Wall clock time and date at job start Mon Mar 30 2020 08:32:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.45808 * 2 1 4 4 C 1.53037 * 109.46414 * 119.97174 * 2 1 3 5 5 C 1.53112 * 109.28068 * 179.19673 * 4 2 1 6 6 C 1.53127 * 109.16178 * 302.34153 * 5 4 2 7 7 C 1.53042 * 109.27150 * 57.65552 * 6 5 4 8 8 N 1.46848 * 109.46218 * 240.02198 * 2 1 3 9 9 C 1.46905 * 111.00110 * 54.14984 * 8 2 1 10 10 C 1.52995 * 109.47155 * 190.49264 * 9 8 2 11 11 C 1.53009 * 109.47045 * 179.97438 * 10 9 8 12 12 N 1.46899 * 109.46888 * 179.97438 * 11 10 9 13 13 C 1.46903 * 110.99355 * 179.97438 * 12 11 10 14 14 C 1.53003 * 109.46510 * 180.02562 * 13 12 11 15 15 C 1.53007 * 109.46685 * 179.97438 * 14 13 12 16 16 C 1.50706 * 109.46818 * 179.97438 * 15 14 13 17 17 H 1.07997 * 120.00010 * 0.02562 * 16 15 14 18 18 C 1.37873 * 119.99829 * 179.97438 * 16 15 14 19 19 N 1.31518 * 119.99972 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00062 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47272 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.47023 * 120.00255 * 20 18 16 23 23 H 1.48502 * 109.47057 * 240.00217 * 20 18 16 24 24 H 1.09004 * 109.46920 * 172.47375 * 1 2 3 25 25 H 1.08999 * 109.47130 * 292.47347 * 1 2 3 26 26 H 1.08999 * 109.47150 * 52.47784 * 1 2 3 27 27 H 1.09000 * 109.50456 * 59.25325 * 4 2 1 28 28 H 1.09003 * 109.53204 * 299.15891 * 4 2 1 29 29 H 1.09001 * 109.52441 * 182.44118 * 5 4 2 30 30 H 1.08998 * 109.52883 * 62.24575 * 5 4 2 31 31 H 1.08997 * 109.50098 * 297.71956 * 6 5 4 32 32 H 1.08995 * 109.53646 * 177.61621 * 6 5 4 33 33 H 1.09007 * 109.45874 * 180.80450 * 7 6 5 34 34 H 1.08997 * 109.45588 * 60.83771 * 7 6 5 35 35 H 1.09001 * 109.47163 * 70.48540 * 9 8 2 36 36 H 1.09006 * 109.46777 * 310.48684 * 9 8 2 37 37 H 1.08992 * 109.47720 * 59.99804 * 10 9 8 38 38 H 1.09006 * 109.46804 * 299.99403 * 10 9 8 39 39 H 1.09001 * 109.47057 * 59.99408 * 11 10 9 40 40 H 1.08995 * 109.46621 * 299.99859 * 11 10 9 41 41 H 1.00901 * 111.00158 * 303.94760 * 12 11 10 42 42 H 1.08994 * 109.47398 * 299.99392 * 13 12 11 43 43 H 1.08996 * 109.47256 * 60.00284 * 13 12 11 44 44 H 1.08994 * 109.47282 * 299.99598 * 14 13 12 45 45 H 1.08999 * 109.47599 * 60.00446 * 14 13 12 46 46 H 1.08994 * 109.46939 * 299.99817 * 15 14 13 47 47 H 1.08996 * 109.47161 * 60.00214 * 15 14 13 48 48 H 0.97000 * 119.99945 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0400 -0.7208 1.2500 5 6 3.5709 -0.7360 1.2356 6 6 4.0549 -1.4189 -0.0467 7 6 3.4865 -0.6777 -1.2590 8 7 2.0193 -0.6918 -1.1993 9 6 1.4374 -0.1107 -2.4166 10 6 1.7565 -1.0088 -3.6134 11 6 1.1498 -0.4037 -4.8811 12 7 1.4568 -1.2658 -6.0303 13 6 0.8881 -0.7152 -7.2679 14 6 1.2274 -1.6386 -8.4398 15 6 0.6346 -1.0656 -9.7287 16 6 0.9692 -1.9748 -10.8831 17 1 1.5465 -2.8718 -10.7142 18 6 0.5375 -1.6620 -12.1545 19 7 -0.1659 -0.5699 -12.3601 20 14 0.9516 -2.7893 -13.5853 21 1 1.7463 -3.9429 -13.0927 22 1 -0.3039 -3.2827 -14.2062 23 1 1.7412 -2.0386 -14.5945 24 1 -0.3633 -1.0189 -0.1346 25 1 -0.3633 0.3928 0.9496 26 1 -0.3633 0.6259 -0.8150 27 1 1.6660 -1.7446 1.2577 28 1 1.6895 -0.1987 2.1403 29 1 3.9379 -1.2862 2.1020 30 1 3.9457 0.2871 1.2671 31 1 3.7125 -2.4536 -0.0593 32 1 5.1439 -1.3953 -0.0834 33 1 3.8175 -1.1700 -2.1736 34 1 3.8404 0.3532 -1.2530 35 1 1.8590 0.8806 -2.5834 36 1 0.3565 -0.0309 -2.3002 37 1 1.3349 -1.9999 -3.4466 38 1 2.8374 -1.0885 -3.7298 39 1 1.5711 0.5876 -5.0481 40 1 0.0691 -0.3243 -4.7644 41 1 2.4517 -1.4072 -6.1208 42 1 -0.1945 -0.6387 -7.1678 43 1 1.3070 0.2742 -7.4515 44 1 2.3099 -1.7156 -8.5401 45 1 0.8082 -2.6279 -8.2560 46 1 -0.4480 -0.9890 -9.6280 47 1 1.0534 -0.0762 -9.9127 48 1 -0.4700 -0.3500 -13.2545 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042225910.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:32:33 Heat of formation + Delta-G solvation = -51.832631 kcal Electronic energy + Delta-G solvation = -20182.838546 eV Core-core repulsion = 17270.127512 eV Total energy + Delta-G solvation = -2912.711033 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.35809 -38.06517 -36.01000 -34.98370 -33.69777 -33.14072 -31.11205 -28.31963 -27.80335 -25.99057 -24.46152 -23.48074 -22.37052 -22.09800 -21.43800 -20.56040 -18.48801 -17.20510 -16.99285 -16.56394 -16.37561 -15.81853 -15.54258 -15.28387 -15.26028 -14.93723 -14.71830 -14.25148 -14.16399 -13.81771 -13.35803 -13.28995 -12.97427 -12.85609 -12.74300 -12.69554 -12.56526 -12.40408 -12.34466 -12.15259 -11.90718 -11.77946 -11.57303 -11.49649 -11.37764 -11.14808 -11.06098 -10.98799 -10.56454 -9.37953 -9.24271 -8.20732 -6.31798 1.39861 1.40409 1.54183 2.40814 2.80760 3.12210 3.31767 3.84237 3.86706 3.93876 4.05777 4.17069 4.18626 4.33593 4.35573 4.36232 4.45421 4.48380 4.53868 4.60522 4.67503 4.70963 4.71727 4.76259 4.89190 4.92093 4.96744 4.99080 5.06979 5.08139 5.11177 5.21754 5.24342 5.25710 5.27850 5.34585 5.35594 5.51564 5.52233 5.74302 5.85294 6.05261 6.18887 6.23645 6.26992 6.48859 6.85279 7.37426 8.91451 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.048209 B = 0.002208 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.665622 B =12677.420671 C =13052.103799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.078 3.922 3 H 0.033 0.967 4 C -0.109 4.109 5 C -0.121 4.121 6 C -0.115 4.115 7 C 0.050 3.950 8 N -0.540 5.540 9 C 0.057 3.943 10 C -0.099 4.099 11 C 0.062 3.938 12 N -0.693 5.693 13 C 0.072 3.928 14 C -0.093 4.093 15 C 0.024 3.976 16 C -0.542 4.542 17 H 0.060 0.940 18 C -0.004 4.004 19 N -0.934 5.934 20 Si 0.968 3.032 21 H -0.262 1.262 22 H -0.277 1.277 23 H -0.277 1.277 24 H 0.059 0.941 25 H 0.072 0.928 26 H 0.054 0.946 27 H 0.065 0.935 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.027 0.973 35 H 0.029 0.971 36 H 0.083 0.917 37 H 0.068 0.932 38 H 0.062 0.938 39 H 0.027 0.973 40 H 0.068 0.932 41 H 0.344 0.656 42 H 0.061 0.939 43 H 0.022 0.978 44 H 0.051 0.949 45 H 0.052 0.948 46 H -0.009 1.009 47 H -0.009 1.009 48 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.454 1.678 29.669 30.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.030 4.030 3 H 0.051 0.949 4 C -0.147 4.147 5 C -0.159 4.159 6 C -0.153 4.153 7 C -0.078 4.078 8 N -0.265 5.265 9 C -0.071 4.071 10 C -0.137 4.137 11 C -0.068 4.068 12 N -0.325 5.325 13 C -0.057 4.057 14 C -0.131 4.131 15 C -0.014 4.014 16 C -0.580 4.580 17 H 0.078 0.922 18 C -0.201 4.201 19 N -0.575 5.575 20 Si 0.792 3.208 21 H -0.186 1.186 22 H -0.203 1.203 23 H -0.203 1.203 24 H 0.078 0.922 25 H 0.091 0.909 26 H 0.073 0.927 27 H 0.083 0.917 28 H 0.095 0.905 29 H 0.092 0.908 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.045 0.955 35 H 0.047 0.953 36 H 0.102 0.898 37 H 0.087 0.913 38 H 0.081 0.919 39 H 0.046 0.954 40 H 0.086 0.914 41 H 0.162 0.838 42 H 0.079 0.921 43 H 0.040 0.960 44 H 0.069 0.931 45 H 0.071 0.929 46 H 0.010 0.990 47 H 0.009 0.991 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.687 0.871 29.705 30.257 hybrid contribution 0.777 1.396 -1.387 2.115 sum 6.464 2.267 28.318 29.135 Atomic orbital electron populations 1.21915 0.93855 1.02374 1.02288 1.21673 0.95807 0.95040 0.90454 0.94904 1.21625 0.95670 1.01126 0.96279 1.21591 0.95647 1.00682 0.97934 1.21579 1.00200 0.99778 0.93762 1.22177 0.87203 0.98705 0.99672 1.61969 1.07353 1.55301 1.01908 1.22078 1.00627 0.95243 0.89176 1.21408 1.00632 0.99734 0.91956 1.21921 1.00884 0.93788 0.90203 1.60454 1.19073 1.49871 1.03061 1.21829 0.99369 0.95487 0.89032 1.21380 0.99782 0.98564 0.93342 1.18987 0.94641 0.95046 0.92698 1.21732 1.33924 1.08677 0.93683 0.92212 1.26029 0.94921 0.96979 1.02208 1.70109 1.38182 1.26517 1.22650 0.85359 0.78159 0.78835 0.78447 1.18584 1.20310 1.20257 0.92218 0.90904 0.92694 0.91660 0.90456 0.90817 0.92340 0.91716 0.90682 0.90678 0.95469 0.95280 0.89847 0.91319 0.91893 0.95446 0.91357 0.83849 0.92083 0.95961 0.93057 0.92912 0.99026 0.99068 0.92757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 8.53 71.98 0.61 -1.37 16 2 C 0.08 1.17 2.44 44.94 0.11 1.28 16 3 H 0.03 0.52 8.14 -2.39 -0.02 0.50 16 4 C -0.11 -1.37 5.37 30.64 0.16 -1.21 16 5 C -0.12 -1.42 6.00 30.67 0.18 -1.24 16 6 C -0.12 -1.55 6.09 30.65 0.19 -1.37 16 7 C 0.05 0.81 5.29 86.33 0.46 1.27 16 8 N -0.54 -9.39 4.49 -871.08 -3.91 -13.30 16 9 C 0.06 1.03 4.69 86.30 0.40 1.43 16 10 C -0.10 -2.01 5.41 30.60 0.17 -1.84 16 11 C 0.06 1.48 5.69 86.31 0.49 1.97 16 12 N -0.69 -20.31 6.50 -513.88 -3.34 -23.65 16 13 C 0.07 2.57 5.69 86.30 0.49 3.06 16 14 C -0.09 -3.97 5.41 30.60 0.17 -3.80 16 15 C 0.02 1.30 4.97 29.85 0.15 1.45 16 16 C -0.54 -31.75 9.11 25.60 0.23 -31.52 16 17 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 18 C 0.00 -0.23 5.46 84.65 0.46 0.23 16 19 N -0.93 -57.90 13.29 21.45 0.28 -57.61 16 20 Si 0.97 45.08 29.54 68.60 2.03 47.10 16 21 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 22 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 23 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 24 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 25 H 0.07 0.78 8.13 -2.39 -0.02 0.76 16 26 H 0.05 0.76 6.56 -2.39 -0.02 0.74 16 27 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.07 1.26 6.23 -2.38 -0.01 1.24 16 34 H 0.03 0.45 8.14 -2.39 -0.02 0.43 16 35 H 0.03 0.53 8.12 -2.39 -0.02 0.51 16 36 H 0.08 1.47 5.80 -2.38 -0.01 1.46 16 37 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.06 1.23 6.44 -2.38 -0.02 1.22 16 39 H 0.03 0.64 8.14 -2.39 -0.02 0.62 16 40 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 41 H 0.34 9.28 8.73 -89.69 -0.78 8.50 16 42 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 43 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 44 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 45 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 46 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 47 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 48 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 Total: -1.00 -64.20 367.92 -0.57 -64.77 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: 0.10 Total: 14.37 kcal Atomic # 6 Polarization: -35.94 SS G_CDS: 4.28 Total: -31.67 kcal Atomic # 7 Polarization: -87.60 SS G_CDS: -6.97 Total: -94.57 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.10 kcal Total: -64.20 -0.57 -64.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042225910.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.935 kcal (2) G-P(sol) polarization free energy of solvation -64.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds