Wall clock time and date at job start Mon Mar 30 2020 08:21:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.46696 * 2 1 4 4 C 1.50701 * 109.46898 * 120.00009 * 2 1 3 5 5 H 1.07993 * 119.99637 * 120.00583 * 4 2 1 6 6 C 1.37876 * 120.00171 * 299.99959 * 4 2 1 7 7 N 1.31521 * 119.99977 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00195 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.46857 * 89.99994 * 8 6 4 10 10 H 1.48496 * 109.47360 * 209.99955 * 8 6 4 11 11 H 1.48499 * 109.46941 * 330.00273 * 8 6 4 12 12 N 1.46896 * 109.47319 * 240.00296 * 2 1 3 13 13 C 1.46897 * 111.00086 * 84.99627 * 12 2 1 14 14 C 1.53004 * 109.47098 * 180.02562 * 13 12 2 15 15 N 1.46894 * 109.47059 * 54.29217 * 14 13 12 16 16 C 1.46902 * 111.00007 * 64.01848 * 15 14 13 17 17 C 1.46900 * 110.99875 * 187.97006 * 15 14 13 18 18 C 1.52996 * 109.46895 * 294.29318 * 14 13 12 19 19 C 1.52994 * 109.47595 * 299.99956 * 18 14 13 20 20 C 1.53004 * 109.47233 * 300.00244 * 19 18 14 21 21 C 1.52999 * 109.46888 * 59.99760 * 20 19 18 22 22 H 1.09000 * 109.47529 * 60.00042 * 21 20 19 23 23 C 1.53002 * 109.47014 * 180.02562 * 21 20 19 24 24 C 1.52999 * 109.47033 * 174.29292 * 14 13 12 25 25 H 1.09002 * 109.47355 * 299.99733 * 1 2 3 26 26 H 1.08998 * 109.47434 * 59.99741 * 1 2 3 27 27 H 1.09006 * 109.47357 * 179.97438 * 1 2 3 28 28 H 0.96996 * 119.99930 * 179.97438 * 7 6 4 29 29 H 1.00896 * 111.00252 * 208.95280 * 12 2 1 30 30 H 1.09000 * 109.47160 * 60.00474 * 13 12 2 31 31 H 1.08998 * 109.47516 * 299.99967 * 13 12 2 32 32 H 1.09001 * 109.47201 * 65.23923 * 16 15 14 33 33 H 1.09000 * 109.47574 * 185.23766 * 16 15 14 34 34 H 1.09001 * 109.47023 * 305.23950 * 16 15 14 35 35 H 1.09003 * 109.47229 * 60.00487 * 17 15 14 36 36 H 1.09004 * 109.46958 * 180.02562 * 17 15 14 37 37 H 1.08997 * 109.47315 * 299.99950 * 17 15 14 38 38 H 1.09000 * 109.47172 * 180.02562 * 18 14 13 39 39 H 1.09005 * 109.47397 * 60.00444 * 18 14 13 40 40 H 1.08992 * 109.47886 * 179.97438 * 19 18 14 41 41 H 1.09008 * 109.47289 * 59.99906 * 19 18 14 42 42 H 1.08999 * 109.46746 * 299.99961 * 20 19 18 43 43 H 1.09001 * 109.47083 * 179.97438 * 20 19 18 44 44 H 1.09000 * 109.47377 * 59.99411 * 23 21 20 45 45 H 1.09001 * 109.46581 * 299.99562 * 23 21 20 46 46 H 1.09003 * 109.47167 * 179.97438 * 23 21 20 47 47 H 1.08990 * 109.47378 * 300.00237 * 24 14 13 48 48 H 1.09000 * 109.47018 * 179.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5884 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9426 0.8297 2.6034 8 14 2.3224 -1.1196 4.0080 9 1 3.6303 -0.5440 4.4119 10 1 1.3443 -0.9490 5.1123 11 1 2.4879 -2.5654 3.7122 12 7 2.0197 -0.6924 -1.1994 13 6 2.0824 0.2227 -2.3468 14 6 2.5950 -0.5331 -3.5745 15 7 1.7619 -1.7214 -3.8011 16 6 0.3801 -1.3417 -4.1245 17 6 2.3338 -2.5726 -4.8529 18 6 4.0443 -0.9635 -3.3398 19 6 4.9122 0.2742 -3.1038 20 6 4.8434 1.1868 -4.3299 21 6 3.3941 1.6173 -4.5645 22 1 3.0288 2.1556 -3.6899 23 6 3.3251 2.5293 -5.7910 24 6 2.5261 0.3795 -4.8006 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 0.7080 1.1608 3.4844 29 1 2.9173 -1.1204 -1.0288 30 1 2.7588 1.0463 -2.1182 31 1 1.0870 0.6164 -2.5525 32 1 0.3623 -0.8119 -5.0769 33 1 -0.2359 -2.2382 -4.1959 34 1 -0.0115 -0.6933 -3.3407 35 1 3.3313 -2.8966 -4.5557 36 1 1.6971 -3.4449 -5.0007 37 1 2.3973 -2.0078 -5.7829 38 1 4.4097 -1.5015 -4.2146 39 1 4.0934 -1.6137 -2.4663 40 1 5.9446 -0.0325 -2.9362 41 1 4.5470 0.8127 -2.2292 42 1 5.2086 0.6483 -5.2045 43 1 5.4613 2.0687 -4.1616 44 1 3.6903 1.9906 -6.6654 45 1 3.9435 3.4112 -5.6231 46 1 2.2925 2.8357 -5.9584 47 1 1.4937 0.6862 -4.9677 48 1 2.8918 -0.1588 -5.6751 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040669420.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:21:14 Heat of formation + Delta-G solvation = -7.146485 kcal Electronic energy + Delta-G solvation = -22770.051612 eV Core-core repulsion = 19859.278315 eV Total energy + Delta-G solvation = -2910.773296 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.20862 -35.95637 -35.33235 -32.69374 -31.95380 -30.01436 -28.11771 -27.59067 -26.05652 -25.20862 -24.30041 -23.27115 -21.62654 -20.39435 -19.64224 -17.89586 -16.32916 -16.04097 -15.03715 -14.97544 -14.68581 -14.38974 -14.34710 -13.60806 -13.37555 -13.30392 -13.05067 -12.77240 -12.58007 -12.32594 -11.95838 -11.78063 -11.58537 -11.52321 -11.38519 -11.24868 -11.13913 -10.91183 -10.76259 -10.67372 -10.45812 -10.28419 -10.18433 -10.04055 -9.95897 -9.84837 -9.57021 -8.71553 -8.38425 -7.76082 -6.94993 -5.94835 -4.00133 3.33851 3.40496 3.45109 4.21534 4.46906 4.74297 4.78791 4.95435 5.14171 5.24325 5.35691 5.39464 5.42488 5.47632 5.51415 5.57280 5.64288 5.70227 5.71849 5.80628 5.83436 5.86089 5.89440 5.97499 6.07902 6.11140 6.17410 6.23682 6.28363 6.30994 6.36115 6.41267 6.50668 6.63169 6.67282 6.98949 7.25038 7.35916 7.49119 7.49785 7.65972 7.88305 8.02585 8.39267 8.58357 8.85869 9.13935 9.65620 11.11515 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.021284 B = 0.005352 C = 0.005066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.240915 B = 5230.184920 C = 5525.605097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.211 3.789 3 H -0.005 1.005 4 C -0.511 4.511 5 H 0.059 0.941 6 C 0.060 3.940 7 N -0.892 5.892 8 Si 0.894 3.106 9 H -0.283 1.283 10 H -0.287 1.287 11 H -0.274 1.274 12 N -0.668 5.668 13 C 0.075 3.925 14 C 0.119 3.881 15 N -0.508 5.508 16 C 0.028 3.972 17 C 0.019 3.981 18 C -0.109 4.109 19 C -0.124 4.124 20 C -0.110 4.110 21 C -0.092 4.092 22 H 0.075 0.925 23 C -0.145 4.145 24 C -0.138 4.138 25 H 0.077 0.923 26 H 0.000 1.000 27 H 0.031 0.969 28 H 0.259 0.741 29 H 0.328 0.672 30 H 0.025 0.975 31 H 0.058 0.942 32 H 0.015 0.985 33 H 0.059 0.941 34 H 0.076 0.924 35 H 0.067 0.933 36 H 0.060 0.940 37 H 0.017 0.983 38 H 0.058 0.942 39 H 0.076 0.924 40 H 0.060 0.940 41 H 0.070 0.930 42 H 0.056 0.944 43 H 0.058 0.942 44 H 0.049 0.951 45 H 0.052 0.948 46 H 0.052 0.948 47 H 0.062 0.938 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.926 -0.100 -16.544 17.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.104 3.896 3 H 0.012 0.988 4 C -0.550 4.550 5 H 0.077 0.923 6 C -0.141 4.141 7 N -0.531 5.531 8 Si 0.722 3.278 9 H -0.209 1.209 10 H -0.213 1.213 11 H -0.199 1.199 12 N -0.299 5.299 13 C -0.055 4.055 14 C 0.029 3.971 15 N -0.230 5.230 16 C -0.120 4.120 17 C -0.129 4.129 18 C -0.146 4.146 19 C -0.162 4.162 20 C -0.148 4.148 21 C -0.111 4.111 22 H 0.094 0.906 23 C -0.202 4.202 24 C -0.178 4.178 25 H 0.095 0.905 26 H 0.019 0.981 27 H 0.050 0.950 28 H 0.069 0.931 29 H 0.147 0.853 30 H 0.043 0.957 31 H 0.076 0.924 32 H 0.034 0.966 33 H 0.078 0.922 34 H 0.095 0.905 35 H 0.086 0.914 36 H 0.079 0.921 37 H 0.036 0.964 38 H 0.076 0.924 39 H 0.095 0.905 40 H 0.079 0.921 41 H 0.089 0.911 42 H 0.075 0.925 43 H 0.077 0.923 44 H 0.069 0.931 45 H 0.071 0.929 46 H 0.071 0.929 47 H 0.081 0.919 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.189 -0.531 -16.112 16.656 hybrid contribution 0.975 0.610 0.291 1.186 sum 5.163 0.079 -15.821 16.642 Atomic orbital electron populations 1.21674 0.98139 0.99182 0.98866 1.19077 0.92489 0.92016 0.86066 0.98790 1.21280 1.30986 1.12254 0.90496 0.92324 1.24915 0.95162 0.95036 0.98962 1.69907 1.36886 1.23096 1.23238 0.86563 0.78384 0.80149 0.82683 1.20893 1.21324 1.19858 1.60571 1.32147 1.32308 1.04890 1.21983 0.98940 0.93528 0.91077 1.21095 0.92872 0.89007 0.94144 1.62052 1.01576 1.17552 1.41784 1.22365 0.90046 1.00698 0.98893 1.22470 1.00706 0.97138 0.92622 1.21636 0.93368 0.97538 1.02104 1.21618 0.99512 0.96570 0.98469 1.21566 0.96011 0.99056 0.98129 1.21142 0.95572 0.95886 0.98504 0.90628 1.21826 1.01405 0.99231 0.97784 1.22244 0.99838 0.96732 0.98979 0.90462 0.98112 0.94989 0.93103 0.85343 0.95691 0.92405 0.96646 0.92177 0.90489 0.91386 0.92099 0.96443 0.92355 0.90516 0.92114 0.91129 0.92531 0.92348 0.93149 0.92877 0.92922 0.91906 0.92305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.06 9.19 37.16 0.34 -2.72 16 2 C 0.21 5.41 2.60 -68.87 -0.18 5.23 16 3 H -0.01 -0.15 7.80 -51.93 -0.40 -0.56 16 4 C -0.51 -14.22 8.59 -34.44 -0.30 -14.51 16 5 H 0.06 1.62 7.62 -52.49 -0.40 1.22 16 6 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 7 N -0.89 -25.87 11.32 55.43 0.63 -25.25 16 8 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 9 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 12 N -0.67 -14.32 6.01 -107.95 -0.65 -14.97 16 13 C 0.08 1.35 3.32 -3.82 -0.01 1.34 16 14 C 0.12 1.73 0.22 -131.60 -0.03 1.70 16 15 N -0.51 -7.62 4.54 -235.40 -1.07 -8.68 16 16 C 0.03 0.41 8.73 60.07 0.52 0.93 16 17 C 0.02 0.24 8.75 60.06 0.53 0.76 16 18 C -0.11 -1.49 4.01 -26.74 -0.11 -1.59 16 19 C -0.12 -1.60 5.65 -26.73 -0.15 -1.75 16 20 C -0.11 -1.25 5.20 -26.73 -0.14 -1.39 16 21 C -0.09 -1.10 2.45 -90.62 -0.22 -1.32 16 22 H 0.08 1.03 6.56 -51.93 -0.34 0.69 16 23 C -0.15 -1.47 9.19 37.16 0.34 -1.13 16 24 C -0.14 -1.75 3.29 -26.73 -0.09 -1.84 16 25 H 0.08 2.14 6.07 -51.93 -0.32 1.82 16 26 H 0.00 0.00 7.45 -51.93 -0.39 -0.39 16 27 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 29 H 0.33 7.06 6.51 -39.29 -0.26 6.80 16 30 H 0.03 0.47 4.75 -51.93 -0.25 0.22 16 31 H 0.06 1.10 5.97 -51.93 -0.31 0.79 16 32 H 0.02 0.20 6.55 -51.93 -0.34 -0.14 16 33 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.08 1.27 6.29 -51.93 -0.33 0.94 16 35 H 0.07 0.82 6.20 -51.93 -0.32 0.50 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.02 0.20 6.54 -51.93 -0.34 -0.14 16 38 H 0.06 0.72 6.32 -51.93 -0.33 0.40 16 39 H 0.08 1.18 6.70 -51.93 -0.35 0.83 16 40 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.07 1.06 6.31 -51.92 -0.33 0.73 16 42 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 44 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.06 0.82 6.46 -51.93 -0.34 0.49 16 48 H 0.06 0.71 6.62 -51.93 -0.34 0.37 16 LS Contribution 341.52 15.07 5.15 5.15 Total: -1.00 -28.35 341.52 -9.16 -37.51 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: -8.61 Total: 4.35 kcal Atomic # 6 Polarization: -15.09 SS G_CDS: 0.42 Total: -14.68 kcal Atomic # 7 Polarization: -47.81 SS G_CDS: -1.09 Total: -48.90 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -28.35 -9.16 -37.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040669420.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.361 kcal (2) G-P(sol) polarization free energy of solvation -28.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds