Wall clock time and date at job start Mon Mar 30 2020 06:55:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.46856 * 2 1 4 4 H 1.08996 * 109.47072 * 305.58819 * 3 2 1 5 5 C 1.50696 * 109.47072 * 185.58410 * 3 2 1 6 6 H 1.08000 * 120.00802 * 274.99224 * 5 3 2 7 7 C 1.37884 * 119.99457 * 94.99759 * 5 3 2 8 8 N 1.31516 * 119.99443 * 184.83654 * 7 5 3 9 9 Si 1.86794 * 120.00024 * 4.84037 * 7 5 3 10 10 H 1.48498 * 109.47316 * 84.86637 * 9 7 5 11 11 H 1.48504 * 109.47080 * 204.86445 * 9 7 5 12 12 H 1.48494 * 109.47509 * 324.86463 * 9 7 5 13 13 O 1.45206 * 109.46875 * 65.58871 * 3 2 1 14 14 C 1.34226 * 117.00002 * 269.99817 * 13 3 2 15 15 O 1.20830 * 120.00030 * 0.02562 * 14 13 3 16 16 C 1.50697 * 120.00233 * 179.97438 * 14 13 3 17 17 C 1.52997 * 109.47374 * 179.97438 * 16 14 13 18 18 C 1.54242 * 108.89993 * 297.88704 * 17 16 14 19 19 C 1.50468 * 108.52815 * 159.25974 * 18 17 16 20 20 C 1.54066 * 112.49939 * 94.15115 * 19 18 17 21 21 C 1.54062 * 112.81786 * 318.28744 * 20 19 18 22 22 C 1.50476 * 112.49633 * 318.28131 * 21 20 19 23 23 C 1.45542 * 108.89809 * 175.00082 * 17 16 14 24 24 H 1.09008 * 109.46229 * 179.97438 * 1 2 3 25 25 H 1.08992 * 109.47285 * 60.00088 * 1 2 3 26 26 H 1.08996 * 109.47174 * 299.99636 * 1 2 3 27 27 H 1.09001 * 109.47416 * 119.99768 * 2 1 3 28 28 H 1.09004 * 109.47448 * 240.00396 * 2 1 3 29 29 H 0.97004 * 119.99626 * 179.97438 * 8 7 5 30 30 H 1.08997 * 109.47428 * 300.00864 * 16 14 13 31 31 H 1.09001 * 109.46619 * 60.00659 * 16 14 13 32 32 H 1.09001 * 108.87386 * 56.40045 * 17 16 14 33 33 H 1.08995 * 109.62785 * 278.97558 * 18 17 16 34 34 H 1.09001 * 109.62570 * 39.55512 * 18 17 16 35 35 H 1.09003 * 108.87878 * 333.37697 * 19 18 17 36 36 H 1.09004 * 108.88273 * 214.93511 * 19 18 17 37 37 H 1.09004 * 108.81855 * 197.42645 * 20 19 18 38 38 H 1.09008 * 108.72855 * 79.08739 * 20 19 18 39 39 H 1.08999 * 108.87947 * 197.50235 * 21 20 19 40 40 H 1.09003 * 108.87921 * 79.05872 * 21 20 19 41 41 H 1.08996 * 109.62714 * 334.44350 * 22 21 20 42 42 H 1.08995 * 109.63330 * 213.85925 * 22 21 20 43 43 H 1.08995 * 108.89875 * 303.44966 * 23 17 16 44 44 H 1.09007 * 108.89465 * 62.03517 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5972 1.9844 -0.8357 5 6 3.5406 1.4449 -0.1383 6 1 4.1638 1.3341 0.7368 7 6 4.1180 1.5885 -1.3821 8 7 5.4230 1.4954 -1.5159 9 14 3.0467 1.9153 -2.8770 10 1 2.7807 3.3722 -2.9864 11 1 3.7471 1.4469 -4.0999 12 1 1.7607 1.1868 -2.7334 13 8 1.6678 2.0874 1.2466 14 6 0.4849 2.7211 1.2755 15 8 -0.2167 2.7360 0.2919 16 6 0.0312 3.4129 2.5351 17 6 -1.3393 4.0515 2.3009 18 6 -1.2116 5.1157 1.1918 19 6 -2.5770 5.3684 0.6121 20 6 -3.2888 6.5612 1.2784 21 6 -3.1060 6.5878 2.8079 22 6 -3.2297 5.2215 3.4263 23 6 -1.8184 4.6126 3.5555 24 1 -0.3632 -1.0278 -0.0005 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 5.8292 1.5960 -2.3910 30 1 -0.0398 2.6855 3.3438 31 1 0.7507 4.1862 2.8041 32 1 -2.0356 3.2808 1.9702 33 1 -0.8166 6.0395 1.6145 34 1 -0.5438 4.7522 0.4107 35 1 -3.1872 4.4749 0.7445 36 1 -2.4757 5.5690 -0.4545 37 1 -4.3538 6.5059 1.0526 38 1 -2.8890 7.4853 0.8605 39 1 -3.8624 7.2413 3.2422 40 1 -2.1199 6.9912 3.0382 41 1 -3.8458 4.5861 2.7901 42 1 -3.6836 5.3062 4.4136 43 1 -1.8415 3.8249 4.3085 44 1 -1.1281 5.3910 3.8805 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188065602.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:37 Heat of formation + Delta-G solvation = -127.061552 kcal Electronic energy + Delta-G solvation = -21784.520893 eV Core-core repulsion = 18700.421843 eV Total energy + Delta-G solvation = -3084.099050 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.16962 -38.73353 -35.93578 -33.66709 -33.31208 -32.07177 -31.95742 -28.64507 -27.57289 -24.82979 -23.88247 -22.85802 -21.04833 -20.09869 -19.47945 -19.24853 -17.38770 -16.55153 -15.86987 -15.75897 -15.56497 -14.64252 -14.61278 -14.31226 -13.59306 -13.21153 -12.99234 -12.90768 -12.81218 -12.62498 -12.14289 -12.10736 -12.06619 -11.68284 -11.51042 -11.30841 -10.98969 -10.79108 -10.75852 -10.58509 -10.50425 -10.37461 -10.33281 -10.17323 -10.02497 -9.92025 -9.58855 -9.25254 -9.00149 -8.69346 -6.27318 -4.30872 2.99139 3.20776 3.28896 3.34765 3.65020 4.26520 4.54713 4.63527 4.79081 5.02306 5.05449 5.08531 5.18893 5.27080 5.32415 5.43345 5.60824 5.66733 5.72588 5.75768 5.80799 5.91624 5.93457 5.99162 6.02672 6.05470 6.10907 6.14513 6.16273 6.24474 6.30231 6.38608 6.45211 6.56831 6.62557 6.63718 6.81117 6.86750 7.18191 7.43328 7.60075 8.27766 8.71349 8.85148 9.32493 10.84160 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.026677 B = 0.004863 C = 0.004641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.359150 B = 5756.738803 C = 6032.311436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.131 4.131 3 C 0.188 3.812 4 H 0.047 0.953 5 C -0.519 4.519 6 H 0.084 0.916 7 C 0.082 3.918 8 N -0.883 5.883 9 Si 0.869 3.131 10 H -0.271 1.271 11 H -0.282 1.282 12 H -0.259 1.259 13 O -0.350 6.350 14 C 0.449 3.551 15 O -0.518 6.518 16 C -0.118 4.118 17 C -0.072 4.072 18 C -0.117 4.117 19 C -0.112 4.112 20 C -0.117 4.117 21 C -0.118 4.118 22 C -0.115 4.115 23 C -0.113 4.113 24 H 0.039 0.961 25 H 0.053 0.947 26 H 0.043 0.957 27 H 0.061 0.939 28 H 0.069 0.931 29 H 0.270 0.730 30 H 0.096 0.904 31 H 0.098 0.902 32 H 0.075 0.925 33 H 0.057 0.943 34 H 0.082 0.918 35 H 0.059 0.941 36 H 0.056 0.944 37 H 0.054 0.946 38 H 0.055 0.945 39 H 0.053 0.947 40 H 0.061 0.939 41 H 0.065 0.935 42 H 0.060 0.940 43 H 0.059 0.941 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.194 7.082 8.327 19.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.169 4.169 3 C 0.135 3.865 4 H 0.065 0.935 5 C -0.557 4.557 6 H 0.102 0.898 7 C -0.122 4.122 8 N -0.519 5.519 9 Si 0.695 3.305 10 H -0.196 1.196 11 H -0.208 1.208 12 H -0.184 1.184 13 O -0.266 6.266 14 C 0.293 3.707 15 O -0.409 6.409 16 C -0.156 4.156 17 C -0.091 4.091 18 C -0.154 4.154 19 C -0.150 4.150 20 C -0.155 4.155 21 C -0.156 4.156 22 C -0.153 4.153 23 C -0.151 4.151 24 H 0.058 0.942 25 H 0.072 0.928 26 H 0.062 0.938 27 H 0.079 0.921 28 H 0.088 0.912 29 H 0.080 0.920 30 H 0.114 0.886 31 H 0.117 0.883 32 H 0.093 0.907 33 H 0.076 0.924 34 H 0.100 0.900 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.080 0.920 41 H 0.084 0.916 42 H 0.078 0.922 43 H 0.078 0.922 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -16.186 7.057 7.876 19.335 hybrid contribution -0.396 0.140 -0.967 1.054 sum -16.583 7.197 6.909 19.353 Atomic orbital electron populations 1.21915 0.97469 0.99656 1.01573 1.22093 0.93604 0.99025 1.02217 1.20986 0.95962 0.88788 0.80761 0.93485 1.20821 0.88028 1.51160 0.95652 0.89763 1.24906 0.94946 0.93742 0.98590 1.69862 1.09521 1.47931 1.24625 0.86968 0.81275 0.79826 0.82463 1.19644 1.20789 1.18376 1.86653 1.34490 1.62383 1.43102 1.23461 0.80580 0.76756 0.89925 1.90565 1.55054 1.58500 1.36822 1.21567 0.98437 1.00644 0.94928 1.19918 0.95010 0.98214 0.95920 1.21515 0.97767 0.97711 0.98424 1.21234 0.96470 0.97911 0.99348 1.21944 0.99923 0.98619 0.95006 1.21337 1.01695 0.97172 0.95359 1.21294 0.96908 0.96766 1.00295 1.20541 0.96653 1.00595 0.97267 0.94228 0.92794 0.93791 0.92052 0.91198 0.92021 0.88563 0.88344 0.90659 0.92396 0.89971 0.92180 0.92559 0.92751 0.92632 0.92809 0.92045 0.91592 0.92161 0.92190 0.91961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.90 8.57 37.16 0.32 -2.58 16 2 C -0.13 -2.91 5.63 -26.73 -0.15 -3.06 16 3 C 0.19 4.69 1.90 -27.88 -0.05 4.63 16 4 H 0.05 1.23 4.31 -51.93 -0.22 1.00 16 5 C -0.52 -14.78 9.25 -34.44 -0.32 -15.10 16 6 H 0.08 2.59 8.06 -52.49 -0.42 2.17 16 7 C 0.08 2.36 5.47 -17.82 -0.10 2.26 16 8 N -0.88 -26.35 13.96 55.43 0.77 -25.57 16 9 Si 0.87 21.54 26.99 -169.99 -4.59 16.95 16 10 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.26 -6.27 6.82 56.52 0.39 -5.89 16 13 O -0.35 -8.00 9.81 -39.25 -0.39 -8.38 16 14 C 0.45 8.67 5.94 36.00 0.21 8.88 16 15 O -0.52 -10.83 11.09 -18.75 -0.21 -11.03 16 16 C -0.12 -1.64 5.22 -27.89 -0.15 -1.79 16 17 C -0.07 -0.89 1.39 -93.49 -0.13 -1.02 16 18 C -0.12 -1.56 4.62 -27.35 -0.13 -1.69 16 19 C -0.11 -1.35 5.31 -27.44 -0.15 -1.49 16 20 C -0.12 -1.16 5.85 -25.62 -0.15 -1.31 16 21 C -0.12 -1.06 5.31 -27.44 -0.15 -1.21 16 22 C -0.12 -1.04 5.61 -27.34 -0.15 -1.19 16 23 C -0.11 -1.11 4.44 -29.60 -0.13 -1.24 16 24 H 0.04 0.66 8.14 -51.92 -0.42 0.24 16 25 H 0.05 1.10 7.83 -51.93 -0.41 0.69 16 26 H 0.04 0.83 6.04 -51.93 -0.31 0.52 16 27 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 28 H 0.07 1.57 8.14 -51.93 -0.42 1.14 16 29 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 30 H 0.10 1.16 8.07 -51.93 -0.42 0.74 16 31 H 0.10 1.27 8.14 -51.93 -0.42 0.84 16 32 H 0.08 1.02 7.31 -51.93 -0.38 0.64 16 33 H 0.06 0.71 6.98 -51.93 -0.36 0.35 16 34 H 0.08 1.37 5.61 -51.93 -0.29 1.08 16 35 H 0.06 0.74 6.63 -51.93 -0.34 0.39 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.05 0.53 8.14 -51.92 -0.42 0.11 16 39 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.06 0.57 6.63 -51.93 -0.34 0.22 16 41 H 0.07 0.63 6.98 -51.93 -0.36 0.27 16 42 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.06 0.54 8.06 -51.93 -0.42 0.12 16 44 H 0.06 0.59 7.46 -51.93 -0.39 0.20 16 LS Contribution 328.96 15.07 4.96 4.96 Total: -1.00 -30.09 328.96 -8.30 -38.39 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -7.63 Total: 0.59 kcal Atomic # 6 Polarization: -14.68 SS G_CDS: -1.22 Total: -15.90 kcal Atomic # 7 Polarization: -26.35 SS G_CDS: 0.77 Total: -25.57 kcal Atomic # 8 Polarization: -18.82 SS G_CDS: -0.59 Total: -19.41 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.59 Total: 16.95 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.09 -8.30 -38.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188065602.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.674 kcal (2) G-P(sol) polarization free energy of solvation -30.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds