Wall clock time and date at job start Mon Mar 30 2020 06:55:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.46856 * 2 1 4 4 H 1.08996 * 109.47072 * 305.58819 * 3 2 1 5 5 C 1.50696 * 109.47072 * 185.58410 * 3 2 1 6 6 H 1.08000 * 120.00802 * 274.99224 * 5 3 2 7 7 C 1.37884 * 119.99457 * 94.99759 * 5 3 2 8 8 N 1.31516 * 119.99443 * 184.83654 * 7 5 3 9 9 Si 1.86794 * 120.00024 * 4.84037 * 7 5 3 10 10 H 1.48498 * 109.47316 * 84.86637 * 9 7 5 11 11 H 1.48504 * 109.47080 * 204.86445 * 9 7 5 12 12 H 1.48494 * 109.47509 * 324.86463 * 9 7 5 13 13 O 1.45206 * 109.46875 * 65.58871 * 3 2 1 14 14 C 1.34226 * 117.00002 * 269.99817 * 13 3 2 15 15 O 1.20830 * 120.00030 * 0.02562 * 14 13 3 16 16 C 1.50697 * 120.00233 * 179.97438 * 14 13 3 17 17 C 1.52997 * 109.47374 * 179.97438 * 16 14 13 18 18 C 1.54242 * 108.89993 * 297.88704 * 17 16 14 19 19 C 1.50468 * 108.52815 * 159.25974 * 18 17 16 20 20 C 1.54066 * 112.49939 * 94.15115 * 19 18 17 21 21 C 1.54062 * 112.81786 * 318.28744 * 20 19 18 22 22 C 1.50476 * 112.49633 * 318.28131 * 21 20 19 23 23 C 1.45542 * 108.89809 * 175.00082 * 17 16 14 24 24 H 1.09008 * 109.46229 * 179.97438 * 1 2 3 25 25 H 1.08992 * 109.47285 * 60.00088 * 1 2 3 26 26 H 1.08996 * 109.47174 * 299.99636 * 1 2 3 27 27 H 1.09001 * 109.47416 * 119.99768 * 2 1 3 28 28 H 1.09004 * 109.47448 * 240.00396 * 2 1 3 29 29 H 0.97004 * 119.99626 * 179.97438 * 8 7 5 30 30 H 1.08997 * 109.47428 * 300.00864 * 16 14 13 31 31 H 1.09001 * 109.46619 * 60.00659 * 16 14 13 32 32 H 1.09001 * 108.87386 * 56.40045 * 17 16 14 33 33 H 1.08995 * 109.62785 * 278.97558 * 18 17 16 34 34 H 1.09001 * 109.62570 * 39.55512 * 18 17 16 35 35 H 1.09003 * 108.87878 * 333.37697 * 19 18 17 36 36 H 1.09004 * 108.88273 * 214.93511 * 19 18 17 37 37 H 1.09004 * 108.81855 * 197.42645 * 20 19 18 38 38 H 1.09008 * 108.72855 * 79.08739 * 20 19 18 39 39 H 1.08999 * 108.87947 * 197.50235 * 21 20 19 40 40 H 1.09003 * 108.87921 * 79.05872 * 21 20 19 41 41 H 1.08996 * 109.62714 * 334.44350 * 22 21 20 42 42 H 1.08995 * 109.63330 * 213.85925 * 22 21 20 43 43 H 1.08995 * 108.89875 * 303.44966 * 23 17 16 44 44 H 1.09007 * 108.89465 * 62.03517 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5972 1.9844 -0.8357 5 6 3.5406 1.4449 -0.1383 6 1 4.1638 1.3341 0.7368 7 6 4.1180 1.5885 -1.3821 8 7 5.4230 1.4954 -1.5159 9 14 3.0467 1.9153 -2.8770 10 1 2.7807 3.3722 -2.9864 11 1 3.7471 1.4469 -4.0999 12 1 1.7607 1.1868 -2.7334 13 8 1.6678 2.0874 1.2466 14 6 0.4849 2.7211 1.2755 15 8 -0.2167 2.7360 0.2919 16 6 0.0312 3.4129 2.5351 17 6 -1.3393 4.0515 2.3009 18 6 -1.2116 5.1157 1.1918 19 6 -2.5770 5.3684 0.6121 20 6 -3.2888 6.5612 1.2784 21 6 -3.1060 6.5878 2.8079 22 6 -3.2297 5.2215 3.4263 23 6 -1.8184 4.6126 3.5555 24 1 -0.3632 -1.0278 -0.0005 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 5.8292 1.5960 -2.3910 30 1 -0.0398 2.6855 3.3438 31 1 0.7507 4.1862 2.8041 32 1 -2.0356 3.2808 1.9702 33 1 -0.8166 6.0395 1.6145 34 1 -0.5438 4.7522 0.4107 35 1 -3.1872 4.4749 0.7445 36 1 -2.4757 5.5690 -0.4545 37 1 -4.3538 6.5059 1.0526 38 1 -2.8890 7.4853 0.8605 39 1 -3.8624 7.2413 3.2422 40 1 -2.1199 6.9912 3.0382 41 1 -3.8458 4.5861 2.7901 42 1 -3.6836 5.3062 4.4136 43 1 -1.8415 3.8249 4.3085 44 1 -1.1281 5.3910 3.8805 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188065602.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:36 Heat of formation + Delta-G solvation = -142.433668 kcal Electronic energy + Delta-G solvation = -21785.187478 eV Core-core repulsion = 18700.421843 eV Total energy + Delta-G solvation = -3084.765635 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.62958 -39.86571 -37.58637 -35.33249 -34.63246 -33.90150 -32.91672 -30.09941 -29.17270 -25.71988 -25.18314 -24.47354 -22.51813 -21.35907 -20.94815 -20.13609 -19.34142 -18.35673 -17.44472 -17.20134 -16.59218 -16.16070 -15.69534 -15.46345 -15.08353 -14.86595 -14.39746 -14.14197 -14.02898 -13.79509 -13.70486 -13.43161 -13.33652 -13.02410 -12.97255 -12.92144 -12.62439 -12.45438 -11.99160 -11.88263 -11.68300 -11.47152 -11.43796 -11.35362 -11.24661 -11.17666 -11.13424 -10.97220 -10.87929 -10.68740 -8.48403 -6.57152 1.22593 1.26177 1.36862 1.45440 2.10250 2.17847 2.90119 3.64417 3.71961 3.85802 4.04195 4.17992 4.22535 4.23692 4.25902 4.34237 4.40640 4.45829 4.52812 4.57572 4.60450 4.66391 4.75761 4.87156 4.98429 5.00268 5.07691 5.08961 5.12434 5.17558 5.22883 5.33315 5.35421 5.36516 5.41237 5.43869 5.47824 5.54148 5.59928 5.65797 5.79662 6.23074 6.51324 7.02087 7.15426 8.67278 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.026677 B = 0.004863 C = 0.004641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.359150 B = 5756.738803 C = 6032.311436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.130 4.130 3 C 0.191 3.809 4 H 0.036 0.964 5 C -0.533 4.533 6 H 0.046 0.954 7 C 0.036 3.964 8 N -0.924 5.924 9 Si 0.927 3.073 10 H -0.271 1.271 11 H -0.267 1.267 12 H -0.250 1.250 13 O -0.367 6.367 14 C 0.442 3.558 15 O -0.534 6.534 16 C -0.111 4.111 17 C -0.062 4.062 18 C -0.117 4.117 19 C -0.110 4.110 20 C -0.114 4.114 21 C -0.118 4.118 22 C -0.113 4.113 23 C -0.112 4.112 24 H 0.070 0.930 25 H 0.042 0.958 26 H 0.045 0.955 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.275 0.725 30 H 0.122 0.878 31 H 0.112 0.888 32 H 0.063 0.937 33 H 0.068 0.932 34 H 0.044 0.956 35 H 0.055 0.945 36 H 0.042 0.958 37 H 0.062 0.938 38 H 0.056 0.944 39 H 0.068 0.932 40 H 0.060 0.940 41 H 0.059 0.941 42 H 0.078 0.922 43 H 0.074 0.926 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.629 7.664 9.302 22.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.168 4.168 3 C 0.138 3.862 4 H 0.053 0.947 5 C -0.570 4.570 6 H 0.064 0.936 7 C -0.165 4.165 8 N -0.562 5.562 9 Si 0.750 3.250 10 H -0.196 1.196 11 H -0.192 1.192 12 H -0.174 1.174 13 O -0.284 6.284 14 C 0.287 3.713 15 O -0.426 6.426 16 C -0.149 4.149 17 C -0.080 4.080 18 C -0.154 4.154 19 C -0.148 4.148 20 C -0.151 4.151 21 C -0.155 4.155 22 C -0.150 4.150 23 C -0.150 4.150 24 H 0.089 0.911 25 H 0.061 0.939 26 H 0.064 0.936 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.140 0.860 31 H 0.131 0.869 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.063 0.937 35 H 0.073 0.927 36 H 0.061 0.939 37 H 0.081 0.919 38 H 0.075 0.925 39 H 0.087 0.913 40 H 0.079 0.921 41 H 0.077 0.923 42 H 0.096 0.904 43 H 0.093 0.907 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -18.638 7.640 8.863 22.007 hybrid contribution 0.372 -0.015 -1.197 1.253 sum -18.266 7.625 7.666 21.226 Atomic orbital electron populations 1.21793 0.95030 1.01577 1.01069 1.22010 0.95701 0.96954 1.02166 1.20748 0.93660 0.90438 0.81400 0.94663 1.20990 0.89960 1.51433 0.94633 0.93609 1.25632 0.96057 0.93394 1.01378 1.69966 1.11209 1.49295 1.25757 0.86042 0.79985 0.79661 0.79317 1.19607 1.19183 1.17412 1.86610 1.36755 1.63267 1.41741 1.24510 0.79146 0.76038 0.91604 1.90559 1.55155 1.58843 1.37997 1.21767 0.99404 1.01107 0.92574 1.19886 0.93734 0.97480 0.96912 1.21467 0.97731 0.98390 0.97857 1.21201 0.95940 0.98861 0.98809 1.21913 1.00064 0.97363 0.95801 1.21350 1.02197 0.97590 0.94397 1.21291 0.96207 0.96390 1.01158 1.20522 0.97346 1.01287 0.95816 0.91066 0.93919 0.93617 0.91700 0.91719 0.91508 0.85975 0.86939 0.91839 0.91362 0.93743 0.92673 0.93896 0.91879 0.92468 0.91319 0.92127 0.92259 0.90385 0.90741 0.91104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.11 8.57 71.98 0.62 -4.49 16 2 C -0.13 -5.71 5.63 30.60 0.17 -5.54 16 3 C 0.19 9.62 1.90 29.85 0.06 9.68 16 4 H 0.04 1.85 4.31 -2.39 -0.01 1.84 16 5 C -0.53 -31.28 9.25 25.60 0.24 -31.05 16 6 H 0.05 2.96 8.06 -2.91 -0.02 2.94 16 7 C 0.04 2.11 5.47 84.66 0.46 2.57 16 8 N -0.92 -56.52 13.96 21.45 0.30 -56.22 16 9 Si 0.93 44.79 26.99 68.60 1.85 46.65 16 10 H -0.27 -12.98 7.11 99.48 0.71 -12.28 16 11 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 12 H -0.25 -11.63 6.82 99.48 0.68 -10.95 16 13 O -0.37 -16.84 9.81 -51.38 -0.50 -17.34 16 14 C 0.44 16.82 5.94 71.24 0.42 17.24 16 15 O -0.53 -22.23 11.09 21.95 0.24 -21.98 16 16 C -0.11 -2.88 5.22 29.85 0.16 -2.73 16 17 C -0.06 -1.41 1.39 -12.65 -0.02 -1.42 16 18 C -0.12 -3.03 4.62 30.20 0.14 -2.89 16 19 C -0.11 -2.57 5.31 30.14 0.16 -2.41 16 20 C -0.11 -2.02 5.85 31.31 0.18 -1.83 16 21 C -0.12 -1.77 5.31 30.14 0.16 -1.61 16 22 C -0.11 -1.67 5.61 30.20 0.17 -1.50 16 23 C -0.11 -1.84 4.44 28.74 0.13 -1.71 16 24 H 0.07 2.19 8.14 -2.38 -0.02 2.17 16 25 H 0.04 1.67 7.83 -2.39 -0.02 1.65 16 26 H 0.04 1.66 6.04 -2.39 -0.01 1.64 16 27 H 0.06 2.75 8.14 -2.39 -0.02 2.73 16 28 H 0.06 2.86 8.14 -2.38 -0.02 2.84 16 29 H 0.28 15.56 8.31 -92.71 -0.77 14.79 16 30 H 0.12 2.58 8.07 -2.39 -0.02 2.56 16 31 H 0.11 2.65 8.14 -2.39 -0.02 2.64 16 32 H 0.06 1.61 7.31 -2.39 -0.02 1.60 16 33 H 0.07 1.58 6.98 -2.39 -0.02 1.57 16 34 H 0.04 1.49 5.61 -2.39 -0.01 1.48 16 35 H 0.05 1.31 6.63 -2.39 -0.02 1.30 16 36 H 0.04 1.08 8.14 -2.38 -0.02 1.06 16 37 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 38 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 39 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.06 0.93 6.63 -2.39 -0.02 0.91 16 41 H 0.06 0.97 6.98 -2.39 -0.02 0.95 16 42 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 43 H 0.07 1.04 8.06 -2.39 -0.02 1.03 16 44 H 0.07 1.08 7.46 -2.38 -0.02 1.06 16 Total: -1.00 -66.68 328.96 5.86 -60.82 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: 0.93 Total: 15.76 kcal Atomic # 6 Polarization: -30.73 SS G_CDS: 3.05 Total: -27.68 kcal Atomic # 7 Polarization: -56.52 SS G_CDS: 0.30 Total: -56.22 kcal Atomic # 8 Polarization: -39.06 SS G_CDS: -0.26 Total: -39.32 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 1.85 Total: 46.65 kcal Total: -66.68 5.86 -60.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188065602.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.615 kcal (2) G-P(sol) polarization free energy of solvation -66.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds