Wall clock time and date at job start Mon Mar 30 2020 07:32:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47190 * 2 1 4 4 C 1.52998 * 109.47267 * 120.00610 * 2 1 3 5 5 N 1.46904 * 109.47157 * 65.85294 * 4 2 1 6 6 C 1.46905 * 110.99703 * 197.42655 * 5 4 2 7 7 C 1.50693 * 109.47126 * 68.00763 * 6 5 4 8 8 H 1.08000 * 120.00608 * 359.97438 * 7 6 5 9 9 C 1.37884 * 119.99815 * 179.97438 * 7 6 5 10 10 N 1.31511 * 120.00125 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 119.99922 * 179.72377 * 9 7 6 12 12 H 1.48500 * 109.47057 * 60.00131 * 11 9 7 13 13 H 1.48501 * 109.47127 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.47275 * 300.00167 * 11 9 7 15 15 C 1.46894 * 111.00086 * 73.47408 * 5 4 2 16 16 H 1.08996 * 108.85834 * 162.69155 * 15 5 4 17 17 C 1.54067 * 108.87875 * 44.22177 * 15 5 4 18 18 C 1.54068 * 112.82262 * 197.50836 * 17 15 5 19 19 C 1.50474 * 112.49583 * 318.28621 * 18 17 15 20 20 C 1.54249 * 108.52757 * 94.14446 * 19 18 17 21 21 C 1.45545 * 112.39767 * 280.01964 * 20 19 18 22 22 C 1.50477 * 108.87471 * 281.25002 * 15 5 4 23 23 H 1.09003 * 109.63153 * 95.22550 * 22 15 5 24 24 N 1.46901 * 109.63038 * 334.83494 * 22 15 5 25 25 H 1.08999 * 109.46838 * 68.80023 * 1 2 3 26 26 H 1.08998 * 109.47380 * 188.79914 * 1 2 3 27 27 H 1.08997 * 109.46697 * 308.80312 * 1 2 3 28 28 H 1.09002 * 109.46739 * 240.00219 * 2 1 3 29 29 H 1.09004 * 109.46780 * 180.02562 * 3 2 1 30 30 H 1.08993 * 109.47507 * 300.00112 * 3 2 1 31 31 H 1.09002 * 109.47101 * 60.00440 * 3 2 1 32 32 H 1.09005 * 109.46884 * 305.85756 * 4 2 1 33 33 H 1.08998 * 109.47335 * 185.85707 * 4 2 1 34 34 H 1.09002 * 109.46822 * 308.00376 * 6 5 4 35 35 H 1.09000 * 109.46830 * 188.00713 * 6 5 4 36 36 H 0.96994 * 120.00302 * 179.97438 * 10 9 7 37 37 H 1.09003 * 108.81358 * 318.37282 * 17 15 5 38 38 H 1.09003 * 108.81187 * 76.64766 * 17 15 5 39 39 H 1.08997 * 108.88294 * 197.50516 * 18 17 15 40 40 H 1.09002 * 108.79494 * 79.00480 * 18 17 15 41 41 H 1.08997 * 109.62852 * 334.43227 * 19 18 17 42 42 H 1.09000 * 109.78434 * 213.94263 * 19 18 17 43 43 H 1.08999 * 108.89698 * 159.27043 * 20 19 18 44 44 H 1.08999 * 108.81804 * 40.71630 * 20 19 18 45 45 H 1.08991 * 108.89512 * 301.18210 * 21 20 19 46 46 H 1.09003 * 108.81102 * 182.64111 * 21 20 19 47 47 H 1.00896 * 111.00160 * 184.48899 * 24 22 15 48 48 H 1.00896 * 110.99433 * 308.44579 * 24 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 1.2491 5 7 1.6691 -2.1411 1.1805 6 6 1.7623 -2.7741 2.5029 7 6 0.6950 -2.2112 3.4056 8 1 0.0156 -1.4582 3.0343 9 6 0.5858 -2.6575 4.7056 10 7 1.4134 -3.5740 5.1579 11 14 -0.7323 -1.9542 5.8269 12 1 -2.0717 -2.2189 5.2430 13 1 -0.6396 -2.5959 7.1629 14 1 -0.5337 -0.4891 5.9660 15 6 2.4945 -2.8539 0.1963 16 1 2.4191 -3.9251 0.3830 17 6 3.9630 -2.4217 0.3708 18 6 4.8353 -2.7614 -0.8528 19 6 4.5340 -4.1246 -1.4141 20 6 3.5032 -3.9696 -2.5511 21 6 2.1439 -3.8244 -2.0514 22 6 1.9684 -2.5619 -1.1829 23 1 2.5281 -1.7355 -1.6210 24 7 0.5452 -2.2068 -1.1033 25 1 -0.3633 0.3716 -0.9581 26 1 -0.3634 -1.0155 0.1572 27 1 -0.3632 0.6440 0.8009 28 1 1.8933 -0.5138 -0.8900 29 1 3.1301 1.4424 -0.0005 30 1 1.6767 1.9563 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.5936 -0.2717 2.1361 33 1 3.1250 -0.6315 1.3031 34 1 2.7440 -2.5748 2.9326 35 1 1.6218 -3.8502 2.4013 36 1 1.3368 -3.8877 6.0725 37 1 3.9950 -1.3449 0.5374 38 1 4.3752 -2.9230 1.2465 39 1 5.8843 -2.7249 -0.5593 40 1 4.6601 -2.0145 -1.6272 41 1 4.1219 -4.7603 -0.6305 42 1 5.4471 -4.5722 -1.8064 43 1 3.5510 -4.8490 -3.1933 44 1 3.7588 -3.0886 -3.1398 45 1 1.8916 -4.7010 -1.4549 46 1 1.4618 -3.7669 -2.8997 47 1 0.1526 -2.0779 -2.0238 48 1 0.0282 -2.9000 -0.5835 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000252457735.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:32:05 Heat of formation + Delta-G solvation = 2.421030 kcal Electronic energy + Delta-G solvation = -23238.973603 eV Core-core repulsion = 20328.615185 eV Total energy + Delta-G solvation = -2910.358418 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.16549 -37.77334 -35.60962 -34.71980 -34.37578 -32.19190 -29.86842 -28.39602 -27.35792 -26.79174 -25.26114 -24.26530 -22.64083 -21.62425 -20.40983 -19.64400 -18.41573 -17.03008 -16.74732 -16.61279 -16.17816 -15.49667 -15.14971 -15.05860 -14.86419 -14.54471 -14.23487 -14.12091 -14.08416 -13.62163 -13.46192 -13.06020 -12.89516 -12.76539 -12.69745 -12.48325 -12.40002 -12.24502 -12.00137 -11.92314 -11.54755 -11.50457 -11.35292 -11.23828 -11.16991 -10.93940 -10.85533 -10.57931 -10.54592 -8.79586 -8.63615 -8.15234 -6.24267 1.39955 1.42976 1.50694 2.42030 3.15902 3.39686 3.64821 3.82271 4.07731 4.16084 4.20713 4.22655 4.34330 4.37128 4.48080 4.50839 4.59350 4.61742 4.80774 4.85694 4.93175 4.97759 5.05933 5.13011 5.14101 5.16720 5.24034 5.27128 5.31340 5.34206 5.34462 5.35885 5.41248 5.43661 5.50953 5.56487 5.61270 5.69004 5.72969 6.00158 6.15965 6.32847 6.57541 6.58882 6.90539 6.96527 7.05654 7.45329 8.94581 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.018360 B = 0.006652 C = 0.005754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.692565 B = 4208.556452 C = 4865.008589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.073 4.073 3 C -0.148 4.148 4 C 0.064 3.936 5 N -0.499 5.499 6 C 0.212 3.788 7 C -0.509 4.509 8 H 0.062 0.938 9 C -0.001 4.001 10 N -0.938 5.938 11 Si 0.963 3.037 12 H -0.267 1.267 13 H -0.285 1.285 14 H -0.271 1.271 15 C 0.091 3.909 16 H 0.041 0.959 17 C -0.157 4.157 18 C -0.103 4.103 19 C -0.119 4.119 20 C -0.108 4.108 21 C -0.146 4.146 22 C 0.117 3.883 23 H 0.086 0.914 24 N -0.810 5.810 25 H 0.044 0.956 26 H 0.086 0.914 27 H -0.003 1.003 28 H 0.096 0.904 29 H 0.047 0.953 30 H 0.065 0.935 31 H 0.035 0.965 32 H 0.036 0.964 33 H 0.024 0.976 34 H -0.051 1.051 35 H -0.008 1.008 36 H 0.261 0.739 37 H 0.074 0.926 38 H 0.023 0.977 39 H 0.059 0.941 40 H 0.075 0.925 41 H 0.042 0.958 42 H 0.074 0.926 43 H 0.066 0.934 44 H 0.072 0.928 45 H 0.041 0.959 46 H 0.074 0.926 47 H 0.336 0.664 48 H 0.339 0.661 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.339 3.180 -17.756 18.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.092 4.092 3 C -0.206 4.206 4 C -0.064 4.064 5 N -0.221 5.221 6 C 0.085 3.915 7 C -0.547 4.547 8 H 0.080 0.920 9 C -0.198 4.198 10 N -0.580 5.580 11 Si 0.789 3.211 12 H -0.192 1.192 13 H -0.211 1.211 14 H -0.197 1.197 15 C -0.019 4.019 16 H 0.059 0.941 17 C -0.196 4.196 18 C -0.141 4.141 19 C -0.157 4.157 20 C -0.146 4.146 21 C -0.186 4.186 22 C 0.005 3.995 23 H 0.104 0.896 24 N -0.339 5.339 25 H 0.063 0.937 26 H 0.105 0.895 27 H 0.017 0.983 28 H 0.114 0.886 29 H 0.066 0.934 30 H 0.084 0.916 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.041 0.959 34 H -0.033 1.033 35 H 0.010 0.990 36 H 0.070 0.930 37 H 0.092 0.908 38 H 0.042 0.958 39 H 0.077 0.923 40 H 0.093 0.907 41 H 0.061 0.939 42 H 0.093 0.907 43 H 0.084 0.916 44 H 0.091 0.909 45 H 0.060 0.940 46 H 0.093 0.907 47 H 0.150 0.850 48 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 3.098 3.705 -17.342 18.002 hybrid contribution 0.348 -1.002 1.384 1.743 sum 3.446 2.704 -15.959 16.549 Atomic orbital electron populations 1.21689 0.94798 1.02498 0.97575 1.21187 0.97112 0.93368 0.97520 1.21908 1.00259 0.97232 1.01190 1.22213 0.96356 0.89076 0.98708 1.62257 1.51811 1.01690 1.06313 1.19316 0.92991 0.92799 0.86389 1.21452 1.15356 1.21995 0.95948 0.91984 1.25874 0.98534 0.95599 0.99801 1.70090 1.39367 1.31486 1.17010 0.85524 0.79591 0.78530 0.77494 1.19209 1.21068 1.19656 1.21594 0.89985 0.96556 0.93731 0.94116 1.22711 0.96531 1.02066 0.98271 1.21223 0.98482 0.97852 0.96588 1.21369 0.99579 0.96776 0.97973 1.20391 0.94224 1.02544 0.97461 1.21349 0.98491 0.98797 0.99999 1.21150 0.91060 0.95141 0.92187 0.89631 1.59521 1.01607 1.52623 1.20145 0.93653 0.89498 0.98341 0.88611 0.93357 0.91569 0.94546 0.94515 0.95878 1.03337 0.98955 0.93006 0.90826 0.95768 0.92254 0.90684 0.93916 0.90685 0.91578 0.90933 0.94047 0.90733 0.85029 0.84739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.44 7.85 71.98 0.57 -2.87 16 2 C -0.07 -2.27 2.37 -10.79 -0.03 -2.29 16 3 C -0.15 -4.01 9.18 71.98 0.66 -3.35 16 4 C 0.06 2.55 3.80 86.30 0.33 2.87 16 5 N -0.50 -20.82 2.81 -878.21 -2.47 -23.29 16 6 C 0.21 11.50 4.49 85.55 0.38 11.88 16 7 C -0.51 -29.47 8.29 25.60 0.21 -29.25 16 8 H 0.06 3.55 7.41 -2.91 -0.02 3.53 16 9 C 0.00 -0.05 5.46 84.66 0.46 0.41 16 10 N -0.94 -58.18 13.29 21.45 0.28 -57.90 16 11 Si 0.96 45.80 29.54 68.60 2.03 47.82 16 12 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 13 H -0.29 -13.25 7.11 99.48 0.71 -12.55 16 14 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 15 C 0.09 3.10 1.48 44.46 0.07 3.17 16 16 H 0.04 1.59 6.12 -2.39 -0.01 1.57 16 17 C -0.16 -5.10 4.72 31.32 0.15 -4.96 16 18 C -0.10 -2.47 5.32 30.14 0.16 -2.31 16 19 C -0.12 -2.63 5.61 30.20 0.17 -2.46 16 20 C -0.11 -2.02 5.26 28.74 0.15 -1.86 16 21 C -0.15 -3.11 4.90 28.74 0.14 -2.97 16 22 C 0.12 2.95 1.60 44.52 0.07 3.02 16 23 H 0.09 2.07 5.20 -2.39 -0.01 2.06 16 24 N -0.81 -20.30 3.27 -170.33 -0.56 -20.85 16 25 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.09 3.04 5.32 -2.39 -0.01 3.02 16 27 H 0.00 -0.09 8.12 -2.39 -0.02 -0.11 16 28 H 0.10 2.70 3.82 -2.39 -0.01 2.69 16 29 H 0.05 1.23 8.14 -2.38 -0.02 1.21 16 30 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.04 1.71 6.74 -2.38 -0.02 1.70 16 33 H 0.02 0.93 4.93 -2.39 -0.01 0.92 16 34 H -0.05 -3.08 7.91 -2.39 -0.02 -3.10 16 35 H -0.01 -0.46 7.75 -2.39 -0.02 -0.47 16 36 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 37 H 0.07 2.48 4.86 -2.39 -0.01 2.47 16 38 H 0.02 0.92 8.04 -2.39 -0.02 0.90 16 39 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.07 1.55 6.62 -2.39 -0.02 1.53 16 41 H 0.04 1.15 6.97 -2.39 -0.02 1.13 16 42 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 43 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 44 H 0.07 1.17 7.46 -2.39 -0.02 1.16 16 45 H 0.04 1.04 7.47 -2.39 -0.02 1.02 16 46 H 0.07 1.31 7.97 -2.39 -0.02 1.29 16 47 H 0.34 6.48 8.88 -89.70 -0.80 5.68 16 48 H 0.34 9.86 8.52 -89.70 -0.76 9.10 16 Total: -1.00 -63.89 335.96 2.16 -61.73 By element: Atomic # 1 Polarization: 24.08 SS G_CDS: -0.62 Total: 23.46 kcal Atomic # 6 Polarization: -34.47 SS G_CDS: 3.49 Total: -30.97 kcal Atomic # 7 Polarization: -99.30 SS G_CDS: -2.74 Total: -102.04 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.82 kcal Total: -63.89 2.16 -61.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252457735.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.154 kcal (2) G-P(sol) polarization free energy of solvation -63.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds