Wall clock time and date at job start Mon Mar 30 2020 07:16:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 115.54867 * 2 1 4 4 C 1.52999 * 117.50101 * 214.33387 * 2 1 3 5 5 C 1.52996 * 117.50050 * 145.67246 * 2 1 3 6 6 H 1.09004 * 117.49890 * 359.97438 * 5 2 1 7 7 C 1.53008 * 117.50032 * 215.00485 * 5 2 1 8 8 N 1.46490 * 109.47410 * 174.99929 * 7 5 2 9 9 C 1.34777 * 120.00123 * 179.97438 * 8 7 5 10 10 O 1.21585 * 119.99774 * 0.02562 * 9 8 7 11 11 N 1.34778 * 119.99892 * 179.97438 * 9 8 7 12 12 C 1.46504 * 119.99981 * 179.97438 * 11 9 8 13 13 C 1.52997 * 109.47501 * 180.02562 * 12 11 9 14 14 C 1.52993 * 109.47245 * 300.00704 * 13 12 11 15 15 C 1.53005 * 109.46632 * 60.00269 * 13 12 11 16 16 C 1.52992 * 109.47110 * 180.02562 * 13 12 11 17 17 C 1.50709 * 109.46979 * 180.02562 * 16 13 12 18 18 H 1.08001 * 119.99664 * 359.97438 * 17 16 13 19 19 C 1.37871 * 119.99751 * 180.02562 * 17 16 13 20 20 N 1.31523 * 119.99445 * 179.97438 * 19 17 16 21 21 Si 1.86799 * 120.00493 * 359.97438 * 19 17 16 22 22 H 1.48505 * 109.46714 * 90.00268 * 21 19 17 23 23 H 1.48501 * 109.47319 * 209.99871 * 21 19 17 24 24 H 1.48496 * 109.46927 * 330.00312 * 21 19 17 25 25 H 1.09002 * 109.47153 * 274.41543 * 1 2 3 26 26 H 1.09001 * 109.46832 * 154.41734 * 1 2 3 27 27 H 1.09004 * 109.47261 * 34.41715 * 1 2 3 28 28 H 1.08998 * 117.49862 * 359.97438 * 4 2 1 29 29 H 1.09000 * 117.50295 * 145.02180 * 4 2 1 30 30 H 1.09006 * 109.46715 * 294.99699 * 7 5 2 31 31 H 1.09000 * 109.46797 * 54.99388 * 7 5 2 32 32 H 0.97001 * 119.99875 * 359.97438 * 8 7 5 33 33 H 0.97000 * 120.00476 * 0.02562 * 11 9 8 34 34 H 1.09001 * 109.47220 * 300.01180 * 12 11 9 35 35 H 1.09001 * 109.46856 * 60.00121 * 12 11 9 36 36 H 1.09003 * 109.47394 * 59.99299 * 14 13 12 37 37 H 1.08992 * 109.47477 * 179.97438 * 14 13 12 38 38 H 1.09002 * 109.47173 * 299.99552 * 14 13 12 39 39 H 1.08997 * 109.47285 * 59.99959 * 15 13 12 40 40 H 1.09006 * 109.46946 * 180.02562 * 15 13 12 41 41 H 1.09003 * 109.47014 * 300.00093 * 15 13 12 42 42 H 1.09000 * 109.47630 * 299.99997 * 16 13 12 43 43 H 1.09000 * 109.47407 * 60.00816 * 16 13 12 44 44 H 0.97004 * 119.99305 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2365 -1.1207 -0.7654 5 6 2.2364 -1.1207 0.7653 6 1 1.6112 -1.8579 1.2692 7 6 3.5487 -0.7753 1.4722 8 7 4.0083 -1.9337 2.2422 9 6 5.1523 -1.8609 2.9510 10 8 5.8027 -0.8336 2.9517 11 7 5.5748 -2.9265 3.6598 12 6 6.8187 -2.8476 4.4299 13 6 7.0671 -4.1820 5.1358 14 6 5.9014 -4.4847 6.0793 15 6 7.1823 -5.2964 4.0937 16 6 8.3657 -4.0993 5.9404 17 6 8.6108 -5.4141 6.6352 18 1 7.9100 -6.2271 6.5151 19 6 9.7289 -5.5785 7.4248 20 7 9.9425 -6.7257 8.0316 21 14 10.9405 -4.1721 7.6331 22 1 10.5429 -3.3450 8.8006 23 1 12.3023 -4.7207 7.8560 24 1 10.9395 -3.3325 6.4083 25 1 -0.3633 0.0791 1.0246 26 1 -0.3633 -0.9269 -0.4438 27 1 -0.3634 0.8478 -0.5809 28 1 1.6113 -1.8582 -1.2687 29 1 3.1716 -0.8747 -1.2686 30 1 4.3021 -0.5101 0.7303 31 1 3.3883 0.0676 2.1445 32 1 3.4892 -2.7531 2.2419 33 1 5.0558 -3.7459 3.6596 34 1 7.6492 -2.6323 3.7576 35 1 6.7368 -2.0533 5.1719 36 1 4.9760 -4.5434 5.5063 37 1 6.0782 -5.4356 6.5818 38 1 5.8193 -3.6908 6.8217 39 1 8.0127 -5.0808 3.4214 40 1 7.3589 -6.2473 4.5965 41 1 6.2569 -5.3551 3.5207 42 1 9.1964 -3.8835 5.2685 43 1 8.2832 -3.3056 6.6829 44 1 10.7294 -6.8415 8.5869 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000351064279.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:15 Heat of formation + Delta-G solvation = -51.408024 kcal Electronic energy + Delta-G solvation = -20366.887339 eV Core-core repulsion = 17318.361624 eV Total energy + Delta-G solvation = -3048.525715 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.15496 -39.22449 -38.57083 -35.33875 -35.15212 -33.89888 -30.17096 -29.58439 -27.97805 -27.97008 -26.53540 -24.26270 -22.14773 -22.04226 -21.25125 -20.01683 -18.97172 -18.85224 -17.42609 -16.76166 -16.35285 -16.06806 -15.61071 -15.38961 -15.29383 -14.97148 -14.79267 -14.27108 -14.17058 -14.13354 -13.92483 -13.72100 -13.05084 -12.91936 -12.83310 -12.59306 -12.32195 -12.29046 -12.22017 -12.14798 -11.76879 -11.51449 -11.47822 -11.17332 -11.00399 -10.90334 -10.74868 -10.69672 -10.31129 -9.69811 -8.21768 -6.21580 1.36399 1.39228 1.49455 1.72277 2.17353 2.39778 2.80858 3.13706 3.35817 3.68460 3.91647 3.94155 4.04186 4.08320 4.18027 4.26929 4.47278 4.59228 4.65811 4.73356 4.76090 4.80268 4.94233 4.97018 4.97259 4.99183 5.03950 5.11118 5.21708 5.24911 5.31334 5.38408 5.42070 5.45007 5.51450 5.55322 5.58817 5.71147 5.77345 6.04283 6.39011 6.85097 7.13321 7.41103 7.60666 8.93719 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.047066 B = 0.002958 C = 0.002878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.766801 B = 9464.535281 C = 9727.562205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.146 4.146 3 H 0.103 0.897 4 C -0.169 4.169 5 C -0.165 4.165 6 H 0.123 0.877 7 C 0.172 3.828 8 N -0.730 5.730 9 C 0.697 3.303 10 O -0.642 6.642 11 N -0.725 5.725 12 C 0.158 3.842 13 C -0.057 4.057 14 C -0.123 4.123 15 C -0.123 4.123 16 C -0.005 4.005 17 C -0.500 4.500 18 H 0.053 0.947 19 C 0.005 3.995 20 N -0.951 5.951 21 Si 0.934 3.066 22 H -0.272 1.272 23 H -0.289 1.289 24 H -0.252 1.252 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.066 0.934 28 H 0.108 0.892 29 H 0.092 0.908 30 H 0.053 0.947 31 H 0.056 0.944 32 H 0.412 0.588 33 H 0.409 0.591 34 H 0.050 0.950 35 H 0.051 0.949 36 H 0.069 0.931 37 H 0.045 0.955 38 H 0.043 0.957 39 H 0.043 0.957 40 H 0.045 0.955 41 H 0.069 0.931 42 H 0.014 0.986 43 H 0.013 0.987 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.615 10.286 -16.834 27.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.165 4.165 3 H 0.121 0.879 4 C -0.206 4.206 5 C -0.183 4.183 6 H 0.141 0.859 7 C 0.048 3.952 8 N -0.387 5.387 9 C 0.397 3.603 10 O -0.524 6.524 11 N -0.382 5.382 12 C 0.033 3.967 13 C -0.057 4.057 14 C -0.180 4.180 15 C -0.180 4.180 16 C -0.043 4.043 17 C -0.538 4.538 18 H 0.071 0.929 19 C -0.192 4.192 20 N -0.593 5.593 21 Si 0.759 3.241 22 H -0.197 1.197 23 H -0.215 1.215 24 H -0.176 1.176 25 H 0.080 0.920 26 H 0.081 0.919 27 H 0.085 0.915 28 H 0.126 0.874 29 H 0.110 0.890 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.249 0.751 33 H 0.247 0.753 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.087 0.913 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.062 0.938 40 H 0.065 0.935 41 H 0.087 0.913 42 H 0.033 0.967 43 H 0.031 0.969 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -18.917 11.133 -16.732 27.600 hybrid contribution 0.752 -0.425 0.643 1.077 sum -18.165 10.707 -16.089 26.523 Atomic orbital electron populations 1.21384 0.91595 1.02659 1.02278 1.22475 0.96157 0.94493 1.03356 0.87879 1.23330 1.02807 1.01526 0.92959 1.22489 0.97388 1.03825 0.94631 0.85868 1.20673 0.93865 0.87195 0.93499 1.44924 1.24061 1.18037 1.51645 1.16156 0.81619 0.83481 0.79066 1.90885 1.59264 1.32050 1.70222 1.45013 1.26742 1.15122 1.51289 1.21115 0.84922 0.97145 0.93488 1.20545 0.96378 0.93340 0.95452 1.21695 0.96444 1.01347 0.98534 1.21696 1.00961 0.98054 0.97300 1.19579 0.93991 0.95692 0.95004 1.21362 1.07128 0.98572 1.26741 0.92858 1.25832 0.99989 0.97701 0.95632 1.70045 1.29304 1.26253 1.33667 0.85903 0.78376 0.80257 0.79583 1.19738 1.21474 1.17608 0.92000 0.91865 0.91450 0.87413 0.88967 0.92838 0.92619 0.75129 0.75309 0.93140 0.93045 0.91258 0.93562 0.93744 0.93787 0.93546 0.91256 0.96723 0.96854 0.92886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.04 10.19 71.98 0.73 -0.30 16 2 C -0.15 -1.61 6.12 -10.80 -0.07 -1.68 16 3 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 4 C -0.17 -1.83 9.83 30.62 0.30 -1.53 16 5 C -0.16 -1.99 5.57 -10.77 -0.06 -2.05 16 6 H 0.12 1.18 8.04 -2.38 -0.02 1.16 16 7 C 0.17 3.17 5.96 86.38 0.51 3.68 16 8 N -0.73 -14.24 5.56 -478.54 -2.66 -16.90 16 9 C 0.70 19.95 8.57 179.05 1.53 21.49 16 10 O -0.64 -24.66 16.34 -3.98 -0.07 -24.73 16 11 N -0.73 -18.94 4.96 -478.53 -2.37 -21.32 16 12 C 0.16 5.19 4.56 86.38 0.39 5.58 16 13 C -0.06 -2.01 0.54 -52.19 -0.03 -2.04 16 14 C -0.12 -4.07 8.05 71.98 0.58 -3.49 16 15 C -0.12 -4.07 8.05 71.98 0.58 -3.50 16 16 C 0.00 -0.21 3.11 29.85 0.09 -0.12 16 17 C -0.50 -27.17 8.21 25.60 0.21 -26.96 16 18 H 0.05 3.11 5.92 -2.91 -0.02 3.09 16 19 C 0.00 0.27 5.47 84.65 0.46 0.73 16 20 N -0.95 -58.75 13.96 21.45 0.30 -58.45 16 21 Si 0.93 44.73 27.47 68.60 1.88 46.61 16 22 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 23 H -0.29 -13.71 7.11 99.48 0.71 -13.01 16 24 H -0.25 -11.45 6.54 99.48 0.65 -10.80 16 25 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 26 H 0.06 0.46 7.90 -2.39 -0.02 0.44 16 27 H 0.07 0.50 8.14 -2.38 -0.02 0.48 16 28 H 0.11 0.92 8.05 -2.39 -0.02 0.90 16 29 H 0.09 1.09 8.03 -2.39 -0.02 1.07 16 30 H 0.05 1.13 7.88 -2.38 -0.02 1.11 16 31 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.41 5.27 8.41 -92.71 -0.78 4.49 16 33 H 0.41 8.22 6.18 -92.71 -0.57 7.64 16 34 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.07 1.74 6.86 -2.39 -0.02 1.72 16 37 H 0.05 1.78 6.62 -2.39 -0.02 1.76 16 38 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.05 1.78 6.62 -2.38 -0.02 1.77 16 41 H 0.07 1.74 6.86 -2.39 -0.02 1.73 16 42 H 0.01 0.67 7.20 -2.39 -0.02 0.65 16 43 H 0.01 0.60 7.57 -2.39 -0.02 0.58 16 44 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 Total: -1.00 -70.17 348.84 1.90 -68.27 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: -0.43 Total: 16.69 kcal Atomic # 6 Polarization: -15.43 SS G_CDS: 5.25 Total: -10.18 kcal Atomic # 7 Polarization: -91.93 SS G_CDS: -4.74 Total: -96.67 kcal Atomic # 8 Polarization: -24.66 SS G_CDS: -0.07 Total: -24.73 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 1.88 Total: 46.61 kcal Total: -70.17 1.90 -68.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351064279.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.862 kcal (2) G-P(sol) polarization free energy of solvation -70.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds