Wall clock time and date at job start Mon Mar 30 2020 07:32:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47190 * 2 1 4 4 C 1.52998 * 109.47267 * 120.00610 * 2 1 3 5 5 N 1.46904 * 109.47157 * 65.85294 * 4 2 1 6 6 C 1.46905 * 110.99703 * 197.42655 * 5 4 2 7 7 C 1.50693 * 109.47126 * 68.00763 * 6 5 4 8 8 H 1.08000 * 120.00608 * 359.97438 * 7 6 5 9 9 C 1.37884 * 119.99815 * 179.97438 * 7 6 5 10 10 N 1.31511 * 120.00125 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 119.99922 * 179.72377 * 9 7 6 12 12 H 1.48500 * 109.47057 * 60.00131 * 11 9 7 13 13 H 1.48501 * 109.47127 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.47275 * 300.00167 * 11 9 7 15 15 C 1.46894 * 111.00086 * 73.47408 * 5 4 2 16 16 H 1.08996 * 108.85834 * 162.69155 * 15 5 4 17 17 C 1.54067 * 108.87875 * 44.22177 * 15 5 4 18 18 C 1.54068 * 112.82262 * 197.50836 * 17 15 5 19 19 C 1.50474 * 112.49583 * 318.28621 * 18 17 15 20 20 C 1.54249 * 108.52757 * 94.14446 * 19 18 17 21 21 C 1.45545 * 112.39767 * 280.01964 * 20 19 18 22 22 C 1.50477 * 108.87471 * 281.25002 * 15 5 4 23 23 H 1.09003 * 109.63153 * 95.22550 * 22 15 5 24 24 N 1.46901 * 109.63038 * 334.83494 * 22 15 5 25 25 H 1.08999 * 109.46838 * 68.80023 * 1 2 3 26 26 H 1.08998 * 109.47380 * 188.79914 * 1 2 3 27 27 H 1.08997 * 109.46697 * 308.80312 * 1 2 3 28 28 H 1.09002 * 109.46739 * 240.00219 * 2 1 3 29 29 H 1.09004 * 109.46780 * 180.02562 * 3 2 1 30 30 H 1.08993 * 109.47507 * 300.00112 * 3 2 1 31 31 H 1.09002 * 109.47101 * 60.00440 * 3 2 1 32 32 H 1.09005 * 109.46884 * 305.85756 * 4 2 1 33 33 H 1.08998 * 109.47335 * 185.85707 * 4 2 1 34 34 H 1.09002 * 109.46822 * 308.00376 * 6 5 4 35 35 H 1.09000 * 109.46830 * 188.00713 * 6 5 4 36 36 H 0.96994 * 120.00302 * 179.97438 * 10 9 7 37 37 H 1.09003 * 108.81358 * 318.37282 * 17 15 5 38 38 H 1.09003 * 108.81187 * 76.64766 * 17 15 5 39 39 H 1.08997 * 108.88294 * 197.50516 * 18 17 15 40 40 H 1.09002 * 108.79494 * 79.00480 * 18 17 15 41 41 H 1.08997 * 109.62852 * 334.43227 * 19 18 17 42 42 H 1.09000 * 109.78434 * 213.94263 * 19 18 17 43 43 H 1.08999 * 108.89698 * 159.27043 * 20 19 18 44 44 H 1.08999 * 108.81804 * 40.71630 * 20 19 18 45 45 H 1.08991 * 108.89512 * 301.18210 * 21 20 19 46 46 H 1.09003 * 108.81102 * 182.64111 * 21 20 19 47 47 H 1.00896 * 111.00160 * 184.48899 * 24 22 15 48 48 H 1.00896 * 110.99433 * 308.44579 * 24 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 1.2491 5 7 1.6691 -2.1411 1.1805 6 6 1.7623 -2.7741 2.5029 7 6 0.6950 -2.2112 3.4056 8 1 0.0156 -1.4582 3.0343 9 6 0.5858 -2.6575 4.7056 10 7 1.4134 -3.5740 5.1579 11 14 -0.7323 -1.9542 5.8269 12 1 -2.0717 -2.2189 5.2430 13 1 -0.6396 -2.5959 7.1629 14 1 -0.5337 -0.4891 5.9660 15 6 2.4945 -2.8539 0.1963 16 1 2.4191 -3.9251 0.3830 17 6 3.9630 -2.4217 0.3708 18 6 4.8353 -2.7614 -0.8528 19 6 4.5340 -4.1246 -1.4141 20 6 3.5032 -3.9696 -2.5511 21 6 2.1439 -3.8244 -2.0514 22 6 1.9684 -2.5619 -1.1829 23 1 2.5281 -1.7355 -1.6210 24 7 0.5452 -2.2068 -1.1033 25 1 -0.3633 0.3716 -0.9581 26 1 -0.3634 -1.0155 0.1572 27 1 -0.3632 0.6440 0.8009 28 1 1.8933 -0.5138 -0.8900 29 1 3.1301 1.4424 -0.0005 30 1 1.6767 1.9563 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.5936 -0.2717 2.1361 33 1 3.1250 -0.6315 1.3031 34 1 2.7440 -2.5748 2.9326 35 1 1.6218 -3.8502 2.4013 36 1 1.3368 -3.8877 6.0725 37 1 3.9950 -1.3449 0.5374 38 1 4.3752 -2.9230 1.2465 39 1 5.8843 -2.7249 -0.5593 40 1 4.6601 -2.0145 -1.6272 41 1 4.1219 -4.7603 -0.6305 42 1 5.4471 -4.5722 -1.8064 43 1 3.5510 -4.8490 -3.1933 44 1 3.7588 -3.0886 -3.1398 45 1 1.8916 -4.7010 -1.4549 46 1 1.4618 -3.7669 -2.8997 47 1 0.1526 -2.0779 -2.0238 48 1 0.0282 -2.9000 -0.5835 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252457735.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:32:06 Heat of formation + Delta-G solvation = 18.567158 kcal Electronic energy + Delta-G solvation = -23238.273454 eV Core-core repulsion = 20328.615185 eV Total energy + Delta-G solvation = -2909.658269 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.85412 -36.46094 -34.09041 -33.46587 -32.50613 -30.83507 -28.49357 -26.64580 -26.02803 -25.29413 -23.79283 -22.98232 -20.92574 -20.57362 -19.07303 -18.30853 -16.32056 -15.73495 -15.33042 -15.14208 -14.47887 -14.32464 -13.90075 -13.66392 -13.53970 -13.20471 -12.96357 -12.88555 -12.34110 -12.18054 -11.99889 -11.61011 -11.50689 -11.35321 -11.07816 -10.98530 -10.76112 -10.71148 -10.65344 -10.37278 -10.30651 -10.25377 -10.05068 -9.94145 -9.52332 -9.40881 -9.26104 -9.04362 -8.34257 -7.69192 -6.90668 -5.94354 -3.94234 3.38500 3.42071 3.45706 4.48925 4.73666 4.82903 4.85632 5.14806 5.32379 5.39340 5.41039 5.45741 5.49212 5.53879 5.67247 5.69942 5.77742 5.85430 5.94794 6.08027 6.15347 6.20231 6.24324 6.26248 6.29219 6.35880 6.40397 6.41945 6.49932 6.52077 6.63657 6.66974 6.70071 6.84958 7.00746 7.02980 7.32819 7.47125 7.50998 7.66603 7.75355 7.94867 8.07255 8.25963 8.43634 8.73105 9.15652 9.69624 11.16288 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.018360 B = 0.006652 C = 0.005754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.692565 B = 4208.556452 C = 4865.008589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.084 4.084 3 C -0.151 4.151 4 C 0.061 3.939 5 N -0.505 5.505 6 C 0.192 3.808 7 C -0.498 4.498 8 H 0.064 0.936 9 C 0.053 3.947 10 N -0.902 5.902 11 Si 0.895 3.105 12 H -0.277 1.277 13 H -0.290 1.290 14 H -0.278 1.278 15 C 0.089 3.911 16 H 0.064 0.936 17 C -0.162 4.162 18 C -0.111 4.111 19 C -0.118 4.118 20 C -0.110 4.110 21 C -0.155 4.155 22 C 0.106 3.894 23 H 0.076 0.924 24 N -0.804 5.804 25 H 0.020 0.980 26 H 0.100 0.900 27 H 0.016 0.984 28 H 0.081 0.919 29 H 0.039 0.961 30 H 0.042 0.958 31 H 0.046 0.954 32 H 0.074 0.926 33 H 0.025 0.975 34 H -0.014 1.014 35 H 0.023 0.977 36 H 0.259 0.741 37 H 0.079 0.921 38 H 0.057 0.943 39 H 0.051 0.949 40 H 0.055 0.945 41 H 0.066 0.934 42 H 0.056 0.944 43 H 0.050 0.950 44 H 0.056 0.944 45 H 0.059 0.941 46 H 0.052 0.948 47 H 0.318 0.682 48 H 0.348 0.652 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.726 1.993 -15.101 15.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.103 4.103 3 C -0.209 4.209 4 C -0.067 4.067 5 N -0.227 5.227 6 C 0.067 3.933 7 C -0.537 4.537 8 H 0.082 0.918 9 C -0.147 4.147 10 N -0.542 5.542 11 Si 0.723 3.277 12 H -0.203 1.203 13 H -0.216 1.216 14 H -0.204 1.204 15 C -0.021 4.021 16 H 0.083 0.917 17 C -0.201 4.201 18 C -0.149 4.149 19 C -0.156 4.156 20 C -0.148 4.148 21 C -0.195 4.195 22 C -0.006 4.006 23 H 0.094 0.906 24 N -0.332 5.332 25 H 0.040 0.960 26 H 0.119 0.881 27 H 0.035 0.965 28 H 0.099 0.901 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.092 0.908 33 H 0.043 0.957 34 H 0.004 0.996 35 H 0.041 0.959 36 H 0.069 0.931 37 H 0.097 0.903 38 H 0.076 0.924 39 H 0.070 0.930 40 H 0.074 0.926 41 H 0.085 0.915 42 H 0.074 0.926 43 H 0.069 0.931 44 H 0.074 0.926 45 H 0.077 0.923 46 H 0.071 0.929 47 H 0.130 0.870 48 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 3.484 2.505 -14.649 15.265 hybrid contribution 0.183 -0.603 0.556 0.840 sum 3.667 1.902 -14.093 14.686 Atomic orbital electron populations 1.21748 0.94720 1.03630 0.97001 1.21254 0.97331 0.92507 0.99185 1.21943 0.99710 0.98642 1.00591 1.22212 0.96580 0.89709 0.98227 1.62268 1.50556 1.01169 1.08739 1.19722 0.95482 0.94352 0.83759 1.21172 1.15114 1.22195 0.95219 0.91757 1.24980 0.96256 0.95342 0.98144 1.69951 1.37561 1.30146 1.16559 0.86618 0.82327 0.79145 0.79631 1.20262 1.21593 1.20394 1.21497 0.89580 0.98355 0.92692 0.91742 1.22788 0.96592 1.03100 0.97595 1.21265 0.99003 0.96720 0.97956 1.21358 0.98340 0.97810 0.98092 1.20395 0.95533 1.01071 0.97805 1.21444 0.97114 1.00859 1.00061 1.21299 0.90990 0.93770 0.94558 0.90592 1.59612 1.01834 1.52868 1.18908 0.96046 0.88126 0.96532 0.90114 0.94158 0.93842 0.93470 0.90799 0.95745 0.99642 0.95907 0.93108 0.90252 0.92388 0.93015 0.92586 0.91510 0.92551 0.93087 0.92559 0.92259 0.92899 0.87046 0.83757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.89 7.85 37.16 0.29 -1.60 16 2 C -0.08 -1.36 2.37 -90.62 -0.21 -1.57 16 3 C -0.15 -2.21 9.18 37.16 0.34 -1.87 16 4 C 0.06 1.17 3.80 -3.82 -0.01 1.15 16 5 N -0.51 -10.09 2.81 -228.93 -0.64 -10.73 16 6 C 0.19 4.88 4.49 -4.98 -0.02 4.86 16 7 C -0.50 -13.82 8.29 -34.44 -0.29 -14.11 16 8 H 0.06 1.78 7.41 -52.49 -0.39 1.39 16 9 C 0.05 1.52 5.46 -17.82 -0.10 1.42 16 10 N -0.90 -26.93 13.29 55.43 0.74 -26.20 16 11 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 13 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 14 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 15 C 0.09 1.48 1.48 -68.42 -0.10 1.37 16 16 H 0.06 1.18 6.12 -51.93 -0.32 0.86 16 17 C -0.16 -2.57 4.72 -25.62 -0.12 -2.69 16 18 C -0.11 -1.42 5.32 -27.44 -0.15 -1.56 16 19 C -0.12 -1.40 5.61 -27.34 -0.15 -1.56 16 20 C -0.11 -1.20 5.26 -29.59 -0.16 -1.36 16 21 C -0.15 -1.82 4.90 -29.60 -0.14 -1.97 16 22 C 0.11 1.43 1.60 -68.33 -0.11 1.32 16 23 H 0.08 1.05 5.20 -51.93 -0.27 0.78 16 24 N -0.80 -10.74 3.27 -5.19 -0.02 -10.76 16 25 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.10 1.80 5.32 -51.93 -0.28 1.52 16 27 H 0.02 0.28 8.12 -51.93 -0.42 -0.14 16 28 H 0.08 1.25 3.82 -51.93 -0.20 1.05 16 29 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.07 1.66 6.74 -51.93 -0.35 1.31 16 33 H 0.02 0.48 4.93 -51.93 -0.26 0.22 16 34 H -0.01 -0.40 7.91 -51.93 -0.41 -0.81 16 35 H 0.02 0.63 7.75 -51.93 -0.40 0.23 16 36 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 37 H 0.08 1.32 4.86 -51.93 -0.25 1.07 16 38 H 0.06 1.03 8.04 -51.93 -0.42 0.62 16 39 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.06 0.68 6.62 -51.93 -0.34 0.33 16 41 H 0.07 0.89 6.97 -51.93 -0.36 0.53 16 42 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 43 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.06 0.59 7.46 -51.93 -0.39 0.20 16 45 H 0.06 0.77 7.47 -51.93 -0.39 0.38 16 46 H 0.05 0.56 7.97 -51.93 -0.41 0.15 16 47 H 0.32 3.56 8.88 -39.29 -0.35 3.21 16 48 H 0.35 5.15 8.52 -39.29 -0.33 4.82 16 LS Contribution 335.96 15.07 5.06 5.06 Total: -1.00 -28.03 335.96 -9.45 -37.48 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: -8.63 Total: 6.41 kcal Atomic # 6 Polarization: -17.22 SS G_CDS: -0.93 Total: -18.16 kcal Atomic # 7 Polarization: -47.77 SS G_CDS: 0.08 Total: -47.69 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -28.03 -9.45 -37.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252457735.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.048 kcal (2) G-P(sol) polarization free energy of solvation -28.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds