Wall clock time and date at job start Mon Mar 30 2020 08:21:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.47111 * 2 1 4 4 C 1.52996 * 109.46842 * 239.99781 * 2 1 3 5 5 C 1.53004 * 109.47172 * 179.97438 * 4 2 1 6 6 C 1.53003 * 109.46687 * 60.00347 * 5 4 2 7 7 C 1.53004 * 109.47223 * 299.99757 * 6 5 4 8 8 C 1.53003 * 109.47129 * 300.00543 * 7 6 5 9 9 N 1.46906 * 109.46947 * 294.28557 * 8 7 6 10 10 C 1.46904 * 110.99857 * 179.97438 * 9 8 7 11 11 C 1.52994 * 109.46809 * 179.97438 * 10 9 8 12 12 C 1.50704 * 109.47031 * 180.02562 * 11 10 9 13 13 H 1.08000 * 120.00133 * 359.97438 * 12 11 10 14 14 C 1.37879 * 120.00066 * 180.02562 * 12 11 10 15 15 N 1.31513 * 120.00051 * 359.97438 * 14 12 11 16 16 Si 1.86805 * 119.99863 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47077 * 270.00210 * 16 14 12 18 18 H 1.48495 * 109.47009 * 29.99945 * 16 14 12 19 19 H 1.48491 * 109.46790 * 150.00090 * 16 14 12 20 20 N 1.46889 * 109.47280 * 180.02562 * 7 6 5 21 21 C 1.46904 * 111.00310 * 184.00054 * 20 7 6 22 22 C 1.46904 * 111.00263 * 307.95254 * 20 7 6 23 23 C 1.52999 * 109.46935 * 59.99982 * 7 6 5 24 24 H 1.09003 * 109.46592 * 299.99706 * 1 2 3 25 25 H 1.08998 * 109.47260 * 60.00189 * 1 2 3 26 26 H 1.09001 * 109.47159 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47446 * 300.00014 * 4 2 1 28 28 H 1.08998 * 109.47169 * 59.99974 * 4 2 1 29 29 H 1.09002 * 109.47222 * 179.97438 * 5 4 2 30 30 H 1.08991 * 109.47086 * 300.00415 * 5 4 2 31 31 H 1.09002 * 109.47008 * 180.02562 * 6 5 4 32 32 H 1.09001 * 109.47728 * 59.99867 * 6 5 4 33 33 H 1.08988 * 109.47188 * 174.28362 * 8 7 6 34 34 H 1.09001 * 109.46969 * 54.27951 * 8 7 6 35 35 H 1.00894 * 111.00119 * 56.04576 * 9 8 7 36 36 H 1.09001 * 109.46895 * 59.99874 * 10 9 8 37 37 H 1.08994 * 109.47131 * 300.00060 * 10 9 8 38 38 H 1.09001 * 109.47088 * 60.00490 * 11 10 9 39 39 H 1.09002 * 109.47584 * 299.99912 * 11 10 9 40 40 H 0.97003 * 119.99701 * 359.97438 * 15 14 12 41 41 H 1.09004 * 109.46926 * 65.23412 * 21 20 7 42 42 H 1.08997 * 109.47682 * 185.23725 * 21 20 7 43 43 H 1.09001 * 109.46798 * 305.23810 * 21 20 7 44 44 H 1.09006 * 109.46624 * 59.99976 * 22 20 7 45 45 H 1.08994 * 109.47251 * 180.02562 * 22 20 7 46 46 H 1.09006 * 109.46870 * 300.00078 * 22 20 7 47 47 H 1.09001 * 109.46761 * 60.00074 * 23 7 6 48 48 H 1.08995 * 109.46879 * 179.97438 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5700 -0.7208 -1.2496 6 6 4.0804 -1.4417 -0.0003 7 6 3.5705 -0.7204 1.2490 8 6 4.0800 0.7223 1.2486 9 7 5.5427 0.7250 1.3861 10 6 6.0685 2.0967 1.3890 11 6 7.5911 2.0588 1.5342 12 6 8.1306 3.4660 1.5379 13 1 7.4550 4.3035 1.4454 14 6 9.4866 3.6841 1.6582 15 7 10.3093 2.6642 1.7703 16 14 10.1554 5.4284 1.6620 17 1 10.4637 5.8433 0.2698 18 1 9.1405 6.3462 2.2388 19 1 11.3933 5.4820 2.4802 20 7 4.0611 -1.4122 2.4483 21 6 3.5137 -0.8036 3.6681 22 6 3.7521 -2.8473 2.3918 23 6 2.0405 -0.7209 1.2493 24 1 -0.3632 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.6766 -1.7490 -1.2492 28 1 1.6766 -0.2075 -2.1392 29 1 3.9333 -1.2351 -2.1394 30 1 3.9329 0.3069 -1.2498 31 1 5.1705 -1.4410 -0.0003 32 1 3.7175 -2.4695 0.0000 33 1 3.6356 1.2647 2.0829 34 1 3.8023 1.2054 0.3118 35 1 5.9751 0.1739 0.6601 36 1 5.6379 2.6491 2.2242 37 1 5.8045 2.5890 0.4531 38 1 8.0220 1.5063 0.6993 39 1 7.8547 1.5666 2.4704 40 1 9.9620 1.7585 1.7686 41 1 2.4336 -0.9487 3.6934 42 1 3.9640 -1.2736 4.5424 43 1 3.7371 0.2633 3.6736 44 1 4.2281 -3.2871 1.5153 45 1 4.1259 -3.3351 3.2919 46 1 2.6727 -2.9842 2.3263 47 1 1.6775 -1.7487 1.2495 48 1 1.6773 -0.2074 2.1394 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000040669731.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:21:03 Heat of formation + Delta-G solvation = -38.795201 kcal Electronic energy + Delta-G solvation = -22148.035878 eV Core-core repulsion = 19235.890190 eV Total energy + Delta-G solvation = -2912.145688 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.45144 -37.30887 -36.93850 -35.19186 -33.35283 -31.79571 -30.11859 -28.85401 -27.19380 -26.48696 -25.21894 -24.43641 -22.87950 -22.54091 -21.42835 -19.28829 -18.72137 -17.40821 -16.67923 -16.29479 -16.03940 -15.63820 -15.50671 -15.44355 -15.22584 -14.74126 -14.58226 -14.23569 -13.96867 -13.83509 -13.56140 -13.33385 -13.24996 -12.81623 -12.75904 -12.67099 -12.59200 -12.47826 -12.29955 -12.02826 -11.97296 -11.92684 -11.71843 -11.51926 -11.25750 -11.19111 -10.90664 -10.70604 -10.54172 -9.15243 -8.95364 -8.69301 -6.39430 1.52106 1.62261 1.80115 2.56782 2.98607 3.16615 3.39841 3.65254 3.70339 3.89905 4.03079 4.17503 4.27560 4.30571 4.32471 4.42880 4.45778 4.47763 4.54340 4.57206 4.62799 4.69233 4.71119 4.76680 4.79575 4.84782 4.91518 4.96427 4.98151 5.04564 5.11058 5.12626 5.14048 5.23946 5.27915 5.32962 5.37519 5.41101 5.45494 5.53874 5.93446 6.16608 6.19887 6.28752 6.36491 6.50892 6.63624 7.43520 8.71805 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.024035 B = 0.004104 C = 0.003871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.672922 B = 6821.685276 C = 7231.256801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.091 4.091 3 H 0.058 0.942 4 C -0.107 4.107 5 C -0.122 4.122 6 C -0.108 4.108 7 C 0.124 3.876 8 C 0.074 3.926 9 N -0.674 5.674 10 C 0.092 3.908 11 C 0.020 3.980 12 C -0.621 4.621 13 H 0.049 0.951 14 C -0.039 4.039 15 N -0.937 5.937 16 Si 1.123 2.877 17 H -0.271 1.271 18 H -0.269 1.269 19 H -0.281 1.281 20 N -0.537 5.537 21 C 0.031 3.969 22 C 0.021 3.979 23 C -0.131 4.131 24 H 0.052 0.948 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.047 0.953 31 H 0.054 0.946 32 H 0.078 0.922 33 H 0.056 0.944 34 H 0.036 0.964 35 H 0.334 0.666 36 H 0.051 0.949 37 H 0.012 0.988 38 H -0.014 1.014 39 H -0.011 1.011 40 H 0.255 0.745 41 H 0.036 0.964 42 H 0.063 0.937 43 H 0.053 0.947 44 H 0.071 0.929 45 H 0.065 0.935 46 H 0.034 0.966 47 H 0.073 0.927 48 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.771 -9.978 -3.927 24.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.110 4.110 3 H 0.077 0.923 4 C -0.144 4.144 5 C -0.160 4.160 6 C -0.146 4.146 7 C 0.034 3.966 8 C -0.055 4.055 9 N -0.305 5.305 10 C -0.037 4.037 11 C -0.017 4.017 12 C -0.659 4.659 13 H 0.068 0.932 14 C -0.236 4.236 15 N -0.574 5.574 16 Si 0.943 3.057 17 H -0.196 1.196 18 H -0.194 1.194 19 H -0.207 1.207 20 N -0.260 5.260 21 C -0.117 4.117 22 C -0.127 4.127 23 C -0.170 4.170 24 H 0.071 0.929 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.089 0.911 28 H 0.087 0.913 29 H 0.091 0.909 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.096 0.904 33 H 0.075 0.925 34 H 0.054 0.946 35 H 0.153 0.847 36 H 0.069 0.931 37 H 0.030 0.970 38 H 0.004 0.996 39 H 0.008 0.992 40 H 0.065 0.935 41 H 0.054 0.946 42 H 0.082 0.918 43 H 0.071 0.929 44 H 0.090 0.910 45 H 0.084 0.916 46 H 0.052 0.948 47 H 0.091 0.909 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -19.894 -9.111 -3.100 22.100 hybrid contribution -1.961 -0.809 -0.806 2.269 sum -21.855 -9.920 -3.906 24.317 Atomic orbital electron populations 1.21786 0.94100 1.02151 1.01886 1.21128 0.96258 0.99122 0.94537 0.92309 1.21555 0.94363 1.01082 0.97419 1.21602 0.96632 1.00138 0.97597 1.21644 1.00284 0.99640 0.93026 1.20980 0.92455 0.92632 0.90509 1.22082 0.88021 0.96182 0.99209 1.60384 1.04952 1.11508 1.53625 1.21605 0.95088 0.89174 0.97821 1.19041 0.92769 0.95730 0.94169 1.22461 0.95314 0.93337 1.54798 0.93224 1.27497 0.94460 1.09057 0.92571 1.70873 1.38216 0.99848 1.48434 0.82879 0.75554 0.69415 0.77832 1.19613 1.19399 1.20689 1.62022 1.59432 1.02911 1.01606 1.22299 0.97192 0.99870 0.92360 1.22482 0.99114 0.88260 1.02810 1.22164 0.95088 1.01348 0.98432 0.92858 0.92135 0.92108 0.91078 0.91340 0.90922 0.93386 0.92752 0.90357 0.92517 0.94620 0.84745 0.93089 0.97033 0.99615 0.99247 0.93544 0.94607 0.91826 0.92861 0.91029 0.91590 0.94780 0.90865 0.92041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 9.19 71.98 0.66 -1.34 16 2 C -0.09 -1.60 2.45 -10.79 -0.03 -1.62 16 3 H 0.06 1.21 6.56 -2.39 -0.02 1.19 16 4 C -0.11 -1.75 5.20 30.59 0.16 -1.59 16 5 C -0.12 -2.43 5.65 30.60 0.17 -2.26 16 6 C -0.11 -2.39 4.01 30.60 0.12 -2.27 16 7 C 0.12 2.94 0.22 3.53 0.00 2.94 16 8 C 0.07 2.21 3.52 86.30 0.30 2.51 16 9 N -0.67 -25.23 6.21 -513.89 -3.19 -28.42 16 10 C 0.09 4.14 5.62 86.30 0.49 4.63 16 11 C 0.02 1.13 4.54 29.85 0.14 1.27 16 12 C -0.62 -37.11 9.11 25.60 0.23 -36.88 16 13 H 0.05 2.88 7.74 -2.91 -0.02 2.85 16 14 C -0.04 -2.31 5.46 84.66 0.46 -1.85 16 15 N -0.94 -60.22 13.65 21.45 0.29 -59.92 16 16 Si 1.12 51.69 29.90 68.60 2.05 53.74 16 17 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 18 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 19 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 20 N -0.54 -13.75 4.54 -898.66 -4.08 -17.84 16 21 C 0.03 0.76 8.73 127.69 1.12 1.87 16 22 C 0.02 0.43 8.75 127.69 1.12 1.54 16 23 C -0.13 -2.49 3.29 30.59 0.10 -2.39 16 24 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 25 H 0.06 0.78 8.14 -2.39 -0.02 0.77 16 26 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.05 1.13 6.31 -2.39 -0.02 1.12 16 31 H 0.05 1.44 6.70 -2.39 -0.02 1.42 16 32 H 0.08 1.50 6.32 -2.39 -0.02 1.49 16 33 H 0.06 1.75 6.67 -2.39 -0.02 1.74 16 34 H 0.04 1.04 4.83 -2.39 -0.01 1.03 16 35 H 0.33 12.52 7.02 -89.70 -0.63 11.89 16 36 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 37 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 38 H -0.01 -0.84 8.01 -2.39 -0.02 -0.86 16 39 H -0.01 -0.66 8.01 -2.39 -0.02 -0.67 16 40 H 0.26 16.75 7.22 -92.71 -0.67 16.08 16 41 H 0.04 0.74 6.55 -2.39 -0.02 0.72 16 42 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 43 H 0.05 1.52 6.29 -2.39 -0.02 1.50 16 44 H 0.07 1.40 6.20 -2.38 -0.01 1.38 16 45 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 46 H 0.03 0.59 6.54 -2.38 -0.02 0.57 16 47 H 0.07 1.27 6.62 -2.39 -0.02 1.26 16 48 H 0.06 1.22 6.46 -2.39 -0.02 1.21 16 Total: -1.00 -67.04 346.84 0.50 -66.54 By element: Atomic # 1 Polarization: 20.95 SS G_CDS: 0.38 Total: 21.34 kcal Atomic # 6 Polarization: -40.49 SS G_CDS: 5.04 Total: -35.44 kcal Atomic # 7 Polarization: -99.20 SS G_CDS: -6.98 Total: -106.18 kcal Atomic # 14 Polarization: 51.69 SS G_CDS: 2.05 Total: 53.74 kcal Total: -67.04 0.50 -66.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040669731.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.746 kcal (2) G-P(sol) polarization free energy of solvation -67.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds