Wall clock time and date at job start Mon Mar 30 2020 07:09:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52992 * 109.47365 * 2 1 4 4 C 1.53004 * 109.47615 * 59.99846 * 3 2 1 5 5 N 1.46504 * 109.47382 * 179.97438 * 3 2 1 6 6 C 1.34777 * 119.99548 * 63.90129 * 5 3 2 7 7 O 1.21580 * 120.00407 * 5.20796 * 6 5 3 8 8 N 1.34780 * 119.99558 * 185.21105 * 6 5 3 9 9 C 1.46503 * 119.99837 * 179.97438 * 8 6 5 10 10 C 1.53005 * 109.47102 * 179.97438 * 9 8 6 11 11 C 1.52993 * 109.47204 * 180.02562 * 10 9 8 12 12 C 1.50699 * 109.47319 * 179.97438 * 11 10 9 13 13 H 1.08001 * 119.99940 * 0.02562 * 12 11 10 14 14 C 1.37872 * 120.00075 * 179.97438 * 12 11 10 15 15 N 1.31518 * 119.99998 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00040 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47159 * 59.99871 * 16 14 12 18 18 H 1.48494 * 109.47334 * 180.02562 * 16 14 12 19 19 H 1.48505 * 109.47102 * 300.00097 * 16 14 12 20 20 C 1.53005 * 109.47084 * 299.99938 * 3 2 1 21 21 C 1.53003 * 117.52059 * 108.86694 * 20 3 2 22 22 C 1.52996 * 117.50042 * 177.49785 * 20 3 2 23 23 H 1.08996 * 109.46892 * 60.00115 * 1 2 3 24 24 H 1.09000 * 109.47216 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47062 * 300.00399 * 1 2 3 26 26 H 1.08999 * 109.47153 * 239.99134 * 2 1 3 27 27 H 1.09006 * 109.46712 * 119.99856 * 2 1 3 28 28 H 1.09003 * 109.46717 * 300.00353 * 4 3 2 29 29 H 1.08996 * 109.46958 * 59.99920 * 4 3 2 30 30 H 1.09000 * 109.47229 * 180.02562 * 4 3 2 31 31 H 0.96998 * 119.99793 * 243.89992 * 5 3 2 32 32 H 0.97003 * 120.00185 * 0.02562 * 8 6 5 33 33 H 1.08998 * 109.47372 * 300.00394 * 9 8 6 34 34 H 1.09006 * 109.46557 * 60.00361 * 9 8 6 35 35 H 1.09000 * 109.46794 * 300.00776 * 10 9 8 36 36 H 1.09004 * 109.46875 * 60.00262 * 10 9 8 37 37 H 1.09005 * 109.47368 * 300.00327 * 11 10 9 38 38 H 1.09004 * 109.47253 * 60.00173 * 11 10 9 39 39 H 0.97006 * 119.99663 * 180.02562 * 15 14 12 40 40 H 1.09002 * 115.54626 * 323.16312 * 20 3 2 41 41 H 1.08998 * 117.49511 * 214.97497 * 21 20 3 42 42 H 1.09003 * 117.49267 * 359.97438 * 21 20 3 43 43 H 1.09000 * 117.50264 * 359.97404 * 22 20 3 44 44 H 1.09000 * 117.49904 * 144.99401 * 22 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.5301 2.1638 1.2492 5 7 3.5051 1.4424 0.0006 6 6 4.1793 0.9288 -1.0473 7 8 3.5756 0.5522 -2.0331 8 7 5.5229 0.8325 -1.0022 9 6 6.2558 0.2736 -2.1410 10 6 7.7549 0.2784 -1.8347 11 6 8.5204 -0.3046 -3.0241 12 6 9.9969 -0.2994 -2.7227 13 1 10.3536 0.0814 -1.7771 14 6 10.8923 -0.7815 -3.6537 15 7 10.4578 -1.2456 -4.8050 16 14 12.7224 -0.7757 -3.2797 17 1 12.9834 -1.5984 -2.0713 18 1 13.4654 -1.3414 -4.4343 19 1 13.1735 0.6182 -3.0365 20 6 1.5301 2.1637 -1.2493 21 6 0.4529 3.2333 -1.0579 22 6 1.8854 3.6436 -1.4051 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8933 -0.5140 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 0.4401 2.1638 1.2492 29 1 1.8934 1.6500 2.1392 30 1 1.8931 3.1916 1.2489 31 1 3.9897 1.8121 0.7551 32 1 6.0046 1.1325 -0.2155 33 1 5.9244 -0.7492 -2.3198 34 1 6.0647 0.8779 -3.0279 35 1 8.0859 1.3014 -1.6561 36 1 7.9464 -0.3255 -0.9476 37 1 8.1893 -1.3276 -3.2032 38 1 8.3288 0.2996 -3.9109 39 1 11.0878 -1.5852 -5.4599 40 1 1.4837 1.5591 -2.1551 41 1 -0.3021 3.3324 -1.8378 42 1 0.1071 3.4230 -0.0417 43 1 2.4821 4.1037 -0.6175 44 1 2.0728 4.0128 -2.4135 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596266373.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:16 Heat of formation + Delta-G solvation = -49.106250 kcal Electronic energy + Delta-G solvation = -20752.061366 eV Core-core repulsion = 17703.635463 eV Total energy + Delta-G solvation = -3048.425903 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.50330 -39.38185 -36.87578 -35.57372 -35.15435 -33.81775 -32.59162 -29.83820 -28.38775 -26.06398 -24.82657 -23.32773 -23.15329 -22.28026 -22.00258 -19.74835 -19.14179 -18.50861 -17.33957 -16.84291 -16.61764 -16.50593 -15.91963 -15.74951 -15.47756 -15.11300 -14.35023 -14.22985 -14.00391 -13.73462 -13.50721 -13.29601 -12.99003 -12.73410 -12.66315 -12.54607 -12.39096 -12.34806 -12.19420 -11.97349 -11.79116 -11.66450 -11.48781 -11.23589 -11.18848 -11.00872 -10.71434 -10.54897 -10.21447 -9.69433 -8.19343 -6.31253 1.41394 1.44809 1.52641 1.76809 2.26645 2.42082 2.97484 3.14171 3.43399 3.65291 3.90521 4.03765 4.18240 4.18712 4.23989 4.27187 4.43664 4.54729 4.56569 4.61377 4.67882 4.81854 4.93299 4.96308 5.00079 5.05654 5.07545 5.16048 5.17047 5.26349 5.28502 5.35306 5.38961 5.47833 5.50377 5.61029 5.70910 5.74609 5.84074 6.11989 6.22826 6.85968 7.23064 7.38383 7.72579 8.92723 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.040509 B = 0.002944 C = 0.002926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.030663 B = 9507.242026 C = 9568.639306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.130 4.130 3 C 0.222 3.778 4 C -0.155 4.155 5 N -0.726 5.726 6 C 0.699 3.301 7 O -0.628 6.628 8 N -0.735 5.735 9 C 0.153 3.847 10 C -0.099 4.099 11 C 0.024 3.976 12 C -0.542 4.542 13 H 0.067 0.933 14 C -0.004 4.004 15 N -0.936 5.936 16 Si 0.968 3.032 17 H -0.265 1.265 18 H -0.286 1.286 19 H -0.265 1.265 20 C -0.158 4.158 21 C -0.159 4.159 22 C -0.181 4.181 23 H 0.052 0.948 24 H 0.052 0.948 25 H 0.079 0.921 26 H 0.038 0.962 27 H 0.066 0.934 28 H 0.095 0.905 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.409 0.591 32 H 0.409 0.591 33 H 0.043 0.957 34 H 0.042 0.958 35 H 0.067 0.933 36 H 0.067 0.933 37 H -0.009 1.009 38 H -0.009 1.009 39 H 0.263 0.737 40 H 0.074 0.926 41 H 0.093 0.907 42 H 0.124 0.876 43 H 0.101 0.899 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.322 9.360 16.560 27.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.168 4.168 3 C 0.137 3.863 4 C -0.212 4.212 5 N -0.382 5.382 6 C 0.399 3.601 7 O -0.509 6.509 8 N -0.391 5.391 9 C 0.028 3.972 10 C -0.137 4.137 11 C -0.013 4.013 12 C -0.580 4.580 13 H 0.085 0.915 14 C -0.202 4.202 15 N -0.576 5.576 16 Si 0.792 3.208 17 H -0.190 1.190 18 H -0.212 1.212 19 H -0.190 1.190 20 C -0.177 4.177 21 C -0.196 4.196 22 C -0.219 4.219 23 H 0.071 0.929 24 H 0.072 0.928 25 H 0.098 0.902 26 H 0.057 0.943 27 H 0.084 0.916 28 H 0.113 0.887 29 H 0.095 0.905 30 H 0.091 0.909 31 H 0.245 0.755 32 H 0.245 0.755 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.009 0.991 38 H 0.009 0.991 39 H 0.072 0.928 40 H 0.093 0.907 41 H 0.111 0.889 42 H 0.142 0.858 43 H 0.119 0.881 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -20.810 8.930 15.522 27.454 hybrid contribution 1.624 -0.166 -0.255 1.653 sum -19.186 8.764 15.267 26.038 Atomic orbital electron populations 1.21755 0.93549 1.01911 1.02768 1.21854 0.97688 0.95969 1.01334 1.19729 0.77295 0.94712 0.94610 1.22243 1.03356 1.00682 0.94895 1.45225 1.06856 1.65404 1.20738 1.16184 0.81720 0.78621 0.83594 1.90860 1.68560 1.57103 1.34340 1.45081 1.04948 1.68022 1.21055 1.20992 0.91375 0.97054 0.87773 1.21578 0.91333 1.01424 0.99407 1.18932 0.94491 0.94530 0.93390 1.21660 0.92852 1.41121 1.02398 0.91475 1.26046 1.04508 0.94810 0.94795 1.70117 1.36551 1.42801 1.08147 0.85452 0.78562 0.78943 0.77793 1.18956 1.21152 1.18976 1.22443 1.04757 0.91179 0.99326 1.23258 0.91185 1.01024 1.04124 1.22836 0.99723 0.97230 1.02062 0.92871 0.92841 0.90243 0.94303 0.91574 0.88652 0.90468 0.90869 0.75508 0.75476 0.93877 0.93942 0.91442 0.91418 0.99059 0.99085 0.92798 0.90734 0.88872 0.85810 0.88086 0.90872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 9.32 71.98 0.67 -1.56 16 2 C -0.13 -2.72 4.97 30.59 0.15 -2.56 16 3 C 0.22 4.11 0.65 3.60 0.00 4.11 16 4 C -0.15 -1.55 6.86 71.98 0.49 -1.05 16 5 N -0.73 -14.95 5.03 -438.00 -2.20 -17.15 16 6 C 0.70 21.27 7.97 179.05 1.43 22.70 16 7 O -0.63 -24.88 13.17 -3.97 -0.05 -24.93 16 8 N -0.74 -21.30 5.56 -478.52 -2.66 -23.96 16 9 C 0.15 5.69 5.67 86.38 0.49 6.18 16 10 C -0.10 -3.94 5.27 30.59 0.16 -3.77 16 11 C 0.02 1.29 4.97 29.85 0.15 1.44 16 12 C -0.54 -30.66 9.11 25.60 0.23 -30.43 16 13 H 0.07 3.54 7.74 -2.91 -0.02 3.52 16 14 C 0.00 -0.23 5.46 84.65 0.46 0.23 16 15 N -0.94 -57.94 13.29 21.45 0.28 -57.65 16 16 Si 0.97 44.11 29.54 68.60 2.03 46.14 16 17 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 18 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 19 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 20 C -0.16 -3.47 2.81 -10.79 -0.03 -3.50 16 21 C -0.16 -2.41 9.49 30.60 0.29 -2.12 16 22 C -0.18 -3.59 9.80 30.59 0.30 -3.29 16 23 H 0.05 0.91 7.11 -2.39 -0.02 0.89 16 24 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 25 H 0.08 0.84 6.43 -2.38 -0.02 0.82 16 26 H 0.04 1.15 6.64 -2.39 -0.02 1.14 16 27 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 28 H 0.09 0.71 5.14 -2.39 -0.01 0.70 16 29 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.07 0.62 7.02 -2.39 -0.02 0.61 16 31 H 0.41 5.66 8.50 -92.71 -0.79 4.87 16 32 H 0.41 8.92 8.49 -92.71 -0.79 8.14 16 33 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.04 1.73 8.14 -2.38 -0.02 1.71 16 35 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 36 H 0.07 2.50 8.14 -2.38 -0.02 2.48 16 37 H -0.01 -0.52 8.14 -2.38 -0.02 -0.54 16 38 H -0.01 -0.54 8.14 -2.38 -0.02 -0.56 16 39 H 0.26 15.34 8.31 -92.70 -0.77 14.57 16 40 H 0.07 2.29 7.19 -2.39 -0.02 2.27 16 41 H 0.09 1.37 8.14 -2.39 -0.02 1.36 16 42 H 0.12 1.23 5.87 -2.39 -0.01 1.21 16 43 H 0.10 1.73 7.45 -2.39 -0.02 1.72 16 44 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -73.12 345.72 1.61 -71.51 By element: Atomic # 1 Polarization: 20.26 SS G_CDS: -0.59 Total: 19.68 kcal Atomic # 6 Polarization: -18.43 SS G_CDS: 4.80 Total: -13.63 kcal Atomic # 7 Polarization: -94.18 SS G_CDS: -4.58 Total: -98.76 kcal Atomic # 8 Polarization: -24.88 SS G_CDS: -0.05 Total: -24.93 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Total: -73.12 1.61 -71.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596266373.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.402 kcal (2) G-P(sol) polarization free energy of solvation -73.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds