Wall clock time and date at job start Mon Mar 30 2020 08:21:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.46696 * 2 1 4 4 C 1.50701 * 109.46898 * 120.00009 * 2 1 3 5 5 H 1.07993 * 119.99637 * 120.00583 * 4 2 1 6 6 C 1.37876 * 120.00171 * 299.99959 * 4 2 1 7 7 N 1.31521 * 119.99977 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00195 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.46857 * 89.99994 * 8 6 4 10 10 H 1.48496 * 109.47360 * 209.99955 * 8 6 4 11 11 H 1.48499 * 109.46941 * 330.00273 * 8 6 4 12 12 N 1.46896 * 109.47319 * 240.00296 * 2 1 3 13 13 C 1.46897 * 111.00086 * 84.99627 * 12 2 1 14 14 C 1.53004 * 109.47098 * 180.02562 * 13 12 2 15 15 N 1.46894 * 109.47059 * 54.29217 * 14 13 12 16 16 C 1.46902 * 111.00007 * 64.01848 * 15 14 13 17 17 C 1.46900 * 110.99875 * 187.97006 * 15 14 13 18 18 C 1.52996 * 109.46895 * 294.29318 * 14 13 12 19 19 C 1.52994 * 109.47595 * 299.99956 * 18 14 13 20 20 C 1.53004 * 109.47233 * 300.00244 * 19 18 14 21 21 C 1.52999 * 109.46888 * 59.99760 * 20 19 18 22 22 H 1.09000 * 109.47529 * 60.00042 * 21 20 19 23 23 C 1.53002 * 109.47014 * 180.02562 * 21 20 19 24 24 C 1.52999 * 109.47033 * 174.29292 * 14 13 12 25 25 H 1.09002 * 109.47355 * 299.99733 * 1 2 3 26 26 H 1.08998 * 109.47434 * 59.99741 * 1 2 3 27 27 H 1.09006 * 109.47357 * 179.97438 * 1 2 3 28 28 H 0.96996 * 119.99930 * 179.97438 * 7 6 4 29 29 H 1.00896 * 111.00252 * 208.95280 * 12 2 1 30 30 H 1.09000 * 109.47160 * 60.00474 * 13 12 2 31 31 H 1.08998 * 109.47516 * 299.99967 * 13 12 2 32 32 H 1.09001 * 109.47201 * 65.23923 * 16 15 14 33 33 H 1.09000 * 109.47574 * 185.23766 * 16 15 14 34 34 H 1.09001 * 109.47023 * 305.23950 * 16 15 14 35 35 H 1.09003 * 109.47229 * 60.00487 * 17 15 14 36 36 H 1.09004 * 109.46958 * 180.02562 * 17 15 14 37 37 H 1.08997 * 109.47315 * 299.99950 * 17 15 14 38 38 H 1.09000 * 109.47172 * 180.02562 * 18 14 13 39 39 H 1.09005 * 109.47397 * 60.00444 * 18 14 13 40 40 H 1.08992 * 109.47886 * 179.97438 * 19 18 14 41 41 H 1.09008 * 109.47289 * 59.99906 * 19 18 14 42 42 H 1.08999 * 109.46746 * 299.99961 * 20 19 18 43 43 H 1.09001 * 109.47083 * 179.97438 * 20 19 18 44 44 H 1.09000 * 109.47377 * 59.99411 * 23 21 20 45 45 H 1.09001 * 109.46581 * 299.99562 * 23 21 20 46 46 H 1.09003 * 109.47167 * 179.97438 * 23 21 20 47 47 H 1.08990 * 109.47378 * 300.00237 * 24 14 13 48 48 H 1.09000 * 109.47018 * 179.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5884 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9426 0.8297 2.6034 8 14 2.3224 -1.1196 4.0080 9 1 3.6303 -0.5440 4.4119 10 1 1.3443 -0.9490 5.1123 11 1 2.4879 -2.5654 3.7122 12 7 2.0197 -0.6924 -1.1994 13 6 2.0824 0.2227 -2.3468 14 6 2.5950 -0.5331 -3.5745 15 7 1.7619 -1.7214 -3.8011 16 6 0.3801 -1.3417 -4.1245 17 6 2.3338 -2.5726 -4.8529 18 6 4.0443 -0.9635 -3.3398 19 6 4.9122 0.2742 -3.1038 20 6 4.8434 1.1868 -4.3299 21 6 3.3941 1.6173 -4.5645 22 1 3.0288 2.1556 -3.6899 23 6 3.3251 2.5293 -5.7910 24 6 2.5261 0.3795 -4.8006 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 0.7080 1.1608 3.4844 29 1 2.9173 -1.1204 -1.0288 30 1 2.7588 1.0463 -2.1182 31 1 1.0870 0.6164 -2.5525 32 1 0.3623 -0.8119 -5.0769 33 1 -0.2359 -2.2382 -4.1959 34 1 -0.0115 -0.6933 -3.3407 35 1 3.3313 -2.8966 -4.5557 36 1 1.6971 -3.4449 -5.0007 37 1 2.3973 -2.0078 -5.7829 38 1 4.4097 -1.5015 -4.2146 39 1 4.0934 -1.6137 -2.4663 40 1 5.9446 -0.0325 -2.9362 41 1 4.5470 0.8127 -2.2292 42 1 5.2086 0.6483 -5.2045 43 1 5.4613 2.0687 -4.1616 44 1 3.6903 1.9906 -6.6654 45 1 3.9435 3.4112 -5.6231 46 1 2.2925 2.8357 -5.9584 47 1 1.4937 0.6862 -4.9677 48 1 2.8918 -0.1588 -5.6751 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000040669420.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:21:14 Heat of formation + Delta-G solvation = -24.791353 kcal Electronic energy + Delta-G solvation = -22770.816751 eV Core-core repulsion = 19859.278315 eV Total energy + Delta-G solvation = -2911.538435 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.35843 -37.32721 -36.87321 -34.44223 -33.23173 -31.45330 -29.65294 -28.76700 -27.31722 -27.02161 -25.64082 -24.62441 -22.67578 -21.65399 -21.37492 -19.26998 -18.21220 -17.23285 -16.87254 -16.10322 -15.96592 -15.91516 -15.37874 -14.99839 -14.87280 -14.56736 -14.39580 -14.11913 -13.87174 -13.45310 -13.29756 -13.19735 -12.90560 -12.80260 -12.69337 -12.59013 -12.50055 -12.43393 -12.36234 -12.17148 -12.10005 -11.97478 -11.70622 -11.41374 -11.22457 -11.12263 -10.82540 -10.80577 -10.53210 -8.87240 -8.76974 -8.10338 -6.23915 1.42037 1.43491 1.54472 2.43359 3.09973 3.18000 3.65863 3.75901 3.86543 3.99446 4.09363 4.27135 4.37757 4.39374 4.48895 4.50725 4.60498 4.64617 4.69015 4.75436 4.79921 4.82862 4.83928 4.89942 4.91536 5.01970 5.03130 5.09377 5.11345 5.17679 5.18768 5.20690 5.27487 5.32568 5.37271 5.43014 5.48896 5.52580 5.59650 5.71320 5.91104 6.26448 6.36371 6.42015 6.59591 6.90246 7.12178 7.46766 8.95360 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.021284 B = 0.005352 C = 0.005066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.240915 B = 5230.184920 C = 5525.605097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.217 3.783 3 H -0.040 1.040 4 C -0.531 4.531 5 H 0.056 0.944 6 C 0.012 3.988 7 N -0.920 5.920 8 Si 0.962 3.038 9 H -0.275 1.275 10 H -0.283 1.283 11 H -0.268 1.268 12 N -0.662 5.662 13 C 0.081 3.919 14 C 0.126 3.874 15 N -0.533 5.533 16 C 0.033 3.967 17 C 0.022 3.978 18 C -0.105 4.105 19 C -0.122 4.122 20 C -0.104 4.104 21 C -0.093 4.093 22 H 0.050 0.950 23 C -0.140 4.140 24 C -0.129 4.129 25 H 0.053 0.947 26 H 0.015 0.985 27 H 0.025 0.975 28 H 0.261 0.739 29 H 0.328 0.672 30 H 0.017 0.983 31 H 0.043 0.957 32 H 0.033 0.967 33 H 0.066 0.934 34 H 0.048 0.952 35 H 0.072 0.928 36 H 0.067 0.933 37 H 0.032 0.968 38 H 0.080 0.920 39 H 0.055 0.945 40 H 0.073 0.927 41 H 0.040 0.960 42 H 0.075 0.925 43 H 0.065 0.935 44 H 0.064 0.936 45 H 0.059 0.941 46 H 0.051 0.949 47 H 0.057 0.943 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.138 -0.984 -18.212 19.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.108 3.892 3 H -0.023 1.023 4 C -0.569 4.569 5 H 0.075 0.925 6 C -0.187 4.187 7 N -0.560 5.560 8 Si 0.787 3.213 9 H -0.201 1.201 10 H -0.209 1.209 11 H -0.193 1.193 12 N -0.293 5.293 13 C -0.049 4.049 14 C 0.036 3.964 15 N -0.255 5.255 16 C -0.115 4.115 17 C -0.126 4.126 18 C -0.142 4.142 19 C -0.160 4.160 20 C -0.142 4.142 21 C -0.112 4.112 22 H 0.068 0.932 23 C -0.197 4.197 24 C -0.169 4.169 25 H 0.072 0.928 26 H 0.034 0.966 27 H 0.044 0.956 28 H 0.070 0.930 29 H 0.146 0.854 30 H 0.035 0.965 31 H 0.062 0.938 32 H 0.051 0.949 33 H 0.084 0.916 34 H 0.067 0.933 35 H 0.090 0.910 36 H 0.086 0.914 37 H 0.050 0.950 38 H 0.099 0.901 39 H 0.074 0.926 40 H 0.092 0.908 41 H 0.059 0.941 42 H 0.093 0.907 43 H 0.084 0.916 44 H 0.083 0.917 45 H 0.078 0.922 46 H 0.070 0.930 47 H 0.075 0.925 48 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 5.406 -1.418 -17.802 18.659 hybrid contribution 0.578 0.902 0.789 1.331 sum 5.984 -0.516 -17.013 18.042 Atomic orbital electron populations 1.21469 0.98076 0.98471 0.98382 1.18876 0.92482 0.90300 0.87498 1.02271 1.21571 1.31295 1.12409 0.91656 0.92539 1.25733 0.95234 0.95702 1.02011 1.70039 1.37667 1.24263 1.24004 0.85503 0.77971 0.79073 0.78745 1.20095 1.20902 1.19296 1.60499 1.32052 1.32492 1.04208 1.21975 0.98165 0.93315 0.91466 1.20955 0.93119 0.89186 0.93127 1.61994 1.01887 1.17977 1.43671 1.22275 0.89980 1.00611 0.98663 1.22486 1.00859 0.96960 0.92297 1.21604 0.92898 0.97646 1.02086 1.21594 0.99898 0.96327 0.98214 1.21537 0.95665 0.99162 0.97817 1.21131 0.95811 0.95766 0.98533 0.93154 1.21777 1.01674 0.99160 0.97133 1.22152 0.99852 0.96633 0.98258 0.92805 0.96647 0.95571 0.92969 0.85397 0.96510 0.93834 0.94907 0.91554 0.93298 0.90959 0.91414 0.94972 0.90132 0.92629 0.90794 0.94115 0.90666 0.91582 0.91740 0.92236 0.93005 0.92452 0.90583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.55 9.19 71.98 0.66 -4.88 16 2 C 0.22 11.55 2.60 44.17 0.11 11.67 16 3 H -0.04 -2.37 7.80 -2.39 -0.02 -2.39 16 4 C -0.53 -30.15 8.59 25.60 0.22 -29.93 16 5 H 0.06 3.16 7.62 -2.91 -0.02 3.14 16 6 C 0.01 0.68 5.30 84.65 0.45 1.13 16 7 N -0.92 -54.49 11.32 21.45 0.24 -54.24 16 8 Si 0.96 44.57 29.54 68.60 2.03 46.60 16 9 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 10 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 11 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 12 N -0.66 -29.25 6.01 -495.46 -2.98 -32.23 16 13 C 0.08 3.00 3.32 86.31 0.29 3.28 16 14 C 0.13 3.57 0.22 3.53 0.00 3.57 16 15 N -0.53 -15.32 4.54 -898.68 -4.08 -19.41 16 16 C 0.03 0.92 8.73 127.69 1.12 2.03 16 17 C 0.02 0.48 8.75 127.69 1.12 1.60 16 18 C -0.10 -2.73 4.01 30.59 0.12 -2.61 16 19 C -0.12 -3.04 5.65 30.59 0.17 -2.87 16 20 C -0.10 -2.14 5.20 30.60 0.16 -1.99 16 21 C -0.09 -2.09 2.45 -10.79 -0.03 -2.12 16 22 H 0.05 1.38 6.56 -2.39 -0.02 1.36 16 23 C -0.14 -2.50 9.19 71.98 0.66 -1.84 16 24 C -0.13 -3.03 3.29 30.60 0.10 -2.93 16 25 H 0.05 3.08 6.07 -2.39 -0.01 3.06 16 26 H 0.01 0.71 7.45 -2.39 -0.02 0.69 16 27 H 0.03 1.35 8.14 -2.38 -0.02 1.33 16 28 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 29 H 0.33 14.51 6.51 -89.70 -0.58 13.93 16 30 H 0.02 0.66 4.75 -2.39 -0.01 0.65 16 31 H 0.04 1.72 5.97 -2.39 -0.01 1.71 16 32 H 0.03 0.79 6.55 -2.39 -0.02 0.77 16 33 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.05 1.62 6.29 -2.39 -0.02 1.61 16 35 H 0.07 1.53 6.20 -2.39 -0.01 1.52 16 36 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.03 0.62 6.54 -2.39 -0.02 0.61 16 38 H 0.08 1.76 6.32 -2.39 -0.02 1.75 16 39 H 0.06 1.69 6.70 -2.38 -0.02 1.67 16 40 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.04 1.25 6.31 -2.38 -0.02 1.23 16 42 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 43 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 44 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 45 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 46 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 47 H 0.06 1.41 6.46 -2.39 -0.02 1.40 16 48 H 0.08 1.56 6.62 -2.39 -0.02 1.55 16 Total: -1.00 -61.56 341.52 0.70 -60.86 By element: Atomic # 1 Polarization: 23.97 SS G_CDS: 0.34 Total: 24.30 kcal Atomic # 6 Polarization: -31.03 SS G_CDS: 5.16 Total: -25.88 kcal Atomic # 7 Polarization: -99.07 SS G_CDS: -6.82 Total: -105.88 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -61.56 0.70 -60.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040669420.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.068 kcal (2) G-P(sol) polarization free energy of solvation -61.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds