Wall clock time and date at job start Mon Mar 30 2020 08:21:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.47111 * 2 1 4 4 C 1.52996 * 109.46842 * 239.99781 * 2 1 3 5 5 C 1.53004 * 109.47172 * 179.97438 * 4 2 1 6 6 C 1.53003 * 109.46687 * 60.00347 * 5 4 2 7 7 C 1.53004 * 109.47223 * 299.99757 * 6 5 4 8 8 C 1.53003 * 109.47129 * 300.00543 * 7 6 5 9 9 N 1.46906 * 109.46947 * 294.28557 * 8 7 6 10 10 C 1.46904 * 110.99857 * 179.97438 * 9 8 7 11 11 C 1.52994 * 109.46809 * 179.97438 * 10 9 8 12 12 C 1.50704 * 109.47031 * 180.02562 * 11 10 9 13 13 H 1.08000 * 120.00133 * 359.97438 * 12 11 10 14 14 C 1.37879 * 120.00066 * 180.02562 * 12 11 10 15 15 N 1.31513 * 120.00051 * 359.97438 * 14 12 11 16 16 Si 1.86805 * 119.99863 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47077 * 270.00210 * 16 14 12 18 18 H 1.48495 * 109.47009 * 29.99945 * 16 14 12 19 19 H 1.48491 * 109.46790 * 150.00090 * 16 14 12 20 20 N 1.46889 * 109.47280 * 180.02562 * 7 6 5 21 21 C 1.46904 * 111.00310 * 184.00054 * 20 7 6 22 22 C 1.46904 * 111.00263 * 307.95254 * 20 7 6 23 23 C 1.52999 * 109.46935 * 59.99982 * 7 6 5 24 24 H 1.09003 * 109.46592 * 299.99706 * 1 2 3 25 25 H 1.08998 * 109.47260 * 60.00189 * 1 2 3 26 26 H 1.09001 * 109.47159 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47446 * 300.00014 * 4 2 1 28 28 H 1.08998 * 109.47169 * 59.99974 * 4 2 1 29 29 H 1.09002 * 109.47222 * 179.97438 * 5 4 2 30 30 H 1.08991 * 109.47086 * 300.00415 * 5 4 2 31 31 H 1.09002 * 109.47008 * 180.02562 * 6 5 4 32 32 H 1.09001 * 109.47728 * 59.99867 * 6 5 4 33 33 H 1.08988 * 109.47188 * 174.28362 * 8 7 6 34 34 H 1.09001 * 109.46969 * 54.27951 * 8 7 6 35 35 H 1.00894 * 111.00119 * 56.04576 * 9 8 7 36 36 H 1.09001 * 109.46895 * 59.99874 * 10 9 8 37 37 H 1.08994 * 109.47131 * 300.00060 * 10 9 8 38 38 H 1.09001 * 109.47088 * 60.00490 * 11 10 9 39 39 H 1.09002 * 109.47584 * 299.99912 * 11 10 9 40 40 H 0.97003 * 119.99701 * 359.97438 * 15 14 12 41 41 H 1.09004 * 109.46926 * 65.23412 * 21 20 7 42 42 H 1.08997 * 109.47682 * 185.23725 * 21 20 7 43 43 H 1.09001 * 109.46798 * 305.23810 * 21 20 7 44 44 H 1.09006 * 109.46624 * 59.99976 * 22 20 7 45 45 H 1.08994 * 109.47251 * 180.02562 * 22 20 7 46 46 H 1.09006 * 109.46870 * 300.00078 * 22 20 7 47 47 H 1.09001 * 109.46761 * 60.00074 * 23 7 6 48 48 H 1.08995 * 109.46879 * 179.97438 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5700 -0.7208 -1.2496 6 6 4.0804 -1.4417 -0.0003 7 6 3.5705 -0.7204 1.2490 8 6 4.0800 0.7223 1.2486 9 7 5.5427 0.7250 1.3861 10 6 6.0685 2.0967 1.3890 11 6 7.5911 2.0588 1.5342 12 6 8.1306 3.4660 1.5379 13 1 7.4550 4.3035 1.4454 14 6 9.4866 3.6841 1.6582 15 7 10.3093 2.6642 1.7703 16 14 10.1554 5.4284 1.6620 17 1 10.4637 5.8433 0.2698 18 1 9.1405 6.3462 2.2388 19 1 11.3933 5.4820 2.4802 20 7 4.0611 -1.4122 2.4483 21 6 3.5137 -0.8036 3.6681 22 6 3.7521 -2.8473 2.3918 23 6 2.0405 -0.7209 1.2493 24 1 -0.3632 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.6766 -1.7490 -1.2492 28 1 1.6766 -0.2075 -2.1392 29 1 3.9333 -1.2351 -2.1394 30 1 3.9329 0.3069 -1.2498 31 1 5.1705 -1.4410 -0.0003 32 1 3.7175 -2.4695 0.0000 33 1 3.6356 1.2647 2.0829 34 1 3.8023 1.2054 0.3118 35 1 5.9751 0.1739 0.6601 36 1 5.6379 2.6491 2.2242 37 1 5.8045 2.5890 0.4531 38 1 8.0220 1.5063 0.6993 39 1 7.8547 1.5666 2.4704 40 1 9.9620 1.7585 1.7686 41 1 2.4336 -0.9487 3.6934 42 1 3.9640 -1.2736 4.5424 43 1 3.7371 0.2633 3.6736 44 1 4.2281 -3.2871 1.5153 45 1 4.1259 -3.3351 3.2919 46 1 2.6727 -2.9842 2.3263 47 1 1.6775 -1.7487 1.2495 48 1 1.6773 -0.2074 2.1394 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040669731.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:21:04 Heat of formation + Delta-G solvation = -18.791016 kcal Electronic energy + Delta-G solvation = -22147.168431 eV Core-core repulsion = 19235.890190 eV Total energy + Delta-G solvation = -2911.278241 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.48157 -36.17663 -35.48983 -33.19699 -32.37970 -30.41461 -28.64541 -27.84556 -26.32602 -24.99579 -23.94300 -22.82786 -21.85917 -20.74313 -20.61528 -18.12406 -16.59421 -16.37306 -15.37587 -15.28822 -14.97072 -14.57726 -14.17247 -13.82637 -13.68079 -13.63896 -13.31359 -13.16662 -12.83787 -12.53214 -12.30439 -12.09856 -11.95316 -11.76152 -11.64676 -11.61650 -11.43329 -11.19882 -10.97229 -10.81719 -10.63267 -10.43035 -10.38536 -10.08326 -10.02620 -9.97381 -9.60900 -8.49807 -8.24411 -8.00139 -7.61170 -6.28439 -3.96601 3.47299 3.51650 3.67356 3.96641 4.48893 4.53619 4.59845 4.71835 4.87576 4.90124 5.07422 5.20737 5.23256 5.28675 5.33605 5.42364 5.44529 5.47037 5.49569 5.51607 5.61632 5.62902 5.68119 5.76171 5.84234 5.87344 5.91782 5.94391 5.97518 6.05653 6.10106 6.15738 6.21781 6.30758 6.33305 6.38034 6.43055 6.94534 7.23452 7.24750 7.42649 7.63060 7.86317 8.06066 8.35166 8.55417 8.97566 9.75845 11.12901 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.024035 B = 0.004104 C = 0.003871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.672922 B = 6821.685276 C = 7231.256801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.091 4.091 3 H 0.073 0.927 4 C -0.112 4.112 5 C -0.124 4.124 6 C -0.111 4.111 7 C 0.119 3.881 8 C 0.071 3.929 9 N -0.672 5.672 10 C 0.073 3.927 11 C 0.014 3.986 12 C -0.602 4.602 13 H 0.046 0.954 14 C 0.015 3.985 15 N -0.914 5.914 16 Si 1.071 2.929 17 H -0.289 1.289 18 H -0.289 1.289 19 H -0.284 1.284 20 N -0.511 5.511 21 C 0.027 3.973 22 C 0.018 3.982 23 C -0.140 4.140 24 H 0.052 0.948 25 H 0.053 0.947 26 H 0.051 0.949 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.075 0.925 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.031 0.969 35 H 0.334 0.666 36 H 0.055 0.945 37 H 0.011 0.989 38 H 0.003 0.997 39 H 0.017 0.983 40 H 0.270 0.730 41 H 0.018 0.982 42 H 0.063 0.937 43 H 0.074 0.926 44 H 0.069 0.931 45 H 0.063 0.937 46 H 0.019 0.981 47 H 0.062 0.938 48 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.981 -10.004 -3.299 22.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.111 4.111 3 H 0.092 0.908 4 C -0.149 4.149 5 C -0.161 4.161 6 C -0.149 4.149 7 C 0.029 3.971 8 C -0.059 4.059 9 N -0.303 5.303 10 C -0.055 4.055 11 C -0.023 4.023 12 C -0.641 4.641 13 H 0.065 0.935 14 C -0.189 4.189 15 N -0.551 5.551 16 Si 0.900 3.100 17 H -0.216 1.216 18 H -0.216 1.216 19 H -0.210 1.210 20 N -0.233 5.233 21 C -0.121 4.121 22 C -0.130 4.130 23 C -0.179 4.179 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.094 0.906 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.049 0.951 35 H 0.152 0.848 36 H 0.074 0.926 37 H 0.029 0.971 38 H 0.021 0.979 39 H 0.035 0.965 40 H 0.081 0.919 41 H 0.036 0.964 42 H 0.082 0.918 43 H 0.092 0.908 44 H 0.087 0.913 45 H 0.082 0.918 46 H 0.038 0.962 47 H 0.080 0.920 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -18.069 -9.112 -2.465 20.386 hybrid contribution -2.503 -0.739 -1.012 2.800 sum -20.572 -9.851 -3.478 23.073 Atomic orbital electron populations 1.21827 0.95505 1.01466 1.01524 1.21139 0.95107 1.00065 0.94742 0.90830 1.21580 0.95693 1.00322 0.97317 1.21622 0.95439 1.01350 0.97735 1.21671 1.01601 0.98719 0.92914 1.21059 0.91153 0.94557 0.90366 1.22026 0.90640 0.93888 0.99314 1.60467 1.02642 1.13842 1.53344 1.21985 0.98382 0.87051 0.98084 1.19165 0.89446 0.97258 0.96441 1.22042 0.94732 0.92195 1.55097 0.93536 1.25813 0.93658 1.05543 0.93888 1.70726 1.37818 1.00003 1.46506 0.83518 0.75634 0.74163 0.76686 1.21574 1.21566 1.21002 1.62063 1.58370 1.01549 1.01303 1.22378 0.96102 1.01258 0.92381 1.22483 0.98174 0.89800 1.02523 1.22254 0.96927 1.00652 0.98078 0.92854 0.92770 0.92992 0.92276 0.92177 0.91838 0.91533 0.90626 0.91870 0.91880 0.95125 0.84812 0.92611 0.97108 0.97905 0.96482 0.91916 0.96361 0.91846 0.90758 0.91268 0.91817 0.96218 0.91954 0.91732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.19 37.16 0.34 -0.88 16 2 C -0.09 -0.89 2.45 -90.62 -0.22 -1.12 16 3 H 0.07 0.80 6.56 -51.93 -0.34 0.46 16 4 C -0.11 -1.05 5.20 -26.73 -0.14 -1.19 16 5 C -0.12 -1.32 5.65 -26.73 -0.15 -1.47 16 6 C -0.11 -1.29 4.01 -26.73 -0.11 -1.40 16 7 C 0.12 1.46 0.22 -131.60 -0.03 1.43 16 8 C 0.07 1.06 3.52 -3.82 -0.01 1.04 16 9 N -0.67 -12.31 6.21 -113.78 -0.71 -13.02 16 10 C 0.07 1.61 5.62 -3.82 -0.02 1.59 16 11 C 0.01 0.38 4.54 -27.88 -0.13 0.26 16 12 C -0.60 -17.74 9.11 -34.44 -0.31 -18.06 16 13 H 0.05 1.35 7.74 -52.49 -0.41 0.94 16 14 C 0.01 0.44 5.46 -17.82 -0.10 0.34 16 15 N -0.91 -28.84 13.65 55.43 0.76 -28.08 16 16 Si 1.07 26.00 29.90 -169.99 -5.08 20.91 16 17 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 18 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 19 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 20 N -0.51 -6.75 4.54 -235.40 -1.07 -7.82 16 21 C 0.03 0.34 8.73 60.07 0.52 0.86 16 22 C 0.02 0.20 8.75 60.07 0.53 0.73 16 23 C -0.14 -1.47 3.29 -26.73 -0.09 -1.56 16 24 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 25 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.80 6.31 -51.93 -0.33 0.48 16 31 H 0.08 1.00 6.70 -51.93 -0.35 0.65 16 32 H 0.06 0.67 6.32 -51.93 -0.33 0.34 16 33 H 0.06 0.97 6.67 -51.94 -0.35 0.62 16 34 H 0.03 0.45 4.83 -51.93 -0.25 0.20 16 35 H 0.33 6.07 7.02 -39.29 -0.28 5.80 16 36 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 37 H 0.01 0.24 8.14 -51.93 -0.42 -0.19 16 38 H 0.00 0.08 8.01 -51.93 -0.42 -0.34 16 39 H 0.02 0.49 8.01 -51.93 -0.42 0.07 16 40 H 0.27 8.54 7.22 -40.82 -0.29 8.25 16 41 H 0.02 0.20 6.55 -51.93 -0.34 -0.14 16 42 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.07 1.05 6.29 -51.93 -0.33 0.72 16 44 H 0.07 0.74 6.20 -51.93 -0.32 0.41 16 45 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.02 0.20 6.54 -51.93 -0.34 -0.14 16 47 H 0.06 0.64 6.62 -51.93 -0.34 0.30 16 48 H 0.06 0.70 6.46 -51.93 -0.34 0.37 16 LS Contribution 346.84 15.07 5.23 5.23 Total: -1.00 -31.00 346.84 -9.57 -40.57 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -8.78 Total: 1.61 kcal Atomic # 6 Polarization: -19.49 SS G_CDS: 0.08 Total: -19.41 kcal Atomic # 7 Polarization: -47.90 SS G_CDS: -1.02 Total: -48.91 kcal Atomic # 14 Polarization: 26.00 SS G_CDS: -5.08 Total: 20.91 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.00 -9.57 -40.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040669731.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.776 kcal (2) G-P(sol) polarization free energy of solvation -30.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds