Wall clock time and date at job start Mon Mar 30 2020 08:32:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.45808 * 2 1 4 4 C 1.53037 * 109.46414 * 119.97174 * 2 1 3 5 5 C 1.53112 * 109.28068 * 179.19673 * 4 2 1 6 6 C 1.53127 * 109.16178 * 302.34153 * 5 4 2 7 7 C 1.53042 * 109.27150 * 57.65552 * 6 5 4 8 8 N 1.46848 * 109.46218 * 240.02198 * 2 1 3 9 9 C 1.46905 * 111.00110 * 54.14984 * 8 2 1 10 10 C 1.52995 * 109.47155 * 190.49264 * 9 8 2 11 11 C 1.53009 * 109.47045 * 179.97438 * 10 9 8 12 12 N 1.46899 * 109.46888 * 179.97438 * 11 10 9 13 13 C 1.46903 * 110.99355 * 179.97438 * 12 11 10 14 14 C 1.53003 * 109.46510 * 180.02562 * 13 12 11 15 15 C 1.53007 * 109.46685 * 179.97438 * 14 13 12 16 16 C 1.50706 * 109.46818 * 179.97438 * 15 14 13 17 17 H 1.07997 * 120.00010 * 0.02562 * 16 15 14 18 18 C 1.37873 * 119.99829 * 179.97438 * 16 15 14 19 19 N 1.31518 * 119.99972 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00062 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47272 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.47023 * 120.00255 * 20 18 16 23 23 H 1.48502 * 109.47057 * 240.00217 * 20 18 16 24 24 H 1.09004 * 109.46920 * 172.47375 * 1 2 3 25 25 H 1.08999 * 109.47130 * 292.47347 * 1 2 3 26 26 H 1.08999 * 109.47150 * 52.47784 * 1 2 3 27 27 H 1.09000 * 109.50456 * 59.25325 * 4 2 1 28 28 H 1.09003 * 109.53204 * 299.15891 * 4 2 1 29 29 H 1.09001 * 109.52441 * 182.44118 * 5 4 2 30 30 H 1.08998 * 109.52883 * 62.24575 * 5 4 2 31 31 H 1.08997 * 109.50098 * 297.71956 * 6 5 4 32 32 H 1.08995 * 109.53646 * 177.61621 * 6 5 4 33 33 H 1.09007 * 109.45874 * 180.80450 * 7 6 5 34 34 H 1.08997 * 109.45588 * 60.83771 * 7 6 5 35 35 H 1.09001 * 109.47163 * 70.48540 * 9 8 2 36 36 H 1.09006 * 109.46777 * 310.48684 * 9 8 2 37 37 H 1.08992 * 109.47720 * 59.99804 * 10 9 8 38 38 H 1.09006 * 109.46804 * 299.99403 * 10 9 8 39 39 H 1.09001 * 109.47057 * 59.99408 * 11 10 9 40 40 H 1.08995 * 109.46621 * 299.99859 * 11 10 9 41 41 H 1.00901 * 111.00158 * 303.94760 * 12 11 10 42 42 H 1.08994 * 109.47398 * 299.99392 * 13 12 11 43 43 H 1.08996 * 109.47256 * 60.00284 * 13 12 11 44 44 H 1.08994 * 109.47282 * 299.99598 * 14 13 12 45 45 H 1.08999 * 109.47599 * 60.00446 * 14 13 12 46 46 H 1.08994 * 109.46939 * 299.99817 * 15 14 13 47 47 H 1.08996 * 109.47161 * 60.00214 * 15 14 13 48 48 H 0.97000 * 119.99945 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0400 -0.7208 1.2500 5 6 3.5709 -0.7360 1.2356 6 6 4.0549 -1.4189 -0.0467 7 6 3.4865 -0.6777 -1.2590 8 7 2.0193 -0.6918 -1.1993 9 6 1.4374 -0.1107 -2.4166 10 6 1.7565 -1.0088 -3.6134 11 6 1.1498 -0.4037 -4.8811 12 7 1.4568 -1.2658 -6.0303 13 6 0.8881 -0.7152 -7.2679 14 6 1.2274 -1.6386 -8.4398 15 6 0.6346 -1.0656 -9.7287 16 6 0.9692 -1.9748 -10.8831 17 1 1.5465 -2.8718 -10.7142 18 6 0.5375 -1.6620 -12.1545 19 7 -0.1659 -0.5699 -12.3601 20 14 0.9516 -2.7893 -13.5853 21 1 1.7463 -3.9429 -13.0927 22 1 -0.3039 -3.2827 -14.2062 23 1 1.7412 -2.0386 -14.5945 24 1 -0.3633 -1.0189 -0.1346 25 1 -0.3633 0.3928 0.9496 26 1 -0.3633 0.6259 -0.8150 27 1 1.6660 -1.7446 1.2577 28 1 1.6895 -0.1987 2.1403 29 1 3.9379 -1.2862 2.1020 30 1 3.9457 0.2871 1.2671 31 1 3.7125 -2.4536 -0.0593 32 1 5.1439 -1.3953 -0.0834 33 1 3.8175 -1.1700 -2.1736 34 1 3.8404 0.3532 -1.2530 35 1 1.8590 0.8806 -2.5834 36 1 0.3565 -0.0309 -2.3002 37 1 1.3349 -1.9999 -3.4466 38 1 2.8374 -1.0885 -3.7298 39 1 1.5711 0.5876 -5.0481 40 1 0.0691 -0.3243 -4.7644 41 1 2.4517 -1.4072 -6.1208 42 1 -0.1945 -0.6387 -7.1678 43 1 1.3070 0.2742 -7.4515 44 1 2.3099 -1.7156 -8.5401 45 1 0.8082 -2.6279 -8.2560 46 1 -0.4480 -0.9890 -9.6280 47 1 1.0534 -0.0762 -9.9127 48 1 -0.4700 -0.3500 -13.2545 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042225910.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:32:34 Heat of formation + Delta-G solvation = -33.507369 kcal Electronic energy + Delta-G solvation = -20182.043903 eV Core-core repulsion = 17270.127512 eV Total energy + Delta-G solvation = -2911.916390 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.69806 -36.80715 -34.73491 -33.48068 -32.87971 -31.67028 -29.82822 -27.43391 -26.42370 -24.88791 -23.26427 -22.11593 -21.56396 -21.06017 -19.95420 -19.89788 -16.33120 -16.28548 -16.05008 -15.56093 -14.86241 -14.66705 -14.63086 -14.45379 -14.01837 -13.88688 -13.75162 -13.32848 -12.72688 -12.42979 -12.30270 -12.21037 -12.14396 -11.74872 -11.69002 -11.39922 -11.29537 -11.16891 -11.08211 -10.91469 -10.78242 -10.54147 -10.50779 -10.38438 -10.37833 -9.65692 -9.29998 -9.00789 -8.54268 -8.31848 -8.12265 -5.96791 -3.98634 3.33389 3.40569 3.45434 3.53727 4.37908 4.43610 4.48592 4.54796 4.56760 4.76812 4.90742 5.02107 5.03563 5.17751 5.18825 5.23986 5.33875 5.38947 5.39133 5.40420 5.53154 5.54058 5.58779 5.61381 5.67653 5.73466 5.81450 5.84337 5.85989 5.92982 5.93854 6.07945 6.14910 6.26598 6.36282 6.76124 6.80829 6.88391 6.90643 7.17761 7.39603 7.67710 7.72562 7.87491 8.04064 8.47520 9.08906 9.65216 11.14733 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.048209 B = 0.002208 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.665622 B =12677.420671 C =13052.103799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.081 3.919 3 H 0.037 0.963 4 C -0.111 4.111 5 C -0.122 4.122 6 C -0.117 4.117 7 C 0.052 3.948 8 N -0.532 5.532 9 C 0.052 3.948 10 C -0.112 4.112 11 C 0.059 3.941 12 N -0.691 5.691 13 C 0.059 3.941 14 C -0.107 4.107 15 C 0.021 3.979 16 C -0.517 4.517 17 H 0.056 0.944 18 C 0.054 3.946 19 N -0.897 5.897 20 Si 0.892 3.108 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.285 1.285 24 H 0.067 0.933 25 H 0.059 0.941 26 H 0.057 0.943 27 H 0.072 0.928 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.056 0.944 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.080 0.920 34 H 0.029 0.971 35 H 0.029 0.971 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.059 0.941 39 H 0.022 0.978 40 H 0.069 0.931 41 H 0.336 0.664 42 H 0.066 0.934 43 H 0.023 0.977 44 H 0.044 0.956 45 H 0.056 0.944 46 H 0.016 0.984 47 H 0.013 0.987 48 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.617 2.296 28.756 29.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.027 4.027 3 H 0.055 0.945 4 C -0.149 4.149 5 C -0.160 4.160 6 C -0.155 4.155 7 C -0.076 4.076 8 N -0.257 5.257 9 C -0.076 4.076 10 C -0.150 4.150 11 C -0.071 4.071 12 N -0.322 5.322 13 C -0.069 4.069 14 C -0.145 4.145 15 C -0.017 4.017 16 C -0.555 4.555 17 H 0.074 0.926 18 C -0.147 4.147 19 N -0.537 5.537 20 Si 0.720 3.280 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.211 1.211 24 H 0.086 0.914 25 H 0.078 0.922 26 H 0.076 0.924 27 H 0.090 0.910 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.090 0.910 32 H 0.083 0.917 33 H 0.098 0.902 34 H 0.047 0.953 35 H 0.048 0.952 36 H 0.100 0.900 37 H 0.098 0.902 38 H 0.077 0.923 39 H 0.041 0.959 40 H 0.088 0.912 41 H 0.153 0.847 42 H 0.085 0.915 43 H 0.041 0.959 44 H 0.063 0.937 45 H 0.075 0.925 46 H 0.034 0.966 47 H 0.032 0.968 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 4.839 1.493 28.767 29.209 hybrid contribution 1.048 1.173 -1.139 1.942 sum 5.888 2.666 27.627 28.373 Atomic orbital electron populations 1.21938 0.94315 1.02862 1.01610 1.21596 0.95393 0.95230 0.90502 0.94547 1.21629 0.95416 1.01540 0.96327 1.21589 0.95910 1.00538 0.97944 1.21588 0.99626 1.00381 0.93913 1.22145 0.87476 0.98726 0.99233 1.61952 1.06959 1.55043 1.01732 1.22167 1.00433 0.95654 0.89335 1.21562 1.00712 1.00327 0.92436 1.21889 1.00728 0.93878 0.90583 1.60531 1.18554 1.49412 1.03680 1.22123 0.99529 0.96393 0.88891 1.21624 0.99952 0.98498 0.94428 1.19078 0.96105 0.96112 0.90364 1.21306 1.33616 1.08130 0.92487 0.92595 1.25045 0.95273 0.95344 0.99000 1.69982 1.37304 1.24723 1.21650 0.86532 0.78113 0.80872 0.82469 1.19714 1.21024 1.21077 0.91433 0.92245 0.92445 0.90976 0.91752 0.91862 0.92480 0.90987 0.91677 0.90204 0.95257 0.95233 0.90041 0.90213 0.92277 0.95949 0.91222 0.84667 0.91527 0.95901 0.93695 0.92534 0.96563 0.96839 0.93123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 8.53 37.16 0.32 -0.78 16 2 C 0.08 0.66 2.44 -67.72 -0.17 0.49 16 3 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 4 C -0.11 -0.78 5.37 -26.65 -0.14 -0.93 16 5 C -0.12 -0.82 6.00 -26.61 -0.16 -0.98 16 6 C -0.12 -0.86 6.09 -26.64 -0.16 -1.03 16 7 C 0.05 0.45 5.29 -3.83 -0.02 0.43 16 8 N -0.53 -4.89 4.49 -226.68 -1.02 -5.90 16 9 C 0.05 0.50 4.69 -3.82 -0.02 0.48 16 10 C -0.11 -1.19 5.41 -26.73 -0.14 -1.34 16 11 C 0.06 0.74 5.69 -3.82 -0.02 0.72 16 12 N -0.69 -10.49 6.50 -113.78 -0.74 -11.23 16 13 C 0.06 1.06 5.69 -3.82 -0.02 1.04 16 14 C -0.11 -2.29 5.41 -26.73 -0.14 -2.43 16 15 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 16 C -0.52 -15.03 9.11 -34.44 -0.31 -15.34 16 17 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 18 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 19 N -0.90 -27.46 13.29 55.43 0.74 -26.73 16 20 Si 0.89 22.05 29.54 -169.99 -5.02 17.03 16 21 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 23 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 24 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.06 0.36 8.13 -51.93 -0.42 -0.06 16 26 H 0.06 0.43 6.56 -51.93 -0.34 0.09 16 27 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.08 0.71 6.23 -51.93 -0.32 0.38 16 34 H 0.03 0.26 8.14 -51.93 -0.42 -0.17 16 35 H 0.03 0.29 8.12 -51.93 -0.42 -0.14 16 36 H 0.08 0.76 5.80 -51.93 -0.30 0.46 16 37 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.06 0.62 6.44 -51.93 -0.33 0.28 16 39 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 40 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.34 4.78 8.73 -39.29 -0.34 4.43 16 42 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 43 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 45 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 46 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 48 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 367.92 15.07 5.54 5.54 Total: -1.00 -30.29 367.92 -11.37 -41.66 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: -9.64 Total: -2.60 kcal Atomic # 6 Polarization: -16.53 SS G_CDS: -1.23 Total: -17.77 kcal Atomic # 7 Polarization: -42.84 SS G_CDS: -1.02 Total: -43.86 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -30.29 -11.37 -41.66 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042225910.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.151 kcal (2) G-P(sol) polarization free energy of solvation -30.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds