Wall clock time and date at job start Mon Mar 30 2020 07:37:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42905 * 113.99531 * 2 1 4 4 H 1.08996 * 110.67556 * 29.30063 * 3 2 1 5 5 C 1.54889 * 110.91408 * 265.95265 * 3 2 1 6 6 C 1.54273 * 104.19350 * 203.67080 * 5 3 2 7 7 C 1.53872 * 106.59896 * 23.61307 * 6 5 3 8 8 H 1.09002 * 110.07123 * 240.69445 * 7 6 5 9 9 C 1.50695 * 110.03497 * 119.28138 * 7 6 5 10 10 O 1.20822 * 120.00379 * 242.83363 * 9 7 6 11 11 O 1.34230 * 119.99911 * 62.83532 * 9 7 6 12 12 C 1.45198 * 117.00321 * 180.02562 * 11 9 7 13 13 C 1.52994 * 109.47453 * 179.97438 * 12 11 9 14 14 C 1.50700 * 115.55057 * 39.88872 * 13 12 11 15 15 H 1.08004 * 120.00107 * 264.97042 * 14 13 12 16 16 C 1.37881 * 120.00217 * 84.96898 * 14 13 12 17 17 N 1.31510 * 119.99726 * 358.49450 * 16 14 13 18 18 Si 1.86802 * 119.99895 * 178.49058 * 16 14 13 19 19 H 1.48494 * 109.47363 * 60.00149 * 18 16 14 20 20 H 1.48503 * 109.46812 * 180.02562 * 18 16 14 21 21 H 1.48508 * 109.46850 * 299.99898 * 18 16 14 22 22 C 1.53000 * 117.50192 * 254.17900 * 13 12 11 23 23 C 1.52995 * 60.00267 * 252.50958 * 22 13 12 24 24 C 1.54268 * 106.59863 * 359.97438 * 7 6 5 25 25 H 1.08993 * 109.46990 * 60.00164 * 1 2 3 26 26 H 1.08997 * 109.46835 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47388 * 299.99760 * 1 2 3 28 28 H 1.09003 * 110.48718 * 322.34970 * 5 3 2 29 29 H 1.09000 * 110.48564 * 84.99830 * 5 3 2 30 30 H 1.08996 * 110.03092 * 264.32517 * 6 5 3 31 31 H 1.08998 * 110.06740 * 142.91584 * 6 5 3 32 32 H 1.09010 * 109.46855 * 299.99664 * 12 11 9 33 33 H 1.09003 * 109.47647 * 59.99038 * 12 11 9 34 34 H 0.96997 * 119.99928 * 179.97438 * 17 16 14 35 35 H 1.09008 * 117.49493 * 0.02562 * 22 13 12 36 36 H 1.09001 * 117.50060 * 145.01498 * 22 13 12 37 37 H 1.09003 * 117.49840 * 252.50819 * 23 22 13 38 38 H 1.08996 * 117.50089 * 107.48496 * 23 22 13 39 39 H 1.09004 * 110.48811 * 217.71042 * 24 7 6 40 40 H 1.09005 * 110.48487 * 95.07193 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 1 1.3542 2.0188 0.4991 5 6 2.3283 1.7691 -1.4432 6 6 3.4420 2.8218 -1.2656 7 6 4.1282 2.5135 0.0768 8 1 4.0298 3.3642 0.7512 9 6 5.5847 2.1991 -0.1481 10 8 6.0171 1.1061 0.1316 11 8 6.4018 3.1334 -0.6592 12 6 7.7922 2.7606 -0.8494 13 6 8.5621 3.9450 -1.4369 14 6 8.2002 5.2970 -0.8782 15 1 7.4735 5.9141 -1.3857 16 6 8.7968 5.7462 0.2808 17 7 9.6595 4.9826 0.9149 18 14 8.3796 7.4395 0.9503 19 1 6.9258 7.5113 1.2441 20 1 9.1496 7.6825 2.1966 21 1 8.7324 8.4712 -0.0580 22 6 8.9506 3.8718 -2.9149 23 6 10.0213 3.7122 -1.8338 24 6 3.4071 1.2847 0.6683 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 2.6866 0.9321 -2.0426 29 1 1.4479 2.2191 -1.9022 30 1 3.0100 3.8222 -1.2430 31 1 4.1628 2.7448 -2.0796 32 1 8.2285 2.4833 0.1104 33 1 7.8512 1.9139 -1.5334 34 1 10.0795 5.2988 1.7300 35 1 8.6573 2.9799 -3.4689 36 1 8.9443 4.8017 -3.4836 37 1 10.7194 4.5370 -1.6911 38 1 10.4328 2.7152 -1.6762 39 1 3.3144 1.3809 1.7501 40 1 3.9393 0.3692 0.4101 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118417567.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:37:51 Heat of formation + Delta-G solvation = -136.452115 kcal Electronic energy + Delta-G solvation = -20861.526977 eV Core-core repulsion = 17641.187628 eV Total energy + Delta-G solvation = -3220.339349 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.64842 -39.71973 -38.56393 -37.09544 -36.70917 -33.99061 -30.42521 -29.76268 -28.46121 -27.31563 -26.85936 -23.53663 -22.94825 -21.76175 -21.22220 -20.69090 -18.66632 -18.47503 -17.64363 -17.48264 -16.99152 -16.52091 -16.38714 -15.76083 -15.72610 -15.15119 -14.78432 -14.43751 -14.07673 -13.90335 -13.61707 -13.40295 -12.89767 -12.79279 -12.71952 -12.53525 -12.38694 -12.28565 -12.24930 -12.12112 -11.84476 -11.69103 -11.60805 -11.44267 -11.17771 -10.87305 -10.47468 -10.45308 -10.01589 -8.09744 -6.20721 1.24796 1.44662 1.45678 1.53135 1.82123 2.45159 2.84833 3.19685 3.35058 3.46557 3.48687 3.88955 4.04367 4.15659 4.23749 4.32533 4.36033 4.39777 4.48276 4.48371 4.54385 4.61936 4.63762 4.66746 4.86127 4.88723 4.93025 4.96255 5.05327 5.14004 5.15854 5.18701 5.26022 5.38232 5.58601 5.74061 5.77967 6.33892 6.36955 6.81236 6.88249 7.47371 8.99258 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.024406 B = 0.004580 C = 0.004239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.976927 B = 6112.163506 C = 6603.483976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.407 6.407 3 C 0.088 3.912 4 H 0.100 0.900 5 C -0.139 4.139 6 C -0.107 4.107 7 C -0.081 4.081 8 H 0.129 0.871 9 C 0.452 3.548 10 O -0.553 6.553 11 O -0.334 6.334 12 C 0.126 3.874 13 C 0.003 3.997 14 C -0.493 4.493 15 H 0.057 0.943 16 C 0.022 3.978 17 N -0.914 5.914 18 Si 0.952 3.048 19 H -0.268 1.268 20 H -0.288 1.288 21 H -0.269 1.269 22 C -0.181 4.181 23 C -0.148 4.148 24 C -0.112 4.112 25 H 0.053 0.947 26 H 0.092 0.908 27 H 0.054 0.946 28 H 0.061 0.939 29 H 0.098 0.902 30 H 0.105 0.895 31 H 0.060 0.940 32 H 0.035 0.965 33 H 0.050 0.950 34 H 0.259 0.741 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.069 0.931 38 H 0.074 0.926 39 H 0.087 0.913 40 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.603 -4.344 -2.831 18.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.326 6.326 3 C 0.031 3.969 4 H 0.118 0.882 5 C -0.177 4.177 6 C -0.144 4.144 7 C -0.101 4.101 8 H 0.147 0.853 9 C 0.297 3.703 10 O -0.445 6.445 11 O -0.249 6.249 12 C 0.052 3.948 13 C 0.003 3.997 14 C -0.530 4.530 15 H 0.075 0.925 16 C -0.178 4.178 17 N -0.552 5.552 18 Si 0.778 3.222 19 H -0.193 1.193 20 H -0.214 1.214 21 H -0.194 1.194 22 C -0.218 4.218 23 C -0.186 4.186 24 C -0.149 4.149 25 H 0.072 0.928 26 H 0.111 0.889 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.116 0.884 30 H 0.123 0.877 31 H 0.079 0.921 32 H 0.054 0.946 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.110 0.890 36 H 0.105 0.895 37 H 0.088 0.912 38 H 0.093 0.907 39 H 0.105 0.895 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -17.200 -4.809 -2.613 18.050 hybrid contribution 0.545 0.663 0.682 1.096 sum -16.655 -4.146 -1.931 17.272 Atomic orbital electron populations 1.22992 0.79360 1.03736 1.01144 1.87902 1.21635 1.28058 1.95037 1.23147 0.93494 0.84822 0.95470 0.88230 1.22834 0.99054 0.98406 0.97398 1.22033 0.97336 1.01361 0.93709 1.21717 0.85026 1.01624 1.01683 0.85272 1.24483 0.91088 0.82072 0.72671 1.90569 1.78322 1.25707 1.49918 1.86583 1.21986 1.42792 1.73556 1.22435 0.77099 0.96499 0.98729 1.18902 0.93840 0.93729 0.93256 1.20512 1.23613 1.00181 1.08741 0.92475 1.25712 0.94683 1.00629 0.96787 1.70109 1.29161 1.38050 1.17909 0.85702 0.78525 0.80431 0.77564 1.19338 1.21392 1.19432 1.23127 1.04713 1.01813 0.92142 1.22438 0.92672 0.99971 1.03515 1.22370 0.94966 0.96799 1.00795 0.92801 0.88910 0.92748 0.92011 0.88360 0.87670 0.92072 0.94632 0.93138 0.93221 0.89049 0.89483 0.91240 0.90738 0.89468 0.91475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 10.86 113.37 1.23 1.56 16 2 O -0.41 -9.09 10.50 -148.98 -1.56 -10.65 16 3 C 0.09 1.78 3.36 31.88 0.11 1.89 16 4 H 0.10 1.47 7.85 -2.39 -0.02 1.45 16 5 C -0.14 -2.72 6.56 31.67 0.21 -2.52 16 6 C -0.11 -2.46 6.43 31.32 0.20 -2.26 16 7 C -0.08 -2.30 3.41 -10.82 -0.04 -2.34 16 8 H 0.13 3.21 8.14 -2.39 -0.02 3.19 16 9 C 0.45 18.08 7.00 71.23 0.50 18.58 16 10 O -0.55 -25.08 15.16 21.98 0.33 -24.75 16 11 O -0.33 -15.24 9.58 -51.42 -0.49 -15.74 16 12 C 0.13 6.14 5.53 71.98 0.40 6.54 16 13 C 0.00 0.16 1.81 -52.93 -0.10 0.06 16 14 C -0.49 -26.73 8.24 25.60 0.21 -26.52 16 15 H 0.06 3.07 7.81 -2.91 -0.02 3.05 16 16 C 0.02 1.18 5.41 84.66 0.46 1.63 16 17 N -0.91 -52.63 12.80 21.45 0.27 -52.35 16 18 Si 0.95 42.91 29.54 68.60 2.03 44.94 16 19 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 20 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 21 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 22 C -0.18 -7.62 9.88 30.59 0.30 -7.32 16 23 C -0.15 -6.94 9.33 30.59 0.29 -6.66 16 24 C -0.11 -2.92 5.88 31.66 0.19 -2.73 16 25 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 26 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.05 0.60 8.11 -2.39 -0.02 0.58 16 28 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.06 1.64 7.66 -2.39 -0.02 1.62 16 32 H 0.04 1.92 8.14 -2.38 -0.02 1.90 16 33 H 0.05 2.27 7.94 -2.39 -0.02 2.25 16 34 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 35 H 0.09 3.37 8.08 -2.38 -0.02 3.35 16 36 H 0.09 3.55 8.14 -2.39 -0.02 3.53 16 37 H 0.07 3.48 8.14 -2.39 -0.02 3.46 16 38 H 0.07 3.27 8.14 -2.39 -0.02 3.25 16 39 H 0.09 2.05 8.14 -2.38 -0.02 2.03 16 40 H 0.07 2.19 6.88 -2.38 -0.02 2.17 16 Total: -1.00 -66.67 334.80 5.54 -61.14 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: 1.00 Total: 17.51 kcal Atomic # 6 Polarization: -24.05 SS G_CDS: 3.96 Total: -20.10 kcal Atomic # 7 Polarization: -52.63 SS G_CDS: 0.27 Total: -52.35 kcal Atomic # 8 Polarization: -49.41 SS G_CDS: -1.72 Total: -51.14 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.94 kcal Total: -66.67 5.54 -61.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118417567.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.316 kcal (2) G-P(sol) polarization free energy of solvation -66.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds