Wall clock time and date at job start Mon Mar 30 2020 06:53:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47464 * 2 1 4 4 H 1.09005 * 109.46996 * 305.44241 * 3 2 1 5 5 C 1.53003 * 109.46856 * 65.43733 * 3 2 1 6 6 C 1.52998 * 109.47018 * 62.79198 * 5 3 2 7 7 C 1.54264 * 110.03227 * 283.16813 * 6 5 3 8 8 C 1.54889 * 104.19849 * 217.10420 * 7 6 5 9 9 C 1.54894 * 102.74415 * 37.93999 * 8 7 6 10 10 C 1.53873 * 110.03186 * 165.99854 * 6 5 3 11 11 C 1.50692 * 109.47242 * 185.44187 * 3 2 1 12 12 O 1.20830 * 120.00080 * 240.00468 * 11 3 2 13 13 O 1.34231 * 120.00187 * 59.99667 * 11 3 2 14 14 C 1.45203 * 116.99713 * 180.02562 * 13 11 3 15 15 H 1.08997 * 109.47258 * 329.99772 * 14 13 11 16 16 C 1.52991 * 109.47279 * 90.00411 * 14 13 11 17 17 C 1.50702 * 109.46928 * 210.00249 * 14 13 11 18 18 H 1.08002 * 120.00152 * 359.97438 * 17 14 13 19 19 C 1.37874 * 120.00337 * 180.02562 * 17 14 13 20 20 N 1.31520 * 119.99604 * 359.97438 * 19 17 14 21 21 Si 1.86796 * 120.00294 * 180.02562 * 19 17 14 22 22 H 1.48499 * 109.47178 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.47355 * 120.00038 * 21 19 17 24 24 H 1.48502 * 109.47238 * 239.99645 * 21 19 17 25 25 H 1.09002 * 109.47607 * 176.47409 * 1 2 3 26 26 H 1.09002 * 109.47196 * 296.47684 * 1 2 3 27 27 H 1.09001 * 109.47223 * 56.47297 * 1 2 3 28 28 H 1.09000 * 109.46744 * 240.00018 * 2 1 3 29 29 H 1.09004 * 109.47156 * 120.00187 * 2 1 3 30 30 H 1.08996 * 109.46633 * 182.79098 * 5 3 2 31 31 H 1.09001 * 109.47253 * 302.79327 * 5 3 2 32 32 H 1.09007 * 110.01520 * 44.61177 * 6 5 3 33 33 H 1.09001 * 110.48562 * 335.78586 * 7 6 5 34 34 H 1.09000 * 110.48683 * 98.42778 * 7 6 5 35 35 H 1.09005 * 110.75459 * 279.63081 * 8 7 6 36 36 H 1.08997 * 110.75878 * 156.25439 * 8 7 6 37 37 H 1.08999 * 110.48579 * 203.37593 * 9 8 7 38 38 H 1.08999 * 110.48228 * 80.73806 * 9 8 7 39 39 H 1.08997 * 110.03394 * 238.56633 * 10 6 5 40 40 H 1.08999 * 110.02993 * 359.95684 * 10 6 5 41 41 H 1.08998 * 109.47573 * 179.97438 * 16 14 13 42 42 H 1.09007 * 109.47591 * 59.99523 * 16 14 13 43 43 H 1.09004 * 109.47547 * 299.99880 * 16 14 13 44 44 H 0.96997 * 119.99696 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5993 1.9837 -0.8373 5 6 1.6447 2.1232 1.3120 6 6 2.3195 1.4052 2.4825 7 6 1.5829 0.0847 2.7880 8 6 1.6304 -0.0283 4.3321 9 6 1.4332 1.4387 4.7883 10 6 2.2244 2.2661 3.7543 11 6 3.5410 1.4445 -0.1347 12 8 4.2245 1.9396 0.7300 13 8 4.1186 0.8963 -1.2153 14 6 5.5688 0.9338 -1.2778 15 1 5.9326 1.8157 -0.7507 16 6 6.1403 -0.3246 -0.6216 17 6 6.0081 0.9928 -2.7182 18 1 5.2711 1.0009 -3.5076 19 6 7.3508 1.0354 -3.0283 20 7 8.2483 1.0250 -2.0670 21 14 7.8952 1.1093 -4.8136 22 1 6.7007 1.1103 -5.6958 23 1 8.6801 2.3493 -5.0409 24 1 8.7379 -0.0736 -5.1235 25 1 -0.3634 -1.0257 -0.0632 26 1 -0.3634 0.4582 0.9199 27 1 -0.3634 0.5676 -0.8567 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.9647 3.1649 1.2915 31 1 0.5624 2.0777 1.4332 32 1 3.3643 1.2045 2.2448 33 1 0.5509 0.1344 2.4407 34 1 2.1012 -0.7565 2.3278 35 1 2.5971 -0.4089 4.6619 36 1 0.8203 -0.6590 4.6983 37 1 1.8422 1.5855 5.7880 38 1 0.3771 1.7070 4.7641 39 1 3.2228 2.4824 4.1344 40 1 1.6982 3.1957 3.5374 41 1 7.2289 -0.2967 -0.6689 42 1 5.7765 -1.2066 -1.1488 43 1 5.8226 -0.3674 0.4203 44 1 9.1930 1.0546 -2.2851 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000114623859.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:58 Heat of formation + Delta-G solvation = -115.230403 kcal Electronic energy + Delta-G solvation = -21839.733525 eV Core-core repulsion = 18756.147513 eV Total energy + Delta-G solvation = -3083.586012 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.18619 -38.30640 -35.80086 -34.96283 -33.21100 -30.63996 -29.65515 -28.51414 -27.71960 -25.31429 -24.48112 -22.29041 -20.79083 -20.54224 -19.63335 -18.93954 -17.03155 -16.61775 -15.83645 -15.48856 -15.27573 -14.63801 -14.50206 -14.13062 -13.51608 -13.27194 -13.03390 -12.76854 -12.59538 -12.15784 -12.03044 -11.87768 -11.63676 -11.30537 -11.17816 -11.09940 -11.03440 -10.97433 -10.81667 -10.60242 -10.49789 -10.33777 -10.29129 -10.24921 -10.08955 -9.90044 -9.45951 -9.11066 -8.86449 -8.47831 -6.17148 -4.23696 3.06636 3.24035 3.30810 3.35826 3.76533 4.35246 4.65971 4.71292 4.82413 4.99591 5.07783 5.15807 5.22943 5.38423 5.44013 5.51858 5.58300 5.71911 5.76286 5.76811 5.84267 5.86133 5.91665 5.95283 6.00289 6.09506 6.17073 6.20316 6.20987 6.34060 6.43178 6.49174 6.55656 6.65069 6.81015 6.90854 6.95725 7.24610 7.63011 7.76012 7.98504 8.17785 8.69520 8.94089 9.42010 10.90335 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.029362 B = 0.004563 C = 0.004273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.384821 B = 6134.238011 C = 6550.809462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.138 4.138 3 C -0.083 4.083 4 H 0.099 0.901 5 C -0.094 4.094 6 C -0.108 4.108 7 C -0.128 4.128 8 C -0.128 4.128 9 C -0.124 4.124 10 C -0.116 4.116 11 C 0.455 3.545 12 O -0.516 6.516 13 O -0.356 6.356 14 C 0.214 3.786 15 H 0.045 0.955 16 C -0.153 4.153 17 C -0.519 4.519 18 H 0.068 0.932 19 C 0.062 3.938 20 N -0.889 5.889 21 Si 0.910 3.090 22 H -0.270 1.270 23 H -0.282 1.282 24 H -0.281 1.281 25 H 0.054 0.946 26 H 0.058 0.942 27 H 0.054 0.946 28 H 0.074 0.926 29 H 0.088 0.912 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.104 0.896 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.060 0.940 37 H 0.058 0.942 38 H 0.060 0.940 39 H 0.061 0.939 40 H 0.059 0.941 41 H 0.098 0.902 42 H 0.035 0.965 43 H 0.015 0.985 44 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.029 -1.276 8.981 17.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.175 4.175 3 C -0.102 4.102 4 H 0.117 0.883 5 C -0.131 4.131 6 C -0.126 4.126 7 C -0.164 4.164 8 C -0.165 4.165 9 C -0.161 4.161 10 C -0.154 4.154 11 C 0.298 3.702 12 O -0.407 6.407 13 O -0.272 6.272 14 C 0.162 3.838 15 H 0.063 0.937 16 C -0.211 4.211 17 C -0.557 4.557 18 H 0.087 0.913 19 C -0.140 4.140 20 N -0.527 5.527 21 Si 0.737 3.263 22 H -0.195 1.195 23 H -0.208 1.208 24 H -0.207 1.207 25 H 0.073 0.927 26 H 0.077 0.923 27 H 0.073 0.927 28 H 0.093 0.907 29 H 0.106 0.894 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.122 0.878 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.078 0.922 41 H 0.116 0.884 42 H 0.055 0.945 43 H 0.034 0.966 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -14.575 -1.134 9.220 17.283 hybrid contribution 0.559 0.132 -0.884 1.054 sum -14.015 -1.002 8.336 16.338 Atomic orbital electron populations 1.21871 0.95487 1.01609 1.01741 1.21966 0.96136 0.94798 1.04636 1.21078 0.89717 0.99179 1.00205 0.88335 1.21605 0.99751 0.99424 0.92367 1.22157 1.02569 0.94016 0.93872 1.22875 1.00648 0.97875 0.95042 1.22542 1.01225 0.96444 0.96337 1.22355 0.99858 0.95449 0.98479 1.22154 1.00049 0.98160 0.94989 1.23394 0.91426 0.74917 0.80466 1.90514 1.65719 1.43612 1.40853 1.86484 1.28849 1.70684 1.41205 1.20591 0.69744 0.95914 0.97556 0.93689 1.22141 1.04912 0.98068 0.95960 1.21079 0.92132 1.51754 0.90772 0.91342 1.24887 0.96019 0.94740 0.98364 1.69914 1.01381 1.49739 1.31714 0.86241 0.78686 0.77734 0.83609 1.19485 1.20764 1.20729 0.92677 0.92338 0.92728 0.90687 0.89420 0.91521 0.91107 0.87816 0.91141 0.91299 0.91719 0.92136 0.92286 0.92110 0.92006 0.92207 0.88359 0.94543 0.96604 0.92507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.14 37.16 0.34 -1.16 16 2 C -0.14 -1.81 4.83 -26.73 -0.13 -1.94 16 3 C -0.08 -1.24 2.60 -91.77 -0.24 -1.48 16 4 H 0.10 1.37 8.14 -51.93 -0.42 0.94 16 5 C -0.09 -1.24 3.94 -26.73 -0.11 -1.35 16 6 C -0.11 -1.49 2.45 -89.50 -0.22 -1.71 16 7 C -0.13 -1.48 4.44 -25.07 -0.11 -1.60 16 8 C -0.13 -1.36 6.91 -24.74 -0.17 -1.53 16 9 C -0.12 -1.29 6.83 -25.07 -0.17 -1.46 16 10 C -0.12 -1.44 6.43 -25.61 -0.16 -1.60 16 11 C 0.45 9.39 6.83 36.00 0.25 9.64 16 12 O -0.52 -11.82 12.80 -18.75 -0.24 -12.06 16 13 O -0.36 -8.51 9.66 -39.26 -0.38 -8.89 16 14 C 0.21 5.81 2.56 -27.89 -0.07 5.74 16 15 H 0.05 1.35 7.16 -51.93 -0.37 0.98 16 16 C -0.15 -3.92 9.32 37.15 0.35 -3.57 16 17 C -0.52 -14.73 8.90 -34.44 -0.31 -15.04 16 18 H 0.07 1.92 7.81 -52.49 -0.41 1.51 16 19 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 20 N -0.89 -25.48 11.32 55.43 0.63 -24.85 16 21 Si 0.91 21.23 29.54 -169.99 -5.02 16.21 16 22 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.53 4.94 -51.93 -0.26 0.28 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.07 1.09 7.98 -51.93 -0.41 0.67 16 29 H 0.09 1.15 3.82 -51.93 -0.20 0.95 16 30 H 0.07 0.94 7.98 -51.93 -0.41 0.52 16 31 H 0.07 0.77 6.22 -51.93 -0.32 0.44 16 32 H 0.10 1.83 5.14 -51.92 -0.27 1.57 16 33 H 0.07 0.73 5.15 -51.93 -0.27 0.46 16 34 H 0.07 0.85 6.16 -51.93 -0.32 0.53 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.06 0.69 7.59 -51.93 -0.39 0.30 16 41 H 0.10 2.69 6.07 -51.93 -0.32 2.37 16 42 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 330.88 15.07 4.99 4.99 Total: -1.00 -29.80 330.88 -8.19 -37.99 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -7.31 Total: 2.07 kcal Atomic # 6 Polarization: -14.59 SS G_CDS: -0.85 Total: -15.45 kcal Atomic # 7 Polarization: -25.48 SS G_CDS: 0.63 Total: -24.85 kcal Atomic # 8 Polarization: -20.33 SS G_CDS: -0.62 Total: -20.95 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -29.80 -8.19 -37.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000114623859.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.242 kcal (2) G-P(sol) polarization free energy of solvation -29.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds