Wall clock time and date at job start Mon Mar 30 2020 07:20:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46886 * 2 1 4 4 C 1.52997 * 109.47060 * 180.02562 * 3 2 1 5 5 C 1.52992 * 109.47482 * 180.02562 * 4 3 2 6 6 C 1.52997 * 109.47482 * 179.97438 * 5 4 3 7 7 C 1.53005 * 109.47452 * 180.02562 * 6 5 4 8 8 C 1.52997 * 109.47452 * 180.02562 * 7 6 5 9 9 C 1.53000 * 109.47984 * 59.97576 * 8 7 6 10 10 C 1.53086 * 109.48363 * 179.97438 * 8 7 6 11 11 C 1.53183 * 109.16169 * 62.37185 * 10 8 7 12 12 C 1.53174 * 109.03371 * 56.98235 * 11 10 8 13 13 C 1.53086 * 109.16487 * 303.01896 * 12 11 10 14 14 H 1.09004 * 109.48174 * 297.61525 * 13 12 11 15 15 C 1.50701 * 109.48049 * 177.59247 * 13 12 11 16 16 H 1.08000 * 120.00526 * 359.97438 * 15 13 12 17 17 C 1.37884 * 120.00086 * 180.02562 * 15 13 12 18 18 N 1.31515 * 119.99644 * 359.97438 * 17 15 13 19 19 Si 1.86791 * 120.00030 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47424 * 59.99816 * 19 17 15 21 21 H 1.48507 * 109.47288 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47501 * 299.99612 * 19 17 15 23 23 O 1.42904 * 109.48085 * 299.94533 * 8 7 6 24 24 H 1.09001 * 109.47109 * 299.99380 * 1 2 3 25 25 H 1.09002 * 109.47508 * 59.99571 * 1 2 3 26 26 H 1.09000 * 109.47437 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46652 * 240.00345 * 2 1 3 28 28 H 1.08992 * 109.47514 * 120.00434 * 2 1 3 29 29 H 1.09002 * 109.47398 * 300.00496 * 3 2 1 30 30 H 1.09001 * 109.47194 * 60.00677 * 3 2 1 31 31 H 1.09002 * 109.47153 * 300.00319 * 4 3 2 32 32 H 1.08998 * 109.47533 * 59.99948 * 4 3 2 33 33 H 1.09002 * 109.47103 * 300.00247 * 5 4 3 34 34 H 1.09001 * 109.47066 * 60.00169 * 5 4 3 35 35 H 1.09002 * 109.47153 * 300.00216 * 6 5 4 36 36 H 1.09001 * 109.47289 * 60.00300 * 6 5 4 37 37 H 1.09002 * 109.46935 * 300.00125 * 7 6 5 38 38 H 1.09001 * 109.46812 * 59.99783 * 7 6 5 39 39 H 1.09001 * 109.47321 * 59.99774 * 9 8 7 40 40 H 1.08999 * 109.47464 * 180.02562 * 9 8 7 41 41 H 1.09001 * 109.47411 * 300.00040 * 9 8 7 42 42 H 1.08997 * 109.52541 * 182.27829 * 10 8 7 43 43 H 1.09000 * 109.52305 * 302.40910 * 10 8 7 44 44 H 1.09001 * 109.54112 * 176.84575 * 11 10 8 45 45 H 1.09002 * 109.54419 * 297.11515 * 11 10 8 46 46 H 1.09006 * 109.52493 * 62.92554 * 12 11 10 47 47 H 1.08996 * 109.52221 * 183.10772 * 12 11 10 48 48 H 0.97005 * 119.99704 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 6 4.0799 2.8850 0.0000 6 6 5.6099 2.8850 0.0000 7 6 6.1200 4.3276 0.0013 8 6 7.6499 4.3276 0.0006 9 6 8.1597 3.6072 -1.2492 10 6 8.1605 5.7708 0.0013 11 6 7.6961 6.4678 1.2839 12 6 8.1974 5.6734 2.4937 13 6 7.6855 4.2339 2.3968 14 1 6.5959 4.2326 2.4288 15 6 8.2231 3.4304 3.5528 16 1 8.8660 3.8987 4.2835 17 6 7.8953 2.0968 3.6772 18 7 7.1130 1.5263 2.7872 19 14 8.5612 1.1011 5.1104 20 1 8.1023 1.7039 6.3876 21 1 8.0646 -0.2953 5.0162 22 1 10.0455 1.1029 5.0673 23 8 8.1270 3.6539 1.1671 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.6765 1.9564 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 3.9337 0.9286 0.8891 32 1 3.9330 0.9289 -0.8908 33 1 3.7162 3.3994 -0.8895 34 1 3.7170 3.3983 0.8905 35 1 5.9733 2.3708 0.8897 36 1 5.9733 2.3716 -0.8902 37 1 5.7566 4.8422 -0.8882 38 1 5.7566 4.8406 0.8917 39 1 7.7960 4.1215 -2.1388 40 1 9.2496 3.6069 -1.2493 41 1 7.7964 2.5795 -1.2498 42 1 9.2497 5.7719 -0.0400 43 1 7.7625 6.2984 -0.8655 44 1 8.1030 7.4785 1.3174 45 1 6.6071 6.5109 1.3017 46 1 9.2874 5.6725 2.5028 47 1 7.8251 6.1315 3.4100 48 1 6.8826 0.5881 2.8745 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310544547.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:51 Heat of formation + Delta-G solvation = -101.780194 kcal Electronic energy + Delta-G solvation = -22087.010500 eV Core-core repulsion = 19139.840827 eV Total energy + Delta-G solvation = -2947.169673 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.214 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -38.96256 -36.26101 -34.06885 -32.97672 -32.33888 -31.46198 -29.38296 -27.34674 -25.85148 -25.04226 -22.70794 -21.86099 -20.79382 -20.53097 -20.08402 -17.89406 -16.48268 -15.70689 -15.09108 -14.68447 -14.26008 -14.20937 -14.14430 -13.64987 -13.48118 -13.04347 -12.96758 -12.53461 -12.06686 -11.93789 -11.80811 -11.60582 -11.57901 -11.25809 -11.12975 -10.91208 -10.85170 -10.77385 -10.65998 -10.59706 -10.34427 -10.27146 -10.24294 -10.06049 -9.96839 -9.63971 -9.37290 -9.31089 -8.70818 -8.37824 -7.68499 -5.95710 -4.06600 3.34823 3.39131 3.42289 4.45550 4.89532 5.03836 5.04527 5.21171 5.43222 5.46689 5.48739 5.60251 5.65887 5.69619 5.75332 5.80269 5.86430 5.87287 5.97112 6.05698 6.08606 6.13781 6.21044 6.24102 6.26863 6.35579 6.38545 6.41031 6.46102 6.52131 6.55722 6.58155 6.67354 6.73095 6.78290 6.82777 6.92249 6.97966 6.99277 7.08009 7.25298 7.62264 7.67132 8.01320 8.38027 8.86110 9.24935 9.62985 11.10343 Molecular weight = 268.21amu Principal moments of inertia in cm(-1) A = 0.012644 B = 0.006163 C = 0.004571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2213.920329 B = 4542.223867 C = 6123.933046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.119 4.119 4 C -0.117 4.117 5 C -0.111 4.111 6 C -0.133 4.133 7 C -0.130 4.130 8 C 0.108 3.892 9 C -0.133 4.133 10 C -0.138 4.138 11 C -0.121 4.121 12 C -0.145 4.145 13 C 0.219 3.781 14 H 0.020 0.980 15 C -0.527 4.527 16 H 0.060 0.940 17 C 0.082 3.918 18 N -0.855 5.855 19 Si 0.889 3.111 20 H -0.278 1.278 21 H -0.287 1.287 22 H -0.277 1.277 23 O -0.344 6.344 24 H 0.052 0.948 25 H 0.051 0.949 26 H 0.050 0.950 27 H 0.058 0.942 28 H 0.062 0.938 29 H 0.054 0.946 30 H 0.058 0.942 31 H 0.068 0.932 32 H 0.054 0.946 33 H 0.042 0.958 34 H 0.053 0.947 35 H 0.124 0.876 36 H 0.046 0.954 37 H 0.042 0.958 38 H 0.062 0.938 39 H 0.050 0.950 40 H 0.051 0.949 41 H 0.063 0.937 42 H 0.059 0.941 43 H 0.051 0.949 44 H 0.045 0.955 45 H 0.056 0.944 46 H 0.053 0.947 47 H 0.053 0.947 48 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.382 2.004 -7.394 10.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.164 4.164 3 C -0.156 4.156 4 C -0.155 4.155 5 C -0.149 4.149 6 C -0.170 4.170 7 C -0.168 4.168 8 C 0.067 3.933 9 C -0.190 4.190 10 C -0.176 4.176 11 C -0.158 4.158 12 C -0.183 4.183 13 C 0.163 3.837 14 H 0.037 0.963 15 C -0.564 4.564 16 H 0.078 0.922 17 C -0.124 4.124 18 N -0.492 5.492 19 Si 0.717 3.283 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.203 1.203 23 O -0.263 6.263 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.077 0.923 28 H 0.080 0.920 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.073 0.927 33 H 0.061 0.939 34 H 0.072 0.928 35 H 0.142 0.858 36 H 0.064 0.936 37 H 0.060 0.940 38 H 0.081 0.919 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.082 0.918 42 H 0.078 0.922 43 H 0.070 0.930 44 H 0.064 0.936 45 H 0.075 0.925 46 H 0.072 0.928 47 H 0.072 0.928 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -7.358 1.671 -7.455 10.607 hybrid contribution 0.199 -0.201 0.672 0.729 sum -7.159 1.471 -6.783 9.971 Atomic orbital electron populations 1.21782 0.96406 1.01158 1.01555 1.21549 0.95289 0.97549 1.01985 1.21632 0.96483 0.96068 1.01439 1.21571 0.94008 0.97725 1.02197 1.21527 0.97313 0.95768 1.00270 1.21839 0.93131 0.96848 1.05226 1.22042 0.96530 0.97858 1.00374 1.21189 0.92197 0.90471 0.89439 1.21725 1.00771 1.01081 0.95442 1.22152 1.00788 0.97508 0.97156 1.21643 1.00275 0.97916 0.95999 1.22269 1.00653 0.99496 0.95889 1.19669 0.94366 0.86999 0.82628 0.96289 1.20978 1.32625 0.95729 1.07087 0.92220 1.24979 0.94237 0.97674 0.95516 1.69850 1.33900 1.11679 1.33725 0.86736 0.79528 0.79153 0.82931 1.20334 1.21282 1.20265 1.88381 1.72371 1.53584 1.11980 0.92874 0.93034 0.93131 0.92300 0.91960 0.92679 0.92286 0.91351 0.92718 0.93884 0.92782 0.85753 0.93567 0.93967 0.91915 0.93135 0.93011 0.91801 0.92182 0.92983 0.93591 0.92546 0.92775 0.92810 0.93090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.91 37.16 0.37 -1.14 16 2 C -0.13 -1.47 5.93 -26.73 -0.16 -1.63 16 3 C -0.12 -1.53 5.21 -26.73 -0.14 -1.67 16 4 C -0.12 -1.81 5.21 -26.74 -0.14 -1.94 16 5 C -0.11 -1.85 5.21 -26.74 -0.14 -1.99 16 6 C -0.13 -2.59 4.72 -26.73 -0.13 -2.72 16 7 C -0.13 -2.48 3.57 -26.73 -0.10 -2.57 16 8 C 0.11 2.16 0.79 -90.58 -0.07 2.09 16 9 C -0.13 -2.38 8.49 37.16 0.32 -2.07 16 10 C -0.14 -2.48 4.92 -26.59 -0.13 -2.61 16 11 C -0.12 -2.20 5.72 -26.55 -0.15 -2.35 16 12 C -0.15 -3.12 5.36 -26.60 -0.14 -3.27 16 13 C 0.22 5.51 2.17 -27.84 -0.06 5.45 16 14 H 0.02 0.52 6.34 -51.93 -0.33 0.19 16 15 C -0.53 -14.60 8.79 -34.44 -0.30 -14.90 16 16 H 0.06 1.63 7.74 -52.49 -0.41 1.23 16 17 C 0.08 2.24 5.40 -17.82 -0.10 2.15 16 18 N -0.86 -23.70 11.26 55.43 0.62 -23.08 16 19 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 O -0.34 -8.58 8.60 -35.23 -0.30 -8.89 16 24 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.12 2.93 6.04 -51.93 -0.31 2.61 16 36 H 0.05 0.87 6.43 -51.93 -0.33 0.53 16 37 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.06 1.27 4.98 -51.93 -0.26 1.01 16 39 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.06 1.20 6.43 -51.93 -0.33 0.86 16 42 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 43 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 45 H 0.06 1.01 6.62 -51.93 -0.34 0.66 16 46 H 0.05 1.19 8.14 -51.93 -0.42 0.76 16 47 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 48 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 359.72 15.07 5.42 5.42 Total: -1.00 -27.60 359.72 -9.84 -37.43 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -9.49 Total: 2.15 kcal Atomic # 6 Polarization: -28.11 SS G_CDS: -1.07 Total: -29.18 kcal Atomic # 7 Polarization: -23.70 SS G_CDS: 0.62 Total: -23.08 kcal Atomic # 8 Polarization: -8.58 SS G_CDS: -0.30 Total: -8.89 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -27.60 -9.84 -37.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310544547.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.345 kcal (2) G-P(sol) polarization free energy of solvation -27.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds