Wall clock time and date at job start Mon Mar 30 2020 06:48:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46983 * 2 1 4 4 C 1.50701 * 109.46892 * 240.00474 * 2 1 3 5 5 H 1.08003 * 119.99561 * 239.99925 * 4 2 1 6 6 C 1.37874 * 120.00335 * 59.99933 * 4 2 1 7 7 N 1.31511 * 120.00015 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99790 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47550 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.46870 * 119.99861 * 8 6 4 11 11 H 1.48500 * 109.47251 * 239.99905 * 8 6 4 12 12 C 1.52994 * 109.47208 * 120.00132 * 2 1 3 13 13 O 1.45202 * 109.46919 * 300.00395 * 12 2 1 14 14 C 1.34230 * 116.99836 * 180.02562 * 13 12 2 15 15 O 1.20833 * 119.99930 * 359.97438 * 14 13 12 16 16 C 1.50697 * 120.00262 * 180.27336 * 14 13 12 17 17 C 1.52996 * 109.47491 * 179.72204 * 16 14 13 18 18 C 1.53004 * 109.46959 * 299.99452 * 17 16 14 19 19 C 1.53000 * 109.47166 * 59.99803 * 17 16 14 20 20 C 1.53003 * 109.47301 * 179.97438 * 17 16 14 21 21 C 1.52999 * 117.50050 * 248.74717 * 20 17 16 22 22 C 1.52991 * 117.49999 * 180.08274 * 20 17 16 23 23 H 1.08996 * 109.47459 * 300.00192 * 1 2 3 24 24 H 1.09001 * 109.46957 * 59.99663 * 1 2 3 25 25 H 1.08996 * 109.47234 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.47128 * 180.02562 * 3 2 1 27 27 H 1.09001 * 109.47549 * 299.99975 * 3 2 1 28 28 H 1.09005 * 109.47490 * 60.00171 * 3 2 1 29 29 H 0.97002 * 119.99980 * 180.02562 * 7 6 4 30 30 H 1.08998 * 109.47242 * 179.97438 * 12 2 1 31 31 H 1.09004 * 109.46797 * 59.99640 * 12 2 1 32 32 H 1.09004 * 109.46801 * 299.72165 * 16 14 13 33 33 H 1.09000 * 109.47461 * 59.71633 * 16 14 13 34 34 H 1.09003 * 109.46745 * 60.00057 * 18 17 16 35 35 H 1.09001 * 109.46985 * 179.97438 * 18 17 16 36 36 H 1.08994 * 109.47484 * 300.00468 * 18 17 16 37 37 H 1.08996 * 109.46830 * 60.00033 * 19 17 16 38 38 H 1.09001 * 109.46739 * 180.02562 * 19 17 16 39 39 H 1.09003 * 109.46595 * 299.99976 * 19 17 16 40 40 H 1.09000 * 115.54529 * 34.41737 * 20 17 16 41 41 H 1.08994 * 117.49562 * 359.97438 * 21 20 17 42 42 H 1.08998 * 117.49972 * 145.01826 * 21 20 17 43 43 H 1.09000 * 117.50440 * 214.98229 * 22 20 17 44 44 H 1.09005 * 117.50274 * 0.02562 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9436 0.8303 -2.6034 8 14 2.3225 -1.1194 -4.0080 9 1 3.1474 -2.2863 -3.6039 10 1 1.1677 -1.5865 -4.8165 11 1 3.1472 -0.1856 -4.8161 12 6 2.0400 -0.7212 1.2492 13 8 1.5559 -0.0368 2.4347 14 6 1.9170 -0.5466 3.6228 15 8 2.6142 -1.5324 3.6705 16 6 1.4475 0.1065 4.8971 17 6 1.9905 -0.6700 6.0984 18 6 1.4806 -2.1116 6.0464 19 6 3.5199 -0.6681 6.0578 20 6 1.5142 -0.0065 7.3922 21 6 2.5662 0.6901 8.2576 22 6 1.9561 -0.6376 8.7139 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 3.1300 1.4425 -0.0005 27 1 1.6767 1.9564 -0.8900 28 1 1.6767 1.9564 0.8900 29 1 0.7089 1.1615 -3.4844 30 1 3.1300 -0.7216 1.2489 31 1 1.6766 -1.7489 1.2491 32 1 1.8107 1.1336 4.9341 33 1 0.3579 0.1053 4.9260 34 1 1.8202 -2.5841 5.1247 35 1 1.8678 -2.6650 6.9020 36 1 0.3910 -2.1130 6.0752 37 1 3.8830 0.3589 6.0949 38 1 3.9067 -1.2217 6.9134 39 1 3.8595 -1.1406 5.1361 40 1 0.5195 0.4375 7.3542 41 1 3.5976 0.6753 7.9055 42 1 2.2635 1.5921 8.7893 43 1 1.2523 -0.6085 9.5457 44 1 2.5865 -1.5254 8.6619 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000816021304.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:21 Heat of formation + Delta-G solvation = -80.797563 kcal Electronic energy + Delta-G solvation = -21372.684629 eV Core-core repulsion = 18290.591736 eV Total energy + Delta-G solvation = -3082.092892 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.42655 -38.71652 -36.59320 -34.86064 -33.60074 -31.27807 -28.57328 -27.35526 -25.62121 -25.61025 -25.03538 -23.54216 -22.36997 -20.58620 -18.85263 -18.40213 -17.24706 -16.12157 -15.98774 -15.74315 -15.65075 -14.81221 -14.32771 -13.99411 -13.73911 -13.16267 -13.12542 -12.74727 -12.48914 -11.98051 -11.79918 -11.70540 -11.56803 -11.28280 -11.18921 -11.16027 -11.07043 -10.87248 -10.79351 -10.66647 -10.40821 -10.38233 -10.18184 -9.99242 -9.83343 -9.67136 -9.38597 -9.25116 -8.74055 -8.37789 -6.01806 -4.13331 2.66537 3.25667 3.26714 3.35335 3.40707 3.67267 4.38232 4.53681 4.60898 4.76835 4.90169 5.05262 5.15546 5.24665 5.34341 5.46175 5.53148 5.59523 5.66727 5.71506 5.77694 5.90381 5.97916 6.01896 6.08354 6.09720 6.12794 6.23074 6.45316 6.46877 6.50310 6.78470 6.99327 7.13136 7.14990 7.22146 7.43196 7.63065 7.70554 8.05847 8.16880 8.32326 8.41329 8.87022 9.52291 10.99426 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.045381 B = 0.003659 C = 0.003578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.853233 B = 7650.668539 C = 7824.466173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.069 3.931 3 C -0.129 4.129 4 C -0.511 4.511 5 H 0.057 0.943 6 C 0.068 3.932 7 N -0.882 5.882 8 Si 0.895 3.105 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.284 1.284 12 C 0.085 3.915 13 O -0.350 6.350 14 C 0.454 3.546 15 O -0.514 6.514 16 C -0.105 4.105 17 C -0.018 4.018 18 C -0.153 4.153 19 C -0.159 4.159 20 C -0.142 4.142 21 C -0.185 4.185 22 C -0.177 4.177 23 H 0.016 0.984 24 H 0.084 0.916 25 H 0.022 0.978 26 H 0.022 0.978 27 H 0.084 0.916 28 H 0.016 0.984 29 H 0.260 0.740 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.102 0.898 33 H 0.101 0.899 34 H 0.084 0.916 35 H 0.052 0.948 36 H 0.048 0.952 37 H 0.052 0.948 38 H 0.052 0.948 39 H 0.085 0.915 40 H 0.104 0.896 41 H 0.101 0.899 42 H 0.090 0.910 43 H 0.090 0.910 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.431 -0.022 18.193 18.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.069 3.931 3 C -0.187 4.187 4 C -0.549 4.549 5 H 0.075 0.925 6 C -0.134 4.134 7 N -0.521 5.521 8 Si 0.722 3.278 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.210 1.210 12 C 0.012 3.988 13 O -0.266 6.266 14 C 0.298 3.702 15 O -0.404 6.404 16 C -0.143 4.143 17 C -0.018 4.018 18 C -0.210 4.210 19 C -0.216 4.216 20 C -0.160 4.160 21 C -0.222 4.222 22 C -0.214 4.214 23 H 0.035 0.965 24 H 0.102 0.898 25 H 0.041 0.959 26 H 0.041 0.959 27 H 0.102 0.898 28 H 0.035 0.965 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.120 0.880 33 H 0.119 0.881 34 H 0.102 0.898 35 H 0.071 0.929 36 H 0.067 0.933 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.103 0.897 40 H 0.122 0.878 41 H 0.120 0.880 42 H 0.108 0.892 43 H 0.109 0.891 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 0.555 -0.197 18.001 18.010 hybrid contribution 0.342 -0.522 -0.825 1.034 sum 0.898 -0.719 17.176 17.214 Atomic orbital electron populations 1.21762 0.97358 0.98902 1.00646 1.18243 0.93401 0.93068 0.88412 1.21765 0.98029 0.98228 1.00648 1.20990 1.31849 1.12253 0.89854 0.92482 1.24859 0.94816 0.94915 0.98794 1.69841 1.36433 1.22607 1.23171 0.86494 0.78660 0.79703 0.82895 1.19771 1.20967 1.20960 1.23625 0.98086 0.95713 0.81356 1.86530 1.69047 1.55941 1.15063 1.23539 0.77640 0.82577 0.86425 1.90497 1.36066 1.25937 1.87911 1.21432 1.03027 1.00850 0.89008 1.19815 0.96077 0.95140 0.90766 1.22099 1.00292 0.94963 1.03610 1.22251 0.94060 1.01540 1.03702 1.22319 0.99078 1.03554 0.91077 1.23168 0.99275 0.95958 1.03810 1.22921 1.03937 0.97046 0.97521 0.96459 0.89780 0.95884 0.95888 0.89774 0.96459 0.92974 0.92651 0.92651 0.88013 0.88072 0.89772 0.92933 0.93252 0.92897 0.92935 0.89682 0.87773 0.88048 0.89171 0.89111 0.88797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.12 8.11 37.16 0.30 -2.82 16 2 C 0.07 1.70 0.58 -155.66 -0.09 1.61 16 3 C -0.13 -3.12 8.11 37.16 0.30 -2.82 16 4 C -0.51 -13.72 8.01 -34.44 -0.28 -14.00 16 5 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 6 C 0.07 1.81 5.15 -17.82 -0.09 1.72 16 7 N -0.88 -24.03 9.35 55.43 0.52 -23.51 16 8 Si 0.89 20.87 29.54 -169.99 -5.02 15.84 16 9 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 C 0.08 1.88 4.26 37.15 0.16 2.04 16 13 O -0.35 -6.93 8.88 -39.26 -0.35 -7.28 16 14 C 0.45 7.70 7.37 36.00 0.27 7.96 16 15 O -0.51 -9.52 11.10 -18.76 -0.21 -9.73 16 16 C -0.11 -1.31 4.86 -27.89 -0.14 -1.45 16 17 C -0.02 -0.20 0.62 -154.51 -0.10 -0.30 16 18 C -0.15 -1.84 8.02 37.16 0.30 -1.54 16 19 C -0.16 -1.88 6.77 37.16 0.25 -1.63 16 20 C -0.14 -1.33 5.15 -90.62 -0.47 -1.79 16 21 C -0.19 -1.58 9.57 -26.69 -0.26 -1.84 16 22 C -0.18 -1.50 9.39 -26.70 -0.25 -1.75 16 23 H 0.02 0.37 7.68 -51.93 -0.40 -0.03 16 24 H 0.08 2.20 6.07 -51.93 -0.32 1.88 16 25 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.08 2.20 6.07 -51.93 -0.32 1.89 16 28 H 0.02 0.37 7.68 -51.93 -0.40 -0.03 16 29 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 30 H 0.06 1.24 8.13 -51.93 -0.42 0.82 16 31 H 0.06 1.24 8.13 -51.93 -0.42 0.82 16 32 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.08 1.23 5.52 -51.93 -0.29 0.95 16 35 H 0.05 0.57 7.29 -51.93 -0.38 0.19 16 36 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.05 0.58 6.97 -51.93 -0.36 0.22 16 38 H 0.05 0.56 7.07 -51.93 -0.37 0.19 16 39 H 0.08 1.24 5.52 -51.93 -0.29 0.95 16 40 H 0.10 0.90 8.11 -51.93 -0.42 0.48 16 41 H 0.10 0.88 5.85 -51.93 -0.30 0.58 16 42 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.09 0.81 7.07 -51.93 -0.37 0.45 16 LS Contribution 336.37 15.07 5.07 5.07 Total: -1.00 -27.72 336.37 -7.62 -35.34 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -7.55 Total: 0.87 kcal Atomic # 6 Polarization: -16.51 SS G_CDS: -0.09 Total: -16.60 kcal Atomic # 7 Polarization: -24.03 SS G_CDS: 0.52 Total: -23.51 kcal Atomic # 8 Polarization: -16.45 SS G_CDS: -0.56 Total: -17.01 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -27.72 -7.62 -35.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000816021304.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.458 kcal (2) G-P(sol) polarization free energy of solvation -27.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds