.799104 eV Core-core repulsion = 17641.187628 eV Total energy + Delta-G solvation = -3219.611477 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.14513 -38.63041 -36.85379 -35.84688 -35.12995 -31.93076 -29.26920 -28.79944 -26.84857 -26.10673 -25.19409 -22.17324 -21.14125 -20.85645 -19.41853 -19.19774 -17.36531 -16.75091 -16.29285 -16.20444 -15.43447 -15.05760 -14.92101 -14.63388 -14.34064 -13.77855 -13.45624 -12.97577 -12.67223 -12.38351 -12.12769 -11.80386 -11.62258 -11.54089 -11.39910 -11.21029 -10.93465 -10.89561 -10.71849 -10.64880 -10.52458 -10.31115 -9.87115 -9.76722 -9.66671 -9.47045 -8.91709 -8.44343 -8.12893 -6.03447 -4.08472 2.82448 3.27706 3.30907 3.35752 3.38035 3.73310 4.40678 4.45924 4.51755 4.85420 5.05240 5.11257 5.18429 5.23654 5.26711 5.32080 5.40150 5.46115 5.50845 5.51109 5.69285 5.81177 5.96326 6.00297 6.10266 6.19265 6.20944 6.28841 6.34315 6.49801 6.68208 6.77628 7.02812 7.09079 7.19990 7.38474 7.51885 7.88507 8.35724 8.54620 8.91568 9.56526 11.06208 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.024406 B = 0.004580 C = 0.004239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.976927 B = 6112.163506 C = 6603.483976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.379 6.379 3 C 0.082 3.918 4 H 0.071 0.929 5 C -0.145 4.145 6 C -0.110 4.110 7 C -0.086 4.086 8 H 0.111 0.889 9 C 0.458 3.542 10 O -0.525 6.525 11 O -0.322 6.322 12 C 0.116 3.884 13 C 0.036 3.964 14 C -0.481 4.481 15 H 0.062 0.938 16 C 0.069 3.931 17 N -0.884 5.884 18 Si 0.893 3.107 19 H -0.276 1.276 20 H -0.288 1.288 21 H -0.277 1.277 22 C -0.210 4.210 23 C -0.145 4.145 24 C -0.111 4.111 25 H 0.040 0.960 26 H 0.083 0.917 27 H 0.040 0.960 28 H 0.077 0.923 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.068 0.932 33 H 0.039 0.961 34 H 0.261 0.739 35 H 0.065 0.935 36 H 0.081 0.919 37 H 0.088 0.912 38 H 0.064 0.936 39 H 0.077 0.923 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.236 -5.290 -2.306 16.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.298 6.298 3 C 0.024 3.976 4 H 0.089 0.911 5 C -0.183 4.183 6 C -0.148 4.148 7 C -0.105 4.105 8 H 0.129 0.871 9 C 0.301 3.699 10 O -0.415 6.415 11 O -0.236 6.236 12 C 0.043 3.957 13 C 0.036 3.964 14 C -0.519 4.519 15 H 0.080 0.920 16 C -0.134 4.134 17 N -0.521 5.521 18 Si 0.720 3.280 19 H -0.201 1.201 20 H -0.214 1.214 21 H -0.202 1.202 22 C -0.247 4.247 23 C -0.182 4.182 24 C -0.148 4.148 25 H 0.059 0.941 26 H 0.102 0.898 27 H 0.059 0.941 28 H 0.096 0.904 29 H 0.087 0.913 30 H 0.099 0.901 31 H 0.097 0.903 32 H 0.087 0.913 33 H 0.057 0.943 34 H 0.070 0.930 35 H 0.084 0.916 36 H 0.099 0.901 37 H 0.106 0.894 38 H 0.083 0.917 39 H 0.095 0.905 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -14.812 -5.754 -2.072 16.025 hybrid contribution -0.169 1.033 0.529 1.172 sum -14.982 -4.721 -1.544 15.783 Atomic orbital electron populations 1.22770 0.81379 1.02589 0.99855 1.87935 1.19362 1.27601 1.94895 1.23169 0.94544 0.84292 0.95587 0.91052 1.22862 0.98693 0.99335 0.97440 1.21994 0.97402 0.99443 0.95912 1.21512 0.88764 1.00463 0.99763 0.87059 1.23380 0.89531 0.82900 0.74053 1.90588 1.77482 1.24617 1.48845 1.86580 1.22523 1.41650 1.72864 1.22727 0.76207 0.96433 1.00338 1.18768 0.92789 0.94167 0.90700 1.20258 1.23880 0.99239 1.08528 0.92011 1.24985 0.94734 0.97212 0.96478 1.69984 1.28062 1.36437 1.17595 0.86656 0.78545 0.84527 0.78255 1.20139 1.21355 1.20215 1.23116 1.07529 1.00448 0.93613 1.22519 0.93311 1.00143 1.02275 1.22375 0.93641 0.98884 0.99909 0.94125 0.89798 0.94097 0.90421 0.91252 0.90139 0.90272 0.91332 0.94286 0.92964 0.91615 0.90087 0.89364 0.91735 0.90464 0.88378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.86 101.05 1.10 1.35 16 2 O -0.38 -4.59 10.50 -35.23 -0.37 -4.96 16 3 C 0.08 0.93 3.36 -24.75 -0.08 0.84 16 4 H 0.07 0.67 7.85 -51.93 -0.41 0.26 16 5 C -0.15 -1.60 6.56 -25.07 -0.16 -1.77 16 6 C -0.11 -1.38 6.43 -25.61 -0.16 -1.54 16 7 C -0.09 -1.26 3.41 -90.66 -0.31 -1.57 16 8 H 0.11 1.49 8.14 -51.93 -0.42 1.07 16 9 C 0.46 9.05 7.00 36.00 0.25 9.31 16 10 O -0.52 -11.52 15.16 -18.75 -0.28 -11.81 16 11 O -0.32 -7.25 9.58 -39.26 -0.38 -7.63 16 12 C 0.12 2.78 5.53 37.15 0.21 2.98 16 13 C 0.04 0.90 1.81 -155.66 -0.28 0.62 16 14 C -0.48 -13.03 8.24 -34.44 -0.28 -13.31 16 15 H 0.06 1.67 7.81 -52.48 -0.41 1.26 16 16 C 0.07 1.87 5.41 -17.82 -0.10 1.77 16 17 N -0.88 -24.99 12.80 55.43 0.71 -24.28 16 18 Si 0.89 20.99 29.54 -169.99 -5.02 15.97 16 19 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 20 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 22 C -0.21 -4.56 9.88 -26.73 -0.26 -4.82 16 23 C -0.14 -3.38 9.33 -26.73 -0.25 -3.63 16 24 C -0.11 -1.49 5.88 -25.08 -0.15 -1.64 16 25 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 26 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.04 0.29 8.11 -51.93 -0.42 -0.13 16 28 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.08 1.10 7.66 -51.93 -0.40 0.70 16 32 H 0.07 1.78 8.14 -51.92 -0.42 1.35 16 33 H 0.04 0.87 7.94 -51.93 -0.41 0.45 16 34 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 35 H 0.07 1.29 8.08 -51.92 -0.42 0.87 16 36 H 0.08 1.72 8.14 -51.93 -0.42 1.30 16 37 H 0.09 2.17 8.14 -51.93 -0.42 1.75 16 38 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 39 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.10 1.56 6.88 -51.93 -0.36 1.21 16 LS Contribution 334.80 15.07 5.05 5.05 Total: -1.00 -30.49 334.80 -7.40 -37.89 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -6.61 Total: 1.19 kcal Atomic # 6 Polarization: -10.92 SS G_CDS: -0.49 Total: -11.41 kcal Atomic # 7 Polarization: -24.99 SS G_CDS: 0.71 Total: -24.28 kcal Atomic # 8 Polarization: -23.36 SS G_CDS: -1.03 Total: -24.39 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.49 -7.40 -37.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118417567.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.778 kcal (2) G-P(sol) polarization free energy of solvation -30.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds