Wall clock time and date at job start Mon Mar 30 2020 06:42:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47288 * 2 1 4 4 C 1.53003 * 109.46674 * 119.99740 * 2 1 3 5 5 C 1.53004 * 109.46798 * 175.00194 * 4 2 1 6 6 H 1.08993 * 110.63844 * 52.13875 * 5 4 2 7 7 C 1.54736 * 110.58057 * 289.27077 * 5 4 2 8 8 O 1.44520 * 104.84708 * 217.66974 * 7 5 4 9 9 C 1.44672 * 105.45774 * 39.81719 * 8 7 5 10 10 C 1.53446 * 104.58020 * 320.49883 * 9 8 7 11 11 C 1.53914 * 110.79813 * 263.51020 * 10 9 8 12 12 C 1.55498 * 100.78953 * 273.23536 * 11 10 9 13 13 C 1.54471 * 102.36054 * 326.95908 * 12 11 10 14 14 C 1.53000 * 109.83494 * 261.83550 * 13 12 11 15 15 C 1.50703 * 109.91686 * 140.89168 * 13 12 11 16 16 H 1.07997 * 119.99604 * 0.39583 * 15 13 12 17 17 C 1.37878 * 119.99916 * 180.40031 * 15 13 12 18 18 N 1.31513 * 120.00153 * 359.97438 * 17 15 13 19 19 Si 1.86803 * 119.99839 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.46816 * 89.99596 * 19 17 15 21 21 H 1.48493 * 109.46921 * 209.99450 * 19 17 15 22 22 H 1.48496 * 109.47118 * 329.99950 * 19 17 15 23 23 O 1.42409 * 111.81598 * 144.79591 * 10 9 8 24 24 H 1.09001 * 109.47542 * 300.00776 * 1 2 3 25 25 H 1.09006 * 109.47335 * 60.00460 * 1 2 3 26 26 H 1.09000 * 109.47318 * 180.02562 * 1 2 3 27 27 H 1.08992 * 109.47509 * 239.99446 * 2 1 3 28 28 H 1.08998 * 109.47450 * 179.97438 * 3 2 1 29 29 H 1.08997 * 109.47009 * 299.99671 * 3 2 1 30 30 H 1.09005 * 109.47250 * 59.99641 * 3 2 1 31 31 H 1.08994 * 109.47452 * 54.99964 * 4 2 1 32 32 H 1.09006 * 109.46865 * 294.99924 * 4 2 1 33 33 H 1.09002 * 110.36494 * 336.50670 * 7 5 4 34 34 H 1.08989 * 110.36436 * 98.71317 * 7 5 4 35 35 H 1.09005 * 110.41586 * 201.71773 * 9 8 7 36 36 H 1.09004 * 110.41249 * 79.27339 * 9 8 7 37 37 H 1.09002 * 111.15026 * 31.11635 * 11 10 9 38 38 H 1.09001 * 111.14985 * 155.35414 * 11 10 9 39 39 H 1.09004 * 110.82629 * 208.74016 * 12 11 10 40 40 H 1.09000 * 110.99819 * 85.25516 * 12 11 10 41 41 H 1.08997 * 109.47308 * 179.55164 * 14 13 12 42 42 H 1.08999 * 109.47597 * 299.55848 * 14 13 12 43 43 H 1.09005 * 109.46912 * 59.55612 * 14 13 12 44 44 H 0.96995 * 120.00206 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0398 -0.7212 1.2493 5 6 3.5647 -0.8310 1.1881 6 1 4.0130 0.1450 1.0025 7 6 3.9939 -1.8427 0.0988 8 8 5.1364 -2.5278 0.6592 9 6 4.8159 -2.7340 2.0549 10 6 4.1142 -1.4392 2.4855 11 6 5.1081 -0.4779 3.1616 12 6 5.0406 -0.9768 4.6329 13 6 3.5714 -1.4368 4.7590 14 6 2.7384 -0.3379 5.4219 15 6 3.4973 -2.6992 5.5787 16 1 4.3996 -3.1355 5.9809 17 6 2.2776 -3.2970 5.8151 18 7 1.1788 -2.7654 5.3257 19 14 2.1858 -4.8622 6.8307 20 1 2.0128 -4.5130 8.2637 21 1 1.0317 -5.6793 6.3774 22 1 3.4400 -5.6383 6.6583 23 8 3.0808 -1.6873 3.4335 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5138 -0.8901 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8898 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6052 -1.7197 1.2953 32 1 1.7514 -0.1582 2.1370 33 1 3.1885 -2.5495 -0.1009 34 1 4.2740 -1.3197 -0.8154 35 1 5.7259 -2.8848 2.6357 36 1 4.1455 -3.5859 2.1691 37 1 6.1110 -0.5967 2.7516 38 1 4.7721 0.5559 3.0810 39 1 5.2534 -0.1643 5.3277 40 1 5.7232 -1.8112 4.7940 41 1 1.7018 -0.6653 5.5007 42 1 3.1319 -0.1344 6.4178 43 1 2.7881 0.5691 4.8194 44 1 0.3207 -3.1857 5.4923 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000716353784.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:18 Heat of formation + Delta-G solvation = -125.025325 kcal Electronic energy + Delta-G solvation = -22855.017727 eV Core-core repulsion = 19771.006974 eV Total energy + Delta-G solvation = -3084.010752 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.55185 -38.82495 -37.27602 -34.94173 -32.90134 -32.64546 -31.10142 -28.21690 -27.95171 -27.31751 -26.66390 -24.90813 -22.78753 -21.52366 -20.78160 -20.18372 -18.41672 -17.35143 -17.27268 -16.57466 -16.36338 -15.73656 -15.49216 -15.20754 -15.08202 -14.61316 -14.15581 -13.96921 -13.91952 -13.54276 -13.25544 -13.09070 -13.06352 -12.83437 -12.72695 -12.62268 -12.34337 -12.33150 -12.26610 -12.07985 -11.91121 -11.71698 -11.46882 -11.27338 -11.14827 -10.95539 -10.86758 -10.67467 -10.50991 -9.66849 -7.99890 -6.21812 1.39045 1.41633 1.49570 2.43601 2.93992 3.18805 3.49745 3.65818 3.89523 3.92050 4.04428 4.13503 4.18829 4.23473 4.37293 4.46269 4.52975 4.63976 4.69872 4.78256 4.82029 4.86426 4.89147 4.92601 4.96223 5.00536 5.03185 5.09619 5.12688 5.16101 5.19865 5.24710 5.31027 5.34602 5.45395 5.53954 5.60368 5.67034 5.70206 5.88580 6.14679 6.37862 6.70973 7.19403 7.53653 8.99575 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.018429 B = 0.007210 C = 0.006502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.011593 B = 3882.504851 C = 4305.609800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.094 4.094 3 C -0.143 4.143 4 C -0.076 4.076 5 C -0.109 4.109 6 H 0.103 0.897 7 C 0.050 3.950 8 O -0.389 6.389 9 C 0.044 3.956 10 C 0.067 3.933 11 C -0.129 4.129 12 C -0.139 4.139 13 C 0.215 3.785 14 C -0.129 4.129 15 C -0.549 4.549 16 H 0.050 0.950 17 C 0.038 3.962 18 N -0.883 5.883 19 Si 0.940 3.060 20 H -0.274 1.274 21 H -0.288 1.288 22 H -0.272 1.272 23 O -0.351 6.351 24 H 0.043 0.957 25 H 0.071 0.929 26 H 0.044 0.956 27 H 0.078 0.922 28 H 0.061 0.939 29 H 0.068 0.932 30 H 0.044 0.956 31 H 0.035 0.965 32 H 0.045 0.955 33 H 0.051 0.949 34 H 0.117 0.883 35 H 0.091 0.909 36 H 0.040 0.960 37 H 0.088 0.912 38 H 0.080 0.920 39 H 0.073 0.927 40 H 0.058 0.942 41 H 0.058 0.942 42 H 0.037 0.963 43 H 0.027 0.973 44 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.396 7.089 -10.315 12.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.113 4.113 3 C -0.201 4.201 4 C -0.114 4.114 5 C -0.127 4.127 6 H 0.121 0.879 7 C -0.026 4.026 8 O -0.308 6.308 9 C -0.033 4.033 10 C 0.025 3.975 11 C -0.166 4.166 12 C -0.176 4.176 13 C 0.177 3.823 14 C -0.186 4.186 15 C -0.587 4.587 16 H 0.069 0.931 17 C -0.165 4.165 18 N -0.520 5.520 19 Si 0.766 3.234 20 H -0.200 1.200 21 H -0.213 1.213 22 H -0.197 1.197 23 O -0.270 6.270 24 H 0.062 0.938 25 H 0.090 0.910 26 H 0.063 0.937 27 H 0.096 0.904 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.063 0.937 31 H 0.054 0.946 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.135 0.865 35 H 0.109 0.891 36 H 0.058 0.942 37 H 0.106 0.894 38 H 0.098 0.902 39 H 0.092 0.908 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.056 0.944 43 H 0.046 0.954 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 3.182 6.939 -10.472 12.959 hybrid contribution -0.397 -1.162 1.227 1.736 sum 2.785 5.777 -9.245 11.252 Atomic orbital electron populations 1.21807 0.95366 1.01270 1.01754 1.21163 0.95765 0.96926 0.97412 1.21853 1.01311 0.95108 1.01784 1.21184 0.93139 0.99472 0.97615 1.22569 0.97235 0.99803 0.93141 0.87868 1.23674 0.88222 0.93523 0.97189 1.89059 1.40112 1.79001 1.22646 1.23592 0.99812 0.97756 0.82166 1.22791 0.89352 0.93389 0.91934 1.23082 0.99602 0.98970 0.94993 1.23186 0.97802 1.00140 0.96518 1.19783 0.88850 0.92595 0.81028 1.21822 1.02989 0.96062 0.97771 1.21601 0.92751 1.11230 1.33102 0.93133 1.25618 0.95752 0.99370 0.95751 1.70084 0.97994 1.39786 1.44173 0.85869 0.77449 0.80740 0.79354 1.19970 1.21349 1.19721 1.88623 1.34027 1.88583 1.15764 0.93807 0.91028 0.93723 0.90357 0.92044 0.91326 0.93682 0.94626 0.93586 0.93028 0.86494 0.89112 0.94185 0.89355 0.90187 0.90840 0.92292 0.92292 0.94354 0.95439 0.93493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.53 9.19 71.98 0.66 -2.87 16 2 C -0.09 -2.33 2.86 -10.79 -0.03 -2.36 16 3 C -0.14 -3.03 8.97 71.98 0.65 -2.38 16 4 C -0.08 -2.55 3.21 30.60 0.10 -2.45 16 5 C -0.11 -3.43 2.62 -10.04 -0.03 -3.46 16 6 H 0.10 2.81 5.80 -2.39 -0.01 2.79 16 7 C 0.05 1.47 6.49 72.57 0.47 1.94 16 8 O -0.39 -13.58 11.66 -148.98 -1.74 -15.31 16 9 C 0.04 1.70 6.80 72.13 0.49 2.19 16 10 C 0.07 2.55 1.12 -10.18 -0.01 2.54 16 11 C -0.13 -4.37 5.76 31.76 0.18 -4.19 16 12 C -0.14 -5.48 5.92 31.95 0.19 -5.29 16 13 C 0.21 10.37 0.83 -11.04 -0.01 10.36 16 14 C -0.13 -6.15 8.51 71.98 0.61 -5.54 16 15 C -0.55 -29.77 8.22 25.60 0.21 -29.56 16 16 H 0.05 2.72 7.52 -2.91 -0.02 2.70 16 17 C 0.04 2.08 5.26 84.66 0.45 2.52 16 18 N -0.88 -50.66 10.93 21.45 0.23 -50.42 16 19 Si 0.94 43.75 29.54 68.60 2.03 45.78 16 20 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 21 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 22 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 23 O -0.35 -16.96 7.96 -148.98 -1.19 -18.15 16 24 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 25 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 26 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 27 H 0.08 1.72 7.52 -2.39 -0.02 1.70 16 28 H 0.06 1.21 6.43 -2.39 -0.02 1.20 16 29 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.04 1.04 8.14 -2.38 -0.02 1.02 16 31 H 0.03 1.39 7.95 -2.39 -0.02 1.37 16 32 H 0.05 1.81 7.68 -2.38 -0.02 1.79 16 33 H 0.05 1.57 7.75 -2.39 -0.02 1.55 16 34 H 0.12 2.62 8.14 -2.39 -0.02 2.60 16 35 H 0.09 3.39 7.76 -2.38 -0.02 3.37 16 36 H 0.04 1.76 8.12 -2.38 -0.02 1.74 16 37 H 0.09 2.62 7.96 -2.39 -0.02 2.60 16 38 H 0.08 2.50 7.93 -2.39 -0.02 2.48 16 39 H 0.07 2.66 7.82 -2.39 -0.02 2.64 16 40 H 0.06 2.35 7.66 -2.39 -0.02 2.33 16 41 H 0.06 3.19 6.04 -2.39 -0.01 3.17 16 42 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 43 H 0.03 1.17 8.14 -2.38 -0.02 1.15 16 44 H 0.26 14.15 8.31 -92.71 -0.77 13.38 16 Total: -1.00 -60.83 334.56 4.21 -56.62 By element: Atomic # 1 Polarization: 19.08 SS G_CDS: 0.94 Total: 20.02 kcal Atomic # 6 Polarization: -42.46 SS G_CDS: 3.93 Total: -38.53 kcal Atomic # 7 Polarization: -50.66 SS G_CDS: 0.23 Total: -50.42 kcal Atomic # 8 Polarization: -30.54 SS G_CDS: -2.92 Total: -33.46 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -60.83 4.21 -56.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716353784.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.405 kcal (2) G-P(sol) polarization free energy of solvation -60.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds