Wall clock time and date at job start Mon Mar 30 2020 07:14:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53000 * 109.47219 * 2 1 4 4 N 1.46898 * 109.47591 * 180.02562 * 3 2 1 5 5 C 1.46899 * 111.00515 * 179.97438 * 4 3 2 6 6 C 1.52997 * 109.47081 * 185.68054 * 5 4 3 7 7 H 1.09006 * 109.46220 * 308.53615 * 6 5 4 8 8 C 1.53045 * 109.46008 * 188.56359 * 6 5 4 9 9 C 1.53114 * 109.27720 * 180.81729 * 8 6 5 10 10 C 1.53119 * 109.16255 * 57.64969 * 9 8 6 11 11 C 1.53038 * 109.27905 * 302.34399 * 10 9 8 12 12 N 1.46846 * 109.52144 * 59.18369 * 11 10 9 13 13 C 1.46895 * 111.00200 * 174.16162 * 12 11 10 14 14 C 1.52998 * 109.47254 * 64.33599 * 13 12 11 15 15 C 1.52997 * 109.47263 * 175.12710 * 14 13 12 16 16 C 1.50695 * 109.47302 * 179.97438 * 15 14 13 17 17 H 1.07998 * 120.00114 * 0.02562 * 16 15 14 18 18 C 1.37882 * 120.00022 * 179.97438 * 16 15 14 19 19 N 1.31515 * 120.00265 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 120.00031 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.46695 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.46822 * 120.00291 * 20 18 16 23 23 H 1.48499 * 109.46866 * 240.00359 * 20 18 16 24 24 H 1.09001 * 109.47372 * 300.00485 * 1 2 3 25 25 H 1.09001 * 109.47384 * 59.99674 * 1 2 3 26 26 H 1.09001 * 109.47470 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47561 * 240.00272 * 2 1 3 28 28 H 1.09001 * 109.47395 * 119.99539 * 2 1 3 29 29 H 1.09005 * 109.47095 * 59.99934 * 3 2 1 30 30 H 1.09001 * 109.47067 * 299.99898 * 3 2 1 31 31 H 1.00901 * 110.99761 * 303.95806 * 4 3 2 32 32 H 1.09003 * 109.46888 * 65.67766 * 5 4 3 33 33 H 1.08992 * 109.47052 * 305.68128 * 5 4 3 34 34 H 1.09003 * 109.49970 * 300.75155 * 8 6 5 35 35 H 1.08991 * 109.50711 * 60.83345 * 8 6 5 36 36 H 1.09001 * 109.52533 * 177.55612 * 9 8 6 37 37 H 1.09005 * 109.52391 * 297.68442 * 9 8 6 38 38 H 1.09000 * 109.50336 * 62.29263 * 10 9 8 39 39 H 1.09003 * 109.50196 * 182.40178 * 10 9 8 40 40 H 1.08997 * 109.45906 * 179.19228 * 11 10 9 41 41 H 1.09001 * 109.46342 * 299.16588 * 11 10 9 42 42 H 1.08995 * 109.47302 * 184.34072 * 13 12 11 43 43 H 1.09002 * 109.46751 * 304.33833 * 13 12 11 44 44 H 1.09006 * 109.47118 * 295.12471 * 14 13 12 45 45 H 1.08996 * 109.47276 * 55.12437 * 14 13 12 46 46 H 1.08998 * 109.47117 * 300.00099 * 15 14 13 47 47 H 1.09004 * 109.47164 * 60.00037 * 15 14 13 48 48 H 0.97001 * 120.00098 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5089 1.4426 -0.0006 5 6 4.0354 2.8140 -0.0013 6 6 5.5581 2.7756 -0.1447 7 1 5.9762 2.0985 0.6003 8 6 6.1259 4.1809 0.0680 9 6 7.6476 4.1415 -0.0966 10 6 7.9889 3.5992 -1.4872 11 6 7.3673 2.2108 -1.6547 12 7 5.9110 2.3020 -1.4891 13 6 5.2665 1.0144 -1.7796 14 6 5.7216 -0.0265 -0.7547 15 6 4.9595 -1.3335 -0.9822 16 6 5.4082 -2.3588 0.0268 17 1 6.1613 -2.1037 0.7576 18 6 4.8564 -3.6224 0.0177 19 7 3.9389 -3.9330 -0.8719 20 14 5.4122 -4.8933 1.2690 21 1 6.4464 -4.2981 2.1530 22 1 4.2500 -5.3234 2.0873 23 1 5.9815 -6.0683 0.5616 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6766 1.9563 -0.8900 31 1 3.8708 0.9163 0.7805 32 1 3.7708 3.3051 0.9352 33 1 3.6057 3.3677 -0.8359 34 1 5.6978 4.8615 -0.6680 35 1 5.8766 4.5262 1.0713 36 1 8.0519 5.1480 0.0112 37 1 8.0797 3.4920 0.6648 38 1 7.5902 4.2707 -2.2476 39 1 9.0713 3.5286 -1.5947 40 1 7.5964 1.8279 -2.6491 41 1 7.7768 1.5364 -0.9027 42 1 4.1840 1.1293 -1.7246 43 1 5.5465 0.6855 -2.7804 44 1 6.7909 -0.2049 -0.8684 45 1 5.5196 0.3415 0.2512 46 1 3.8902 -1.1550 -0.8686 47 1 5.1615 -1.7015 -1.9881 48 1 3.5511 -4.8221 -0.8785 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000111701996.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:14 Heat of formation + Delta-G solvation = -15.024841 kcal Electronic energy + Delta-G solvation = -22357.900285 eV Core-core repulsion = 19446.785358 eV Total energy + Delta-G solvation = -2911.114928 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.48055 -36.31159 -34.42052 -33.12788 -32.61191 -30.53481 -30.36426 -26.71687 -25.93521 -24.05307 -23.14720 -22.21519 -21.19512 -20.72534 -20.41642 -18.48698 -16.40598 -16.04954 -15.28514 -14.85911 -14.68891 -14.51813 -14.32014 -14.02957 -13.71634 -13.45256 -12.93554 -12.80255 -12.60264 -12.04407 -12.00177 -11.83244 -11.68389 -11.56977 -11.26130 -11.01156 -10.93654 -10.76409 -10.71739 -10.54311 -10.47950 -10.42124 -10.26882 -10.12273 -9.92422 -9.31680 -9.21014 -8.97654 -8.22754 -7.75572 -7.51581 -5.89843 -3.90403 3.33598 3.41616 3.45258 4.35608 4.43068 4.52959 4.94396 5.03171 5.09237 5.29539 5.40831 5.41791 5.45832 5.48997 5.61240 5.66793 5.74454 5.77323 5.81700 5.83484 5.95135 5.99385 6.02341 6.03065 6.08975 6.11832 6.24145 6.25504 6.32254 6.39106 6.42876 6.57628 6.62884 6.75675 6.84813 6.95489 7.30056 7.34320 7.42714 7.65707 7.77924 7.81204 7.87657 8.09307 8.19903 8.58929 9.18273 9.72354 11.20665 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.014219 B = 0.006290 C = 0.004793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.674388 B = 4450.097759 C = 5840.622686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.124 4.124 3 C 0.061 3.939 4 N -0.672 5.672 5 C 0.065 3.935 6 C 0.086 3.914 7 H 0.044 0.956 8 C -0.110 4.110 9 C -0.119 4.119 10 C -0.115 4.115 11 C 0.051 3.949 12 N -0.528 5.528 13 C 0.042 3.958 14 C -0.124 4.124 15 C 0.028 3.972 16 C -0.513 4.513 17 H 0.048 0.952 18 C 0.058 3.942 19 N -0.894 5.894 20 Si 0.882 3.118 21 H -0.275 1.275 22 H -0.286 1.286 23 H -0.286 1.286 24 H 0.044 0.956 25 H 0.049 0.951 26 H 0.055 0.945 27 H 0.083 0.917 28 H 0.063 0.937 29 H 0.018 0.982 30 H 0.065 0.935 31 H 0.348 0.652 32 H 0.026 0.974 33 H 0.076 0.924 34 H 0.067 0.933 35 H 0.059 0.941 36 H 0.058 0.942 37 H 0.057 0.943 38 H 0.066 0.934 39 H 0.059 0.941 40 H 0.068 0.932 41 H 0.034 0.966 42 H 0.123 0.877 43 H 0.045 0.955 44 H 0.026 0.974 45 H 0.045 0.955 46 H 0.030 0.970 47 H 0.005 0.995 48 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.039 15.894 1.389 15.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.162 4.162 3 C -0.068 4.068 4 N -0.305 5.305 5 C -0.065 4.065 6 C -0.023 4.023 7 H 0.062 0.938 8 C -0.149 4.149 9 C -0.156 4.156 10 C -0.153 4.153 11 C -0.077 4.077 12 N -0.252 5.252 13 C -0.085 4.085 14 C -0.163 4.163 15 C -0.009 4.009 16 C -0.552 4.552 17 H 0.066 0.934 18 C -0.143 4.143 19 N -0.534 5.534 20 Si 0.711 3.289 21 H -0.200 1.200 22 H -0.212 1.212 23 H -0.212 1.212 24 H 0.063 0.937 25 H 0.068 0.932 26 H 0.074 0.926 27 H 0.101 0.899 28 H 0.082 0.918 29 H 0.036 0.964 30 H 0.084 0.916 31 H 0.169 0.831 32 H 0.044 0.956 33 H 0.095 0.905 34 H 0.086 0.914 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.084 0.916 39 H 0.077 0.923 40 H 0.087 0.913 41 H 0.053 0.947 42 H 0.141 0.859 43 H 0.064 0.936 44 H 0.045 0.955 45 H 0.063 0.937 46 H 0.048 0.952 47 H 0.024 0.976 48 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -0.284 16.036 0.322 16.042 hybrid contribution 0.554 -1.297 2.228 2.637 sum 0.270 14.739 2.550 14.961 Atomic orbital electron populations 1.21700 0.96443 1.01550 1.00717 1.21520 0.94557 0.95850 1.04284 1.21976 0.88095 0.97330 0.99380 1.61067 1.06800 1.12713 1.49906 1.21981 0.94363 0.90396 0.99725 1.21561 0.94274 0.95157 0.91305 0.93828 1.21587 0.95464 0.96889 1.00941 1.21541 0.96090 1.00473 0.97536 1.21586 0.99363 0.97299 0.97086 1.22061 0.89048 0.95697 1.00937 1.62297 1.07550 1.30077 1.25302 1.22839 1.03005 0.85555 0.97069 1.22037 0.98313 0.97966 0.98003 1.19001 0.96227 0.89774 0.95921 1.21361 1.21570 0.96780 1.15473 0.93368 1.24972 0.95304 0.98302 0.95698 1.69973 1.27911 1.20333 1.35139 0.86699 0.78473 0.81989 0.81782 1.20014 1.21191 1.21179 0.93651 0.93175 0.92612 0.89860 0.91800 0.96403 0.91623 0.83107 0.95557 0.90528 0.91381 0.92269 0.92367 0.92453 0.91556 0.92270 0.91301 0.94743 0.85928 0.93622 0.95479 0.93673 0.95150 0.97621 0.93351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 9.91 37.15 0.37 -1.58 16 2 C -0.12 -1.96 5.94 -26.74 -0.16 -2.12 16 3 C 0.06 0.85 5.67 -3.82 -0.02 0.83 16 4 N -0.67 -10.13 2.16 -113.78 -0.25 -10.37 16 5 C 0.06 0.86 4.89 -3.83 -0.02 0.84 16 6 C 0.09 1.20 1.80 -67.72 -0.12 1.08 16 7 H 0.04 0.69 6.52 -51.93 -0.34 0.36 16 8 C -0.11 -1.28 5.36 -26.65 -0.14 -1.42 16 9 C -0.12 -1.32 6.00 -26.61 -0.16 -1.48 16 10 C -0.12 -1.37 6.09 -26.65 -0.16 -1.53 16 11 C 0.05 0.75 5.01 -3.83 -0.02 0.73 16 12 N -0.53 -8.18 4.69 -226.69 -1.06 -9.24 16 13 C 0.04 0.76 4.74 -3.83 -0.02 0.75 16 14 C -0.12 -2.58 3.68 -26.73 -0.10 -2.68 16 15 C 0.03 0.72 4.97 -27.89 -0.14 0.59 16 16 C -0.51 -14.51 9.11 -34.44 -0.31 -14.82 16 17 H 0.05 1.36 7.74 -52.49 -0.41 0.95 16 18 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 19 N -0.89 -26.70 13.29 55.43 0.74 -25.97 16 20 Si 0.88 21.86 29.54 -169.99 -5.02 16.84 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 24 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.08 1.56 7.10 -51.93 -0.37 1.19 16 28 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.35 5.75 7.14 -39.29 -0.28 5.47 16 32 H 0.03 0.32 8.13 -51.93 -0.42 -0.10 16 33 H 0.08 1.03 8.12 -51.93 -0.42 0.60 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.07 1.02 8.08 -51.93 -0.42 0.60 16 41 H 0.03 0.56 6.83 -51.93 -0.35 0.20 16 42 H 0.12 2.27 5.24 -51.93 -0.27 2.00 16 43 H 0.05 0.87 8.09 -51.93 -0.42 0.45 16 44 H 0.03 0.59 6.89 -51.93 -0.36 0.23 16 45 H 0.04 0.92 4.38 -51.93 -0.23 0.69 16 46 H 0.03 0.79 6.81 -51.93 -0.35 0.44 16 47 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 48 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 354.88 15.07 5.35 5.35 Total: -1.00 -28.74 354.88 -10.62 -39.37 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: -9.27 Total: 3.30 kcal Atomic # 6 Polarization: -18.16 SS G_CDS: -1.10 Total: -19.27 kcal Atomic # 7 Polarization: -45.01 SS G_CDS: -0.57 Total: -45.58 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -28.74 -10.62 -39.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111701996.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.343 kcal (2) G-P(sol) polarization free energy of solvation -28.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds