Wall clock time and date at job start Mon Mar 30 2020 06:48:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47109 * 2 1 4 4 C 1.52997 * 109.47582 * 239.99774 * 2 1 3 5 5 C 1.53007 * 109.46718 * 60.00015 * 4 2 1 6 6 O 1.45206 * 109.46794 * 180.02562 * 5 4 2 7 7 C 1.34224 * 116.99797 * 180.02562 * 6 5 4 8 8 O 1.20825 * 120.00347 * 359.97438 * 7 6 5 9 9 C 1.50702 * 120.00024 * 180.02562 * 7 6 5 10 10 C 1.53000 * 109.47300 * 179.97438 * 9 7 6 11 11 C 1.53002 * 109.47157 * 179.97438 * 10 9 7 12 12 C 1.50702 * 109.47113 * 179.97438 * 11 10 9 13 13 H 1.08000 * 119.99945 * 359.97438 * 12 11 10 14 14 C 1.37873 * 119.99699 * 179.97438 * 12 11 10 15 15 N 1.31515 * 119.99496 * 179.97438 * 14 12 11 16 16 Si 1.86797 * 120.00399 * 359.97438 * 14 12 11 17 17 H 1.48505 * 109.46800 * 90.00249 * 16 14 12 18 18 H 1.48501 * 109.47371 * 209.99911 * 16 14 12 19 19 H 1.48499 * 109.47202 * 330.00602 * 16 14 12 20 20 C 1.53003 * 109.47107 * 119.99652 * 2 1 3 21 21 C 1.53001 * 117.51964 * 231.28841 * 20 2 1 22 22 C 1.52999 * 60.00190 * 107.47982 * 21 20 2 23 23 H 1.08996 * 109.47501 * 299.99745 * 1 2 3 24 24 H 1.09004 * 109.47169 * 60.00503 * 1 2 3 25 25 H 1.09005 * 109.46926 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47548 * 179.97438 * 3 2 1 27 27 H 1.08996 * 109.46727 * 300.00157 * 3 2 1 28 28 H 1.09002 * 109.47133 * 59.99615 * 3 2 1 29 29 H 1.09000 * 109.47179 * 179.97438 * 4 2 1 30 30 H 1.08996 * 109.47327 * 300.00426 * 4 2 1 31 31 H 1.09000 * 109.46988 * 299.99741 * 5 4 2 32 32 H 1.08997 * 109.47266 * 60.00511 * 5 4 2 33 33 H 1.09005 * 109.47003 * 299.99643 * 9 7 6 34 34 H 1.09004 * 109.47564 * 59.99226 * 9 7 6 35 35 H 1.09004 * 109.46842 * 299.99446 * 10 9 7 36 36 H 1.08994 * 109.47077 * 59.99534 * 10 9 7 37 37 H 1.09004 * 109.46854 * 299.99515 * 11 10 9 38 38 H 1.08996 * 109.46944 * 59.99693 * 11 10 9 39 39 H 0.97000 * 119.99808 * 179.97438 * 15 14 12 40 40 H 1.09002 * 115.54973 * 85.58625 * 20 2 1 41 41 H 1.09001 * 117.49733 * 214.97413 * 21 20 2 42 42 H 1.08995 * 117.49577 * 359.97438 * 21 20 2 43 43 H 1.09004 * 117.50150 * 252.51496 * 22 21 20 44 44 H 1.09004 * 117.49681 * 107.48417 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 1.5301 0.0000 -2.4984 6 8 2.0137 -0.6849 -3.6840 7 6 1.6534 -0.1746 -4.8720 8 8 0.9567 0.8114 -4.9199 9 6 2.1170 -0.8321 -6.1464 10 6 1.5702 -0.0584 -7.3477 11 6 2.0414 -0.7256 -8.6414 12 6 1.5022 0.0361 -9.8247 13 1 0.8848 0.9086 -9.6695 14 6 1.7971 -0.3808 -11.1054 15 7 1.3261 0.2837 -12.1380 16 14 2.8655 -1.8894 -11.3738 17 1 2.0060 -3.0983 -11.4447 18 1 3.6189 -1.7426 -12.6451 19 1 3.8208 -2.0266 -10.2452 20 6 2.0400 -0.7212 1.2493 21 6 3.0757 0.0040 2.1109 22 6 1.6373 -0.1482 2.6097 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 3.1299 1.4426 0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6766 1.9564 0.8900 29 1 3.1301 -0.7208 -1.2493 30 1 1.6767 -1.7489 -1.2492 31 1 0.4401 -0.0001 -2.4985 32 1 1.8934 1.0277 -2.4985 33 1 3.2066 -0.8325 -6.1794 34 1 1.7522 -1.8587 -6.1791 35 1 0.4806 -0.0584 -7.3144 36 1 1.9346 0.9683 -7.3151 37 1 3.1309 -0.7252 -8.6745 38 1 1.6772 -1.7524 -8.6742 39 1 1.5339 -0.0094 -13.0390 40 1 2.1253 -1.8046 1.1648 41 1 3.8425 -0.6023 2.5932 42 1 3.3942 0.9949 1.7876 43 1 1.0093 0.7428 2.6145 44 1 1.4577 -0.8547 3.4201 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000847736793.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:19 Heat of formation + Delta-G solvation = -96.306859 kcal Electronic energy + Delta-G solvation = -20059.045051 eV Core-core repulsion = 16976.279625 eV Total energy + Delta-G solvation = -3082.765426 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.39164 -39.49440 -36.63963 -34.64248 -34.40672 -32.14415 -29.73326 -28.44101 -27.80153 -25.47906 -23.99799 -22.59235 -21.88694 -20.89594 -19.87441 -18.59949 -17.52326 -16.77345 -16.67400 -16.37353 -15.86539 -15.12770 -14.91481 -14.26094 -14.14759 -13.95548 -13.30941 -13.15648 -12.96198 -12.65664 -12.37886 -12.17975 -12.02723 -11.85945 -11.77956 -11.53446 -11.41839 -11.30854 -11.03214 -10.81126 -10.80948 -10.58192 -10.45222 -10.28537 -10.19512 -9.94678 -9.75354 -9.64904 -9.17526 -8.52346 -6.02070 -4.00375 2.46977 2.78515 3.31713 3.39060 3.41908 3.43500 4.15875 4.37696 4.46324 4.48977 4.64273 4.70938 4.78385 4.92922 4.96103 5.10680 5.15393 5.24652 5.31103 5.31212 5.34589 5.46731 5.49037 5.51328 5.56786 5.61844 5.65348 5.68318 5.76472 5.77010 5.88961 6.00099 6.03175 6.04800 6.47758 6.55423 6.63152 6.86491 7.31570 7.40731 7.79876 8.00426 8.56635 9.03905 9.59603 11.11450 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.053111 B = 0.002560 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.068039 B =10936.396195 C =11180.616051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.030 4.030 3 C -0.153 4.153 4 C -0.106 4.106 5 C 0.061 3.939 6 O -0.364 6.364 7 C 0.459 3.541 8 O -0.507 6.507 9 C -0.115 4.115 10 C -0.092 4.092 11 C -0.014 4.014 12 C -0.520 4.520 13 H 0.073 0.927 14 C 0.064 3.936 15 N -0.903 5.903 16 Si 0.881 3.119 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.265 1.265 20 C -0.141 4.141 21 C -0.185 4.185 22 C -0.179 4.179 23 H 0.058 0.942 24 H 0.060 0.940 25 H 0.058 0.942 26 H 0.062 0.938 27 H 0.061 0.939 28 H 0.058 0.942 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.100 0.900 34 H 0.100 0.900 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.018 0.982 38 H 0.013 0.987 39 H 0.263 0.737 40 H 0.105 0.895 41 H 0.091 0.909 42 H 0.101 0.899 43 H 0.094 0.906 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.692 -3.118 29.622 29.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.030 4.030 3 C -0.210 4.210 4 C -0.143 4.143 5 C -0.013 4.013 6 O -0.282 6.282 7 C 0.303 3.697 8 O -0.394 6.394 9 C -0.152 4.152 10 C -0.130 4.130 11 C -0.051 4.051 12 C -0.558 4.558 13 H 0.091 0.909 14 C -0.136 4.136 15 N -0.542 5.542 16 Si 0.709 3.291 17 H -0.203 1.203 18 H -0.214 1.214 19 H -0.190 1.190 20 C -0.159 4.159 21 C -0.222 4.222 22 C -0.216 4.216 23 H 0.077 0.923 24 H 0.079 0.921 25 H 0.077 0.923 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.119 0.881 34 H 0.119 0.881 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.036 0.964 38 H 0.032 0.968 39 H 0.072 0.928 40 H 0.123 0.877 41 H 0.109 0.891 42 H 0.119 0.881 43 H 0.112 0.888 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 2.469 -2.800 29.445 29.680 hybrid contribution 0.440 -0.687 -0.185 0.836 sum 2.909 -3.486 29.260 29.610 Atomic orbital electron populations 1.21963 0.94043 1.02281 1.02089 1.19978 0.95650 0.94915 0.92429 1.22129 1.01445 0.95264 1.02165 1.21565 1.01900 0.99803 0.91057 1.23179 0.99527 0.96324 0.82274 1.86508 1.70363 1.56174 1.15156 1.24276 0.77323 0.82770 0.85342 1.90653 1.35354 1.25655 1.87707 1.21699 1.03347 1.01499 0.88693 1.21390 1.00887 0.99006 0.91710 1.19601 0.96500 0.96049 0.92981 1.21130 1.32002 1.13467 0.89223 0.90913 1.25051 0.95695 0.96831 0.96068 1.69922 1.45649 1.40242 0.98431 0.86757 0.81174 0.83537 0.77671 1.20301 1.21420 1.18960 1.22295 1.03738 0.98979 0.90901 1.23155 0.92465 1.02638 1.03910 1.22938 0.98225 1.03288 0.97127 0.92339 0.92142 0.92264 0.91919 0.92042 0.92340 0.90595 0.90667 0.91131 0.91155 0.88146 0.88148 0.91852 0.91834 0.96408 0.96845 0.92752 0.87737 0.89086 0.88079 0.88784 0.89008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 7.96 37.16 0.30 -0.78 16 2 C -0.03 -0.22 0.65 -154.51 -0.10 -0.32 16 3 C -0.15 -1.11 6.72 37.16 0.25 -0.86 16 4 C -0.11 -0.92 4.63 -26.73 -0.12 -1.04 16 5 C 0.06 0.69 4.76 37.16 0.18 0.87 16 6 O -0.36 -5.08 10.22 -39.24 -0.40 -5.48 16 7 C 0.46 7.46 7.96 36.01 0.29 7.74 16 8 O -0.51 -9.69 15.73 -18.75 -0.29 -9.98 16 9 C -0.11 -1.82 5.81 -27.88 -0.16 -1.98 16 10 C -0.09 -1.88 4.44 -26.73 -0.12 -2.00 16 11 C -0.01 -0.33 4.04 -27.88 -0.11 -0.44 16 12 C -0.52 -15.08 9.66 -34.44 -0.33 -15.41 16 13 H 0.07 2.29 7.99 -52.49 -0.42 1.87 16 14 C 0.06 1.90 5.47 -17.82 -0.10 1.80 16 15 N -0.90 -28.21 13.96 55.43 0.77 -27.44 16 16 Si 0.88 21.68 27.47 -169.99 -4.67 17.01 16 17 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 18 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 19 H -0.26 -6.17 6.54 56.52 0.37 -5.80 16 20 C -0.14 -0.94 5.15 -90.61 -0.47 -1.41 16 21 C -0.18 -1.14 9.57 -26.73 -0.26 -1.40 16 22 C -0.18 -1.08 9.38 -26.73 -0.25 -1.33 16 23 H 0.06 0.39 7.29 -51.93 -0.38 0.01 16 24 H 0.06 0.49 6.43 -51.93 -0.33 0.15 16 25 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.44 6.97 -51.93 -0.36 0.08 16 27 H 0.06 0.49 6.43 -51.93 -0.33 0.16 16 28 H 0.06 0.38 7.07 -51.93 -0.37 0.01 16 29 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.81 6.42 -51.93 -0.33 0.48 16 32 H 0.07 0.81 6.42 -51.93 -0.33 0.48 16 33 H 0.10 1.42 8.14 -51.93 -0.42 0.99 16 34 H 0.10 1.41 8.14 -51.93 -0.42 0.99 16 35 H 0.06 1.35 8.10 -51.93 -0.42 0.93 16 36 H 0.06 1.35 8.10 -51.93 -0.42 0.93 16 37 H 0.02 0.41 7.20 -51.93 -0.37 0.04 16 38 H 0.01 0.30 7.57 -51.93 -0.39 -0.09 16 39 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 40 H 0.10 0.69 8.11 -51.93 -0.42 0.27 16 41 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 42 H 0.10 0.61 5.85 -51.93 -0.30 0.31 16 43 H 0.09 0.55 7.07 -51.93 -0.37 0.19 16 44 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 LS Contribution 346.67 15.07 5.22 5.22 Total: -1.00 -32.17 346.67 -8.07 -40.24 By element: Atomic # 1 Polarization: 4.68 SS G_CDS: -7.69 Total: -3.01 kcal Atomic # 6 Polarization: -15.54 SS G_CDS: -1.01 Total: -16.55 kcal Atomic # 7 Polarization: -28.21 SS G_CDS: 0.77 Total: -27.44 kcal Atomic # 8 Polarization: -14.77 SS G_CDS: -0.70 Total: -15.46 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.67 Total: 17.01 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.17 -8.07 -40.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847736793.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.067 kcal (2) G-P(sol) polarization free energy of solvation -32.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds