Wall clock time and date at job start Mon Mar 30 2020 06:55:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47204 * 2 1 4 4 H 1.09007 * 109.46721 * 305.00148 * 3 2 1 5 5 C 1.50694 * 109.47355 * 184.99859 * 3 2 1 6 6 H 1.08000 * 120.00563 * 239.99848 * 5 3 2 7 7 C 1.37885 * 119.99902 * 60.00012 * 5 3 2 8 8 N 1.31516 * 119.99913 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 119.99766 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.46985 * 179.97438 * 9 7 5 11 11 H 1.48494 * 109.47276 * 299.99832 * 9 7 5 12 12 H 1.48498 * 109.47150 * 60.00043 * 9 7 5 13 13 O 1.45198 * 109.47199 * 64.99678 * 3 2 1 14 14 C 1.34233 * 117.00153 * 270.00621 * 13 3 2 15 15 O 1.20821 * 120.00092 * 359.97438 * 14 13 3 16 16 C 1.50705 * 119.99698 * 180.02562 * 14 13 3 17 17 H 1.08994 * 109.47055 * 299.98976 * 16 14 13 18 18 C 1.52997 * 109.47374 * 59.99838 * 16 14 13 19 19 C 1.52993 * 109.47226 * 179.97438 * 18 16 14 20 20 C 1.53008 * 109.47109 * 299.99784 * 19 18 16 21 21 C 1.52997 * 109.46900 * 60.00016 * 20 19 18 22 22 C 1.53000 * 109.47299 * 180.02562 * 21 20 19 23 23 C 1.52996 * 109.47540 * 60.00136 * 21 20 19 24 24 C 1.53003 * 109.47182 * 299.99930 * 21 20 19 25 25 H 1.09000 * 109.46755 * 179.97438 * 1 2 3 26 26 H 1.08992 * 109.46922 * 299.99976 * 1 2 3 27 27 H 1.08997 * 109.46919 * 60.00309 * 1 2 3 28 28 H 1.09001 * 109.47496 * 240.00053 * 2 1 3 29 29 H 1.09002 * 109.47332 * 119.99482 * 2 1 3 30 30 H 0.97001 * 119.99646 * 179.97438 * 8 7 5 31 31 H 1.09004 * 109.47196 * 299.99913 * 18 16 14 32 32 H 1.09004 * 109.47350 * 59.99943 * 18 16 14 33 33 H 1.08993 * 109.47354 * 179.97438 * 19 18 16 34 34 H 1.08998 * 109.47615 * 59.99704 * 19 18 16 35 35 H 1.08995 * 109.47117 * 299.99996 * 20 19 18 36 36 H 1.09001 * 109.47260 * 179.97438 * 20 19 18 37 37 H 1.09002 * 109.47640 * 179.97438 * 22 21 20 38 38 H 1.09001 * 109.46975 * 299.99902 * 22 21 20 39 39 H 1.09004 * 109.47091 * 59.99632 * 22 21 20 40 40 H 1.09008 * 109.47138 * 299.99917 * 23 21 20 41 41 H 1.09001 * 109.47092 * 59.99879 * 23 21 20 42 42 H 1.08998 * 109.47778 * 180.02562 * 23 21 20 43 43 H 1.08995 * 109.47135 * 300.00204 * 24 21 20 44 44 H 1.09007 * 109.47144 * 179.97438 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4063 0.3366 -2.1729 9 14 6.0050 0.8813 -1.3817 10 1 6.3979 0.2167 -2.6503 11 1 6.4994 2.2815 -1.3821 12 1 6.5975 0.1474 -0.2348 13 8 1.6559 2.0917 1.2406 14 6 0.4727 2.7254 1.2559 15 8 -0.2189 2.7376 0.2653 16 6 0.0074 3.4226 2.5084 17 1 -0.0713 2.6986 3.3193 18 6 1.0139 4.5096 2.8909 19 6 0.5412 5.2178 4.1620 20 6 -0.8272 5.8550 3.9120 21 6 -1.8337 4.7680 3.5296 22 6 -3.2019 5.4051 3.2790 23 6 -1.9445 3.7520 4.6681 24 6 -1.3610 4.0597 2.2583 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.8294 -0.0612 -2.9498 31 1 1.9889 4.0558 3.0685 32 1 1.0925 5.2337 2.0799 33 1 1.2584 5.9918 4.4348 34 1 0.4622 4.4941 4.9732 35 1 -0.7483 6.5787 3.1009 36 1 -1.1642 6.3591 4.8178 37 1 -3.9189 4.6308 3.0060 38 1 -3.5389 5.9099 4.1843 39 1 -3.1227 6.1287 2.4676 40 1 -0.9696 3.2980 4.8462 41 1 -2.2813 4.2565 5.5737 42 1 -2.6612 2.9773 4.3955 43 1 -1.2821 4.7835 1.4472 44 1 -2.0778 3.2850 1.9861 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187978444.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:51 Heat of formation + Delta-G solvation = -145.956758 kcal Electronic energy + Delta-G solvation = -21913.049421 eV Core-core repulsion = 18828.131013 eV Total energy + Delta-G solvation = -3084.918407 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.74013 -40.02570 -37.57174 -35.53233 -34.32617 -33.32198 -32.01510 -29.34964 -28.15392 -27.27832 -25.76340 -24.67029 -22.62161 -22.13318 -21.00328 -19.40223 -18.82374 -18.29271 -17.26147 -17.12267 -16.44873 -15.76162 -15.55145 -15.27528 -15.03994 -14.77159 -14.46079 -14.15274 -13.80192 -13.61890 -13.35469 -13.25700 -13.10068 -12.89599 -12.80566 -12.76783 -12.56393 -12.43965 -12.32290 -12.15134 -11.97644 -11.88463 -11.77164 -11.52176 -11.37242 -11.06992 -10.98928 -10.85402 -10.80823 -10.51894 -8.27809 -6.44963 1.39354 1.41626 1.44435 1.52501 2.07352 2.42624 3.01528 3.61744 3.70563 3.74168 4.06802 4.10217 4.26438 4.32356 4.34928 4.37526 4.43060 4.43749 4.55301 4.60816 4.72019 4.81102 4.84056 4.90885 5.00382 5.05691 5.08778 5.10386 5.16395 5.17881 5.20173 5.23963 5.28188 5.36576 5.40264 5.45701 5.50022 5.53015 5.65939 5.67407 5.98445 6.15599 6.60301 7.03565 7.27589 8.78789 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.029249 B = 0.004777 C = 0.004356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.079380 B = 5859.620498 C = 6425.904090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.130 4.130 3 C 0.224 3.776 4 H 0.002 0.998 5 C -0.551 4.551 6 H 0.065 0.935 7 C 0.018 3.982 8 N -0.915 5.915 9 Si 0.980 3.020 10 H -0.277 1.277 11 H -0.269 1.269 12 H -0.263 1.263 13 O -0.363 6.363 14 C 0.445 3.555 15 O -0.547 6.547 16 C -0.073 4.073 17 H 0.120 0.880 18 C -0.109 4.109 19 C -0.111 4.111 20 C -0.108 4.108 21 C -0.060 4.060 22 C -0.138 4.138 23 C -0.147 4.147 24 C -0.086 4.086 25 H 0.062 0.938 26 H 0.036 0.964 27 H 0.033 0.967 28 H 0.086 0.914 29 H 0.046 0.954 30 H 0.270 0.730 31 H 0.067 0.933 32 H 0.052 0.948 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.057 0.943 36 H 0.085 0.915 37 H 0.052 0.948 38 H 0.073 0.927 39 H 0.050 0.950 40 H 0.060 0.940 41 H 0.073 0.927 42 H 0.051 0.949 43 H 0.052 0.948 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.889 8.617 14.672 19.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.168 4.168 3 C 0.171 3.829 4 H 0.020 0.980 5 C -0.588 4.588 6 H 0.083 0.917 7 C -0.182 4.182 8 N -0.553 5.553 9 Si 0.803 3.197 10 H -0.202 1.202 11 H -0.194 1.194 12 H -0.188 1.188 13 O -0.280 6.280 14 C 0.290 3.710 15 O -0.438 6.438 16 C -0.092 4.092 17 H 0.137 0.863 18 C -0.147 4.147 19 C -0.148 4.148 20 C -0.145 4.145 21 C -0.060 4.060 22 C -0.196 4.196 23 C -0.204 4.204 24 C -0.123 4.123 25 H 0.081 0.919 26 H 0.055 0.945 27 H 0.052 0.948 28 H 0.104 0.896 29 H 0.064 0.936 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.071 0.929 33 H 0.098 0.902 34 H 0.099 0.901 35 H 0.076 0.924 36 H 0.104 0.896 37 H 0.071 0.929 38 H 0.092 0.908 39 H 0.069 0.931 40 H 0.079 0.921 41 H 0.092 0.908 42 H 0.070 0.930 43 H 0.071 0.929 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -9.054 8.498 14.177 18.846 hybrid contribution 0.799 -0.352 -1.084 1.392 sum -8.254 8.146 13.093 17.491 Atomic orbital electron populations 1.21701 0.96324 1.00560 1.00002 1.21866 0.94435 0.98182 1.02300 1.20325 0.94514 0.89241 0.78802 0.97995 1.21305 0.90551 1.40028 1.06932 0.91672 1.25809 1.04260 0.93827 0.94314 1.70013 1.37527 1.37900 1.09849 0.85273 0.77671 0.78782 0.77933 1.20185 1.19403 1.18808 1.86466 1.36248 1.62984 1.42259 1.24566 0.79306 0.75894 0.91194 1.90569 1.56027 1.59559 1.37691 1.21233 0.97533 0.98300 0.92104 0.86269 1.21514 0.97540 0.96150 0.99510 1.21565 0.97230 1.00205 0.95831 1.21644 0.93914 0.96875 1.02101 1.20538 0.95930 0.95793 0.93749 1.21833 0.95157 1.00422 1.02159 1.22010 1.02068 0.98512 0.97819 1.21458 0.93187 0.99316 0.98385 0.91919 0.94477 0.94754 0.89590 0.93568 0.92051 0.91451 0.92887 0.90204 0.90137 0.92430 0.89597 0.92905 0.90794 0.93081 0.92119 0.90794 0.92981 0.92907 0.92449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.82 8.57 71.98 0.62 -5.21 16 2 C -0.13 -6.72 5.49 30.60 0.17 -6.55 16 3 C 0.22 12.57 2.25 29.85 0.07 12.64 16 4 H 0.00 0.14 7.16 -2.38 -0.02 0.13 16 5 C -0.55 -31.85 8.90 25.60 0.23 -31.62 16 6 H 0.07 3.69 7.81 -2.91 -0.02 3.66 16 7 C 0.02 0.99 5.29 84.66 0.45 1.43 16 8 N -0.92 -53.20 11.29 21.45 0.24 -52.95 16 9 Si 0.98 43.34 29.54 68.60 2.03 45.37 16 10 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 11 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 12 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 13 O -0.36 -17.91 9.71 -51.45 -0.50 -18.41 16 14 C 0.45 19.19 5.71 71.24 0.41 19.60 16 15 O -0.55 -26.67 13.12 21.98 0.29 -26.38 16 16 C -0.07 -2.21 2.35 -11.54 -0.03 -2.24 16 17 H 0.12 3.20 6.43 -2.39 -0.02 3.18 16 18 C -0.11 -2.93 5.13 30.59 0.16 -2.77 16 19 C -0.11 -2.03 5.65 30.59 0.17 -1.86 16 20 C -0.11 -1.81 4.73 30.60 0.14 -1.66 16 21 C -0.06 -1.13 0.77 -52.18 -0.04 -1.17 16 22 C -0.14 -2.28 8.47 71.98 0.61 -1.67 16 23 C -0.15 -2.40 7.78 71.98 0.56 -1.84 16 24 C -0.09 -2.31 3.30 30.60 0.10 -2.21 16 25 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 26 H 0.04 1.60 6.06 -2.39 -0.01 1.59 16 27 H 0.03 1.65 7.80 -2.39 -0.02 1.63 16 28 H 0.09 4.84 5.95 -2.39 -0.01 4.83 16 29 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 30 H 0.27 14.72 8.31 -92.71 -0.77 13.95 16 31 H 0.07 1.95 8.11 -2.39 -0.02 1.94 16 32 H 0.05 1.54 8.14 -2.38 -0.02 1.52 16 33 H 0.08 1.26 8.14 -2.39 -0.02 1.25 16 34 H 0.08 1.30 6.43 -2.39 -0.02 1.28 16 35 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.05 0.88 8.14 -2.38 -0.02 0.86 16 40 H 0.06 1.01 4.81 -2.38 -0.01 1.00 16 41 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 43 H 0.05 1.59 8.10 -2.39 -0.02 1.57 16 44 H 0.06 1.66 8.10 -2.38 -0.02 1.64 16 Total: -1.00 -66.17 334.00 6.62 -59.55 By element: Atomic # 1 Polarization: 17.00 SS G_CDS: 0.95 Total: 17.95 kcal Atomic # 6 Polarization: -28.73 SS G_CDS: 3.61 Total: -25.12 kcal Atomic # 7 Polarization: -53.20 SS G_CDS: 0.24 Total: -52.95 kcal Atomic # 8 Polarization: -44.58 SS G_CDS: -0.21 Total: -44.79 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Total: -66.17 6.62 -59.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187978444.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.409 kcal (2) G-P(sol) polarization free energy of solvation -66.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds