Wall clock time and date at job start Mon Mar 30 2020 06:48:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47109 * 2 1 4 4 C 1.52997 * 109.47582 * 239.99774 * 2 1 3 5 5 C 1.53007 * 109.46718 * 60.00015 * 4 2 1 6 6 O 1.45206 * 109.46794 * 180.02562 * 5 4 2 7 7 C 1.34224 * 116.99797 * 180.02562 * 6 5 4 8 8 O 1.20825 * 120.00347 * 359.97438 * 7 6 5 9 9 C 1.50702 * 120.00024 * 180.02562 * 7 6 5 10 10 C 1.53000 * 109.47300 * 179.97438 * 9 7 6 11 11 C 1.53002 * 109.47157 * 179.97438 * 10 9 7 12 12 C 1.50702 * 109.47113 * 179.97438 * 11 10 9 13 13 H 1.08000 * 119.99945 * 359.97438 * 12 11 10 14 14 C 1.37873 * 119.99699 * 179.97438 * 12 11 10 15 15 N 1.31515 * 119.99496 * 179.97438 * 14 12 11 16 16 Si 1.86797 * 120.00399 * 359.97438 * 14 12 11 17 17 H 1.48505 * 109.46800 * 90.00249 * 16 14 12 18 18 H 1.48501 * 109.47371 * 209.99911 * 16 14 12 19 19 H 1.48499 * 109.47202 * 330.00602 * 16 14 12 20 20 C 1.53003 * 109.47107 * 119.99652 * 2 1 3 21 21 C 1.53001 * 117.51964 * 231.28841 * 20 2 1 22 22 C 1.52999 * 60.00190 * 107.47982 * 21 20 2 23 23 H 1.08996 * 109.47501 * 299.99745 * 1 2 3 24 24 H 1.09004 * 109.47169 * 60.00503 * 1 2 3 25 25 H 1.09005 * 109.46926 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47548 * 179.97438 * 3 2 1 27 27 H 1.08996 * 109.46727 * 300.00157 * 3 2 1 28 28 H 1.09002 * 109.47133 * 59.99615 * 3 2 1 29 29 H 1.09000 * 109.47179 * 179.97438 * 4 2 1 30 30 H 1.08996 * 109.47327 * 300.00426 * 4 2 1 31 31 H 1.09000 * 109.46988 * 299.99741 * 5 4 2 32 32 H 1.08997 * 109.47266 * 60.00511 * 5 4 2 33 33 H 1.09005 * 109.47003 * 299.99643 * 9 7 6 34 34 H 1.09004 * 109.47564 * 59.99226 * 9 7 6 35 35 H 1.09004 * 109.46842 * 299.99446 * 10 9 7 36 36 H 1.08994 * 109.47077 * 59.99534 * 10 9 7 37 37 H 1.09004 * 109.46854 * 299.99515 * 11 10 9 38 38 H 1.08996 * 109.46944 * 59.99693 * 11 10 9 39 39 H 0.97000 * 119.99808 * 179.97438 * 15 14 12 40 40 H 1.09002 * 115.54973 * 85.58625 * 20 2 1 41 41 H 1.09001 * 117.49733 * 214.97413 * 21 20 2 42 42 H 1.08995 * 117.49577 * 359.97438 * 21 20 2 43 43 H 1.09004 * 117.50150 * 252.51496 * 22 21 20 44 44 H 1.09004 * 117.49681 * 107.48417 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 1.5301 0.0000 -2.4984 6 8 2.0137 -0.6849 -3.6840 7 6 1.6534 -0.1746 -4.8720 8 8 0.9567 0.8114 -4.9199 9 6 2.1170 -0.8321 -6.1464 10 6 1.5702 -0.0584 -7.3477 11 6 2.0414 -0.7256 -8.6414 12 6 1.5022 0.0361 -9.8247 13 1 0.8848 0.9086 -9.6695 14 6 1.7971 -0.3808 -11.1054 15 7 1.3261 0.2837 -12.1380 16 14 2.8655 -1.8894 -11.3738 17 1 2.0060 -3.0983 -11.4447 18 1 3.6189 -1.7426 -12.6451 19 1 3.8208 -2.0266 -10.2452 20 6 2.0400 -0.7212 1.2493 21 6 3.0757 0.0040 2.1109 22 6 1.6373 -0.1482 2.6097 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 3.1299 1.4426 0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6766 1.9564 0.8900 29 1 3.1301 -0.7208 -1.2493 30 1 1.6767 -1.7489 -1.2492 31 1 0.4401 -0.0001 -2.4985 32 1 1.8934 1.0277 -2.4985 33 1 3.2066 -0.8325 -6.1794 34 1 1.7522 -1.8587 -6.1791 35 1 0.4806 -0.0584 -7.3144 36 1 1.9346 0.9683 -7.3151 37 1 3.1309 -0.7252 -8.6745 38 1 1.6772 -1.7524 -8.6742 39 1 1.5339 -0.0094 -13.0390 40 1 2.1253 -1.8046 1.1648 41 1 3.8425 -0.6023 2.5932 42 1 3.3942 0.9949 1.7876 43 1 1.0093 0.7428 2.6145 44 1 1.4577 -0.8547 3.4201 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000847736793.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:19 Heat of formation + Delta-G solvation = -113.104052 kcal Electronic energy + Delta-G solvation = -20059.773432 eV Core-core repulsion = 16976.279625 eV Total energy + Delta-G solvation = -3083.493807 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.56833 -40.14684 -37.81108 -36.18672 -35.30504 -34.18000 -30.89886 -29.84759 -28.38105 -26.47491 -25.50230 -23.05820 -22.84478 -22.24704 -21.40927 -19.23210 -18.89981 -18.64871 -17.82659 -17.34099 -16.75178 -16.21795 -16.15573 -15.63328 -15.20789 -14.82234 -14.75456 -14.30604 -14.11256 -13.88815 -13.55585 -13.36846 -13.03709 -12.90197 -12.67158 -12.58642 -12.50715 -12.31899 -12.01950 -11.88648 -11.87118 -11.76294 -11.54039 -11.47963 -11.41198 -11.35899 -11.30331 -10.99428 -10.74276 -10.73614 -8.27058 -6.32730 1.19952 1.40342 1.43265 1.55364 1.67090 2.39912 2.94360 3.08221 3.51657 3.72151 3.82094 3.92320 4.04942 4.10736 4.13712 4.18701 4.20870 4.28527 4.36604 4.40046 4.59537 4.65207 4.73818 4.83821 4.85723 4.90736 4.92626 4.94661 4.97916 5.01837 5.04332 5.12558 5.13343 5.31203 5.33486 5.40937 5.42935 5.47508 5.54314 5.57608 5.68207 6.30422 6.75757 6.76565 7.31607 8.90313 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.053111 B = 0.002560 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.068039 B =10936.396195 C =11180.616051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.025 4.025 3 C -0.153 4.153 4 C -0.098 4.098 5 C 0.056 3.944 6 O -0.358 6.358 7 C 0.465 3.535 8 O -0.545 6.545 9 C -0.106 4.106 10 C -0.085 4.085 11 C -0.010 4.010 12 C -0.539 4.539 13 H 0.022 0.978 14 C -0.003 4.003 15 N -0.956 5.956 16 Si 0.960 3.040 17 H -0.265 1.265 18 H -0.287 1.287 19 H -0.235 1.235 20 C -0.146 4.146 21 C -0.186 4.186 22 C -0.176 4.176 23 H 0.065 0.935 24 H 0.048 0.952 25 H 0.061 0.939 26 H 0.065 0.935 27 H 0.049 0.951 28 H 0.065 0.935 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.128 0.872 34 H 0.129 0.871 35 H 0.043 0.957 36 H 0.043 0.957 37 H 0.033 0.967 38 H 0.032 0.968 39 H 0.266 0.734 40 H 0.107 0.893 41 H 0.097 0.903 42 H 0.101 0.899 43 H 0.094 0.906 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.450 -5.575 31.551 32.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.025 4.025 3 C -0.210 4.210 4 C -0.135 4.135 5 C -0.017 4.017 6 O -0.274 6.274 7 C 0.310 3.690 8 O -0.435 6.435 9 C -0.143 4.143 10 C -0.123 4.123 11 C -0.048 4.048 12 C -0.577 4.577 13 H 0.040 0.960 14 C -0.199 4.199 15 N -0.597 5.597 16 Si 0.782 3.218 17 H -0.190 1.190 18 H -0.213 1.213 19 H -0.158 1.158 20 C -0.164 4.164 21 C -0.222 4.222 22 C -0.213 4.213 23 H 0.084 0.916 24 H 0.067 0.933 25 H 0.080 0.920 26 H 0.084 0.916 27 H 0.068 0.932 28 H 0.084 0.916 29 H 0.098 0.902 30 H 0.099 0.901 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.146 0.854 34 H 0.146 0.854 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.051 0.949 38 H 0.050 0.950 39 H 0.075 0.925 40 H 0.126 0.874 41 H 0.115 0.885 42 H 0.119 0.881 43 H 0.113 0.887 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 4.233 -5.263 31.418 32.136 hybrid contribution -0.189 0.192 -0.743 0.790 sum 4.044 -5.072 30.675 31.353 Atomic orbital electron populations 1.21964 0.94146 1.02382 1.01895 1.19931 0.95529 0.94845 0.92233 1.22129 1.01654 0.95236 1.01967 1.21558 1.02049 0.99852 0.90059 1.23426 0.99517 0.96554 0.82226 1.86488 1.69916 1.55952 1.15088 1.24304 0.76471 0.82029 0.86215 1.90652 1.37182 1.27386 1.88264 1.21556 1.04764 1.01710 0.86265 1.21154 0.99770 0.98545 0.92861 1.19545 0.97063 0.96201 0.91942 1.21527 1.31619 1.12679 0.91882 0.95980 1.26182 0.97398 1.00926 0.95440 1.70102 1.47636 1.42748 0.99185 0.85517 0.79397 0.78423 0.78435 1.18951 1.21319 1.15796 1.22255 1.04389 0.99068 0.90717 1.23212 0.92693 1.02674 1.03667 1.22993 0.98127 1.03377 0.96833 0.91619 0.93267 0.92013 0.91587 0.93203 0.91592 0.90216 0.90108 0.91479 0.91519 0.85419 0.85356 0.93806 0.93819 0.94857 0.94993 0.92520 0.87446 0.88494 0.88067 0.88712 0.88287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 7.96 71.98 0.57 -1.42 16 2 C -0.03 -0.33 0.65 -52.18 -0.03 -0.37 16 3 C -0.15 -2.05 6.72 71.98 0.48 -1.56 16 4 C -0.10 -1.53 4.63 30.60 0.14 -1.39 16 5 C 0.06 1.22 4.76 71.98 0.34 1.56 16 6 O -0.36 -9.30 10.22 -51.36 -0.52 -9.82 16 7 C 0.46 14.47 7.96 71.24 0.57 15.04 16 8 O -0.54 -20.97 15.73 21.97 0.35 -20.62 16 9 C -0.11 -3.07 5.81 29.85 0.17 -2.89 16 10 C -0.09 -3.45 4.44 30.59 0.14 -3.31 16 11 C -0.01 -0.47 4.04 29.85 0.12 -0.35 16 12 C -0.54 -31.95 9.66 25.60 0.25 -31.70 16 13 H 0.02 1.47 7.99 -2.91 -0.02 1.44 16 14 C 0.00 -0.20 5.47 84.65 0.46 0.26 16 15 N -0.96 -61.35 13.96 21.45 0.30 -61.05 16 16 Si 0.96 43.62 27.47 68.60 1.88 45.50 16 17 H -0.26 -11.45 7.11 99.48 0.71 -10.75 16 18 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 19 H -0.24 -9.50 6.54 99.48 0.65 -8.85 16 20 C -0.15 -1.66 5.15 -10.79 -0.06 -1.72 16 21 C -0.19 -1.93 9.57 30.59 0.29 -1.64 16 22 C -0.18 -1.78 9.38 30.60 0.29 -1.49 16 23 H 0.06 0.79 7.29 -2.39 -0.02 0.77 16 24 H 0.05 0.77 6.43 -2.39 -0.02 0.76 16 25 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 26 H 0.07 0.83 6.97 -2.39 -0.02 0.82 16 27 H 0.05 0.78 6.43 -2.39 -0.02 0.76 16 28 H 0.07 0.78 7.07 -2.39 -0.02 0.76 16 29 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.07 1.52 6.42 -2.39 -0.02 1.51 16 32 H 0.07 1.51 6.42 -2.39 -0.02 1.50 16 33 H 0.13 3.07 8.14 -2.38 -0.02 3.05 16 34 H 0.13 3.07 8.14 -2.39 -0.02 3.05 16 35 H 0.04 1.90 8.10 -2.38 -0.02 1.88 16 36 H 0.04 1.89 8.10 -2.39 -0.02 1.88 16 37 H 0.03 1.43 7.20 -2.38 -0.02 1.41 16 38 H 0.03 1.35 7.57 -2.39 -0.02 1.34 16 39 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 40 H 0.11 1.18 8.11 -2.39 -0.02 1.16 16 41 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.10 1.05 5.85 -2.39 -0.01 1.03 16 43 H 0.09 0.94 7.07 -2.39 -0.02 0.93 16 44 H 0.10 0.86 8.14 -2.38 -0.02 0.84 16 Total: -1.00 -71.47 346.67 6.64 -64.83 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: 0.90 Total: 12.15 kcal Atomic # 6 Polarization: -34.73 SS G_CDS: 3.74 Total: -30.99 kcal Atomic # 7 Polarization: -61.35 SS G_CDS: 0.30 Total: -61.05 kcal Atomic # 8 Polarization: -30.26 SS G_CDS: -0.18 Total: -30.44 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 1.88 Total: 45.50 kcal Total: -71.47 6.64 -64.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847736793.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.274 kcal (2) G-P(sol) polarization free energy of solvation -71.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds