Wall clock time and date at job start Mon Mar 30 2020 07:15:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47215 * 2 1 4 4 N 1.46897 * 109.47016 * 120.00013 * 2 1 3 5 5 C 1.46906 * 110.99968 * 155.00165 * 4 2 1 6 6 C 1.53000 * 109.47392 * 179.97438 * 5 4 2 7 7 H 1.08997 * 109.53219 * 305.10258 * 6 5 4 8 8 C 1.53123 * 109.49034 * 65.20026 * 6 5 4 9 9 C 1.53127 * 109.15019 * 177.60705 * 8 6 5 10 10 C 1.53042 * 109.27596 * 302.34079 * 9 8 6 11 11 N 1.46843 * 109.52278 * 59.17923 * 10 9 8 12 12 C 1.46895 * 110.99970 * 174.15687 * 11 10 9 13 13 C 1.53000 * 109.47597 * 314.21160 * 12 11 10 14 14 C 1.52993 * 109.47683 * 179.97438 * 13 12 11 15 15 C 1.50701 * 109.47128 * 179.97438 * 14 13 12 16 16 H 1.07996 * 120.00239 * 359.97438 * 15 14 13 17 17 C 1.37876 * 119.99734 * 180.02562 * 15 14 13 18 18 N 1.31519 * 120.00334 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99803 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47236 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47297 * 119.99956 * 19 17 15 22 22 H 1.48503 * 109.47212 * 239.99811 * 19 17 15 23 23 C 1.46847 * 111.20124 * 298.25596 * 11 10 9 24 24 H 1.08997 * 109.47230 * 300.00106 * 1 2 3 25 25 H 1.09000 * 109.47413 * 60.00168 * 1 2 3 26 26 H 1.09003 * 109.46783 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.47196 * 239.99970 * 2 1 3 28 28 H 1.08998 * 109.47046 * 180.02562 * 3 2 1 29 29 H 1.09000 * 109.46793 * 300.00212 * 3 2 1 30 30 H 1.08997 * 109.47108 * 59.99819 * 3 2 1 31 31 H 1.00892 * 111.00291 * 31.05175 * 4 2 1 32 32 H 1.09001 * 109.47372 * 59.99553 * 5 4 2 33 33 H 1.09003 * 109.47260 * 300.00051 * 5 4 2 34 34 H 1.09003 * 109.53012 * 57.70277 * 8 6 5 35 35 H 1.08997 * 109.57453 * 297.53555 * 8 6 5 36 36 H 1.08997 * 109.49981 * 182.39822 * 9 8 6 37 37 H 1.08999 * 109.50124 * 62.28085 * 9 8 6 38 38 H 1.08993 * 109.46299 * 299.16259 * 10 9 8 39 39 H 1.09004 * 109.45702 * 179.19362 * 10 9 8 40 40 H 1.08997 * 109.47358 * 74.21117 * 12 11 10 41 41 H 1.09001 * 109.47788 * 194.20927 * 12 11 10 42 42 H 1.09007 * 109.46763 * 300.00403 * 13 12 11 43 43 H 1.09001 * 109.46741 * 59.99127 * 13 12 11 44 44 H 1.08997 * 109.47067 * 300.00374 * 14 13 12 45 45 H 1.09003 * 109.46810 * 60.00071 * 14 13 12 46 46 H 0.96999 * 119.99770 * 179.97438 * 18 17 15 47 47 H 1.09002 * 109.46481 * 181.76055 * 23 11 10 48 48 H 1.08994 * 109.46283 * 301.73908 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 3.3670 -1.2354 0.9807 6 6 3.8423 -1.9471 2.2490 7 1 3.7805 -1.2633 3.0955 8 6 2.9564 -3.1680 2.5121 9 6 3.4751 -3.9080 3.7483 10 6 4.9348 -4.3082 3.5220 11 7 5.7408 -3.1058 3.2751 12 6 7.1692 -3.4377 3.1908 13 6 7.5436 -4.3761 4.3397 14 6 9.0312 -4.7223 4.2516 15 6 9.3999 -5.6462 5.3837 16 1 8.6485 -5.9552 6.0951 17 6 10.6969 -6.0961 5.5117 18 7 11.6122 -5.7194 4.6456 19 14 11.1538 -7.2419 6.9146 20 1 9.9520 -7.5132 7.7435 21 1 11.6730 -8.5187 6.3618 22 1 12.1998 -6.6042 7.7539 23 6 5.2912 -2.4043 2.0659 24 1 -0.3633 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5139 -0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8899 31 1 1.3794 -1.4182 1.4847 32 1 4.0524 -0.4220 0.7425 33 1 3.3432 -1.9444 0.1530 34 1 2.9875 -3.8336 1.6494 35 1 1.9302 -2.8440 2.6855 36 1 2.8744 -4.8019 3.9160 37 1 3.4075 -3.2549 4.6183 38 1 4.9999 -4.9723 2.6602 39 1 5.3115 -4.8227 4.4061 40 1 7.3726 -3.9291 2.2394 41 1 7.7594 -2.5239 3.2611 42 1 7.3402 -3.8847 5.2912 43 1 6.9534 -5.2899 4.2694 44 1 9.2341 -5.2138 3.3001 45 1 9.6216 -3.8087 4.3217 46 1 12.5247 -6.0357 4.7360 47 1 5.9268 -1.5359 1.8923 48 1 5.3544 -3.0773 1.2109 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063138900.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:15:59 Heat of formation + Delta-G solvation = -48.395966 kcal Electronic energy + Delta-G solvation = -20746.272593 eV Core-core repulsion = 17833.710585 eV Total energy + Delta-G solvation = -2912.562008 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.42348 -38.29665 -36.39570 -34.95753 -33.26052 -32.53341 -30.62538 -28.36113 -28.13477 -26.27355 -25.24087 -23.63708 -22.86110 -21.41724 -21.01922 -20.56243 -18.51024 -17.05600 -16.76108 -16.51140 -16.38834 -16.24899 -15.55788 -15.21327 -14.98614 -14.87756 -14.62359 -14.32932 -13.88719 -13.61778 -13.41389 -13.32672 -13.16702 -13.02801 -12.89494 -12.71052 -12.49476 -12.29122 -12.22476 -12.19531 -11.93224 -11.77593 -11.63903 -11.47940 -11.37319 -11.28975 -11.06783 -10.90922 -10.56308 -9.35724 -9.23118 -8.21177 -6.32307 1.39254 1.39797 1.53410 2.40098 2.86334 3.11824 3.29899 3.78786 3.87422 3.96968 4.06886 4.15237 4.20306 4.25827 4.34701 4.45484 4.48192 4.50753 4.55355 4.63372 4.66757 4.68380 4.79254 4.83661 4.91940 4.95237 4.98697 4.99756 5.02396 5.04747 5.11980 5.14902 5.19590 5.24891 5.32123 5.37365 5.43117 5.49696 5.53336 5.72135 5.83721 6.10201 6.14504 6.23642 6.28377 6.52725 6.84518 7.36918 8.91049 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.049039 B = 0.002697 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 570.842376 B =10378.909987 C =10793.008264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.074 3.926 3 C -0.139 4.139 4 N -0.690 5.690 5 C 0.074 3.926 6 C -0.072 4.072 7 H 0.076 0.924 8 C -0.110 4.110 9 C -0.110 4.110 10 C 0.045 3.955 11 N -0.542 5.542 12 C 0.067 3.933 13 C -0.094 4.094 14 C 0.025 3.975 15 C -0.541 4.541 16 H 0.059 0.941 17 C -0.003 4.003 18 N -0.934 5.934 19 Si 0.967 3.033 20 H -0.262 1.262 21 H -0.277 1.277 22 H -0.277 1.277 23 C 0.061 3.939 24 H 0.061 0.939 25 H 0.071 0.929 26 H 0.058 0.942 27 H 0.039 0.961 28 H 0.043 0.957 29 H 0.065 0.935 30 H 0.055 0.945 31 H 0.345 0.655 32 H 0.067 0.933 33 H 0.030 0.970 34 H 0.056 0.944 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.066 0.934 38 H 0.024 0.976 39 H 0.071 0.929 40 H 0.022 0.978 41 H 0.066 0.934 42 H 0.053 0.947 43 H 0.055 0.945 44 H -0.011 1.011 45 H -0.009 1.009 46 H 0.264 0.736 47 H 0.071 0.929 48 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.626 9.736 -9.449 27.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.036 4.036 3 C -0.197 4.197 4 N -0.323 5.323 5 C -0.056 4.056 6 C -0.091 4.091 7 H 0.094 0.906 8 C -0.148 4.148 9 C -0.147 4.147 10 C -0.083 4.083 11 N -0.266 5.266 12 C -0.061 4.061 13 C -0.132 4.132 14 C -0.012 4.012 15 C -0.579 4.579 16 H 0.078 0.922 17 C -0.201 4.201 18 N -0.574 5.574 19 Si 0.791 3.209 20 H -0.186 1.186 21 H -0.203 1.203 22 H -0.203 1.203 23 C -0.067 4.067 24 H 0.081 0.919 25 H 0.089 0.911 26 H 0.077 0.923 27 H 0.057 0.943 28 H 0.063 0.937 29 H 0.084 0.916 30 H 0.074 0.926 31 H 0.165 0.835 32 H 0.086 0.914 33 H 0.048 0.952 34 H 0.075 0.925 35 H 0.100 0.900 36 H 0.098 0.902 37 H 0.085 0.915 38 H 0.042 0.958 39 H 0.090 0.910 40 H 0.040 0.960 41 H 0.085 0.915 42 H 0.071 0.929 43 H 0.073 0.927 44 H 0.008 0.992 45 H 0.010 0.990 46 H 0.072 0.928 47 H 0.090 0.910 48 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -23.308 10.615 -8.809 27.084 hybrid contribution 1.000 -1.846 -0.749 2.229 sum -22.308 8.768 -9.557 25.805 Atomic orbital electron populations 1.21935 0.93547 1.02327 1.02922 1.21570 0.95686 0.95414 0.90881 1.21784 1.00532 0.95449 1.01890 1.60527 1.03550 1.33449 1.34783 1.21856 0.91072 0.97227 0.95457 1.21060 0.92685 0.96972 0.98356 0.90560 1.21614 0.99466 0.96079 0.97602 1.21551 0.93560 1.00838 0.98800 1.22263 0.94646 0.91045 1.00319 1.61983 1.02356 1.24824 1.37473 1.22018 0.88413 0.98646 0.96984 1.21531 0.96510 0.97687 0.97468 1.18977 0.92152 0.94827 0.95267 1.21702 0.95072 1.28793 1.12304 0.92229 1.26020 0.96570 0.98321 0.99155 1.70110 1.02917 1.46438 1.37981 0.85370 0.78441 0.78267 0.78797 1.18553 1.20283 1.20300 1.22102 0.96804 0.97866 0.89972 0.91949 0.91053 0.92304 0.94264 0.93737 0.91572 0.92558 0.83488 0.91434 0.95231 0.92477 0.90035 0.90191 0.91529 0.95795 0.91023 0.96020 0.91510 0.92869 0.92676 0.99246 0.99024 0.92757 0.91034 0.95469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.18 71.98 0.66 -0.89 16 2 C 0.07 1.01 3.22 44.92 0.14 1.15 16 3 C -0.14 -1.93 9.41 71.98 0.68 -1.25 16 4 N -0.69 -10.77 6.31 -491.55 -3.10 -13.87 16 5 C 0.07 1.29 4.94 86.30 0.43 1.71 16 6 C -0.07 -1.46 2.56 -10.74 -0.03 -1.48 16 7 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 8 C -0.11 -1.99 5.00 30.68 0.15 -1.84 16 9 C -0.11 -2.36 6.09 30.65 0.19 -2.17 16 10 C 0.04 1.27 4.85 86.33 0.42 1.69 16 11 N -0.54 -16.67 4.80 -896.39 -4.31 -20.97 16 12 C 0.07 2.46 5.27 86.30 0.46 2.92 16 13 C -0.09 -4.06 4.40 30.59 0.13 -3.93 16 14 C 0.03 1.39 4.97 29.85 0.15 1.54 16 15 C -0.54 -31.61 9.11 25.60 0.23 -31.37 16 16 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 17 C 0.00 -0.19 5.46 84.65 0.46 0.28 16 18 N -0.93 -57.93 13.29 21.45 0.28 -57.65 16 19 Si 0.97 45.03 29.54 68.60 2.03 47.06 16 20 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 21 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 22 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 23 C 0.06 1.54 4.71 86.32 0.41 1.95 16 24 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 25 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 26 H 0.06 0.55 8.12 -2.39 -0.02 0.53 16 27 H 0.04 0.56 7.80 -2.38 -0.02 0.54 16 28 H 0.04 0.69 7.45 -2.39 -0.02 0.68 16 29 H 0.07 0.73 8.14 -2.39 -0.02 0.72 16 30 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.35 4.72 6.67 -89.70 -0.60 4.12 16 32 H 0.07 1.26 7.44 -2.39 -0.02 1.24 16 33 H 0.03 0.51 8.06 -2.39 -0.02 0.49 16 34 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.08 1.19 6.80 -2.39 -0.02 1.17 16 36 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 39 H 0.07 2.24 5.81 -2.38 -0.01 2.22 16 40 H 0.02 0.81 8.08 -2.39 -0.02 0.79 16 41 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 42 H 0.05 2.31 8.14 -2.38 -0.02 2.29 16 43 H 0.05 2.31 6.21 -2.39 -0.01 2.29 16 44 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 45 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 46 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 47 H 0.07 1.81 8.12 -2.39 -0.02 1.79 16 48 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16 Total: -1.00 -64.28 365.04 -0.33 -64.61 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: 0.28 Total: 12.52 kcal Atomic # 6 Polarization: -36.18 SS G_CDS: 4.48 Total: -31.70 kcal Atomic # 7 Polarization: -85.37 SS G_CDS: -7.12 Total: -92.49 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -64.28 -0.33 -64.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063138900.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.214 kcal (2) G-P(sol) polarization free energy of solvation -64.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds