Wall clock time and date at job start Mon Mar 30 2020 07:14:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53000 * 109.47219 * 2 1 4 4 N 1.46898 * 109.47591 * 180.02562 * 3 2 1 5 5 C 1.46899 * 111.00515 * 179.97438 * 4 3 2 6 6 C 1.52997 * 109.47081 * 185.68054 * 5 4 3 7 7 H 1.09006 * 109.46220 * 308.53615 * 6 5 4 8 8 C 1.53045 * 109.46008 * 188.56359 * 6 5 4 9 9 C 1.53114 * 109.27720 * 180.81729 * 8 6 5 10 10 C 1.53119 * 109.16255 * 57.64969 * 9 8 6 11 11 C 1.53038 * 109.27905 * 302.34399 * 10 9 8 12 12 N 1.46846 * 109.52144 * 59.18369 * 11 10 9 13 13 C 1.46895 * 111.00200 * 174.16162 * 12 11 10 14 14 C 1.52998 * 109.47254 * 64.33599 * 13 12 11 15 15 C 1.52997 * 109.47263 * 175.12710 * 14 13 12 16 16 C 1.50695 * 109.47302 * 179.97438 * 15 14 13 17 17 H 1.07998 * 120.00114 * 0.02562 * 16 15 14 18 18 C 1.37882 * 120.00022 * 179.97438 * 16 15 14 19 19 N 1.31515 * 120.00265 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 120.00031 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.46695 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.46822 * 120.00291 * 20 18 16 23 23 H 1.48499 * 109.46866 * 240.00359 * 20 18 16 24 24 H 1.09001 * 109.47372 * 300.00485 * 1 2 3 25 25 H 1.09001 * 109.47384 * 59.99674 * 1 2 3 26 26 H 1.09001 * 109.47470 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47561 * 240.00272 * 2 1 3 28 28 H 1.09001 * 109.47395 * 119.99539 * 2 1 3 29 29 H 1.09005 * 109.47095 * 59.99934 * 3 2 1 30 30 H 1.09001 * 109.47067 * 299.99898 * 3 2 1 31 31 H 1.00901 * 110.99761 * 303.95806 * 4 3 2 32 32 H 1.09003 * 109.46888 * 65.67766 * 5 4 3 33 33 H 1.08992 * 109.47052 * 305.68128 * 5 4 3 34 34 H 1.09003 * 109.49970 * 300.75155 * 8 6 5 35 35 H 1.08991 * 109.50711 * 60.83345 * 8 6 5 36 36 H 1.09001 * 109.52533 * 177.55612 * 9 8 6 37 37 H 1.09005 * 109.52391 * 297.68442 * 9 8 6 38 38 H 1.09000 * 109.50336 * 62.29263 * 10 9 8 39 39 H 1.09003 * 109.50196 * 182.40178 * 10 9 8 40 40 H 1.08997 * 109.45906 * 179.19228 * 11 10 9 41 41 H 1.09001 * 109.46342 * 299.16588 * 11 10 9 42 42 H 1.08995 * 109.47302 * 184.34072 * 13 12 11 43 43 H 1.09002 * 109.46751 * 304.33833 * 13 12 11 44 44 H 1.09006 * 109.47118 * 295.12471 * 14 13 12 45 45 H 1.08996 * 109.47276 * 55.12437 * 14 13 12 46 46 H 1.08998 * 109.47117 * 300.00099 * 15 14 13 47 47 H 1.09004 * 109.47164 * 60.00037 * 15 14 13 48 48 H 0.97001 * 120.00098 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5089 1.4426 -0.0006 5 6 4.0354 2.8140 -0.0013 6 6 5.5581 2.7756 -0.1447 7 1 5.9762 2.0985 0.6003 8 6 6.1259 4.1809 0.0680 9 6 7.6476 4.1415 -0.0966 10 6 7.9889 3.5992 -1.4872 11 6 7.3673 2.2108 -1.6547 12 7 5.9110 2.3020 -1.4891 13 6 5.2665 1.0144 -1.7796 14 6 5.7216 -0.0265 -0.7547 15 6 4.9595 -1.3335 -0.9822 16 6 5.4082 -2.3588 0.0268 17 1 6.1613 -2.1037 0.7576 18 6 4.8564 -3.6224 0.0177 19 7 3.9389 -3.9330 -0.8719 20 14 5.4122 -4.8933 1.2690 21 1 6.4464 -4.2981 2.1530 22 1 4.2500 -5.3234 2.0873 23 1 5.9815 -6.0683 0.5616 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6766 1.9563 -0.8900 31 1 3.8708 0.9163 0.7805 32 1 3.7708 3.3051 0.9352 33 1 3.6057 3.3677 -0.8359 34 1 5.6978 4.8615 -0.6680 35 1 5.8766 4.5262 1.0713 36 1 8.0519 5.1480 0.0112 37 1 8.0797 3.4920 0.6648 38 1 7.5902 4.2707 -2.2476 39 1 9.0713 3.5286 -1.5947 40 1 7.5964 1.8279 -2.6491 41 1 7.7768 1.5364 -0.9027 42 1 4.1840 1.1293 -1.7246 43 1 5.5465 0.6855 -2.7804 44 1 6.7909 -0.2049 -0.8684 45 1 5.5196 0.3415 0.2512 46 1 3.8902 -1.1550 -0.8686 47 1 5.1615 -1.7015 -1.9881 48 1 3.5511 -4.8221 -0.8785 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000111701996.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:14 Heat of formation + Delta-G solvation = -30.938945 kcal Electronic energy + Delta-G solvation = -22358.590373 eV Core-core repulsion = 19446.785358 eV Total energy + Delta-G solvation = -2911.805015 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.69113 -37.46554 -36.05874 -34.67984 -34.06454 -32.15626 -31.60446 -28.29684 -27.25682 -25.60903 -24.28998 -23.58879 -22.72736 -22.08346 -21.60557 -19.79309 -18.40420 -17.42633 -16.63461 -16.42656 -16.03821 -15.84756 -15.60697 -15.23668 -14.99982 -14.77803 -14.45906 -14.08691 -13.77738 -13.69619 -13.43851 -13.25654 -12.92434 -12.80101 -12.73146 -12.49136 -12.43818 -12.41671 -12.17369 -12.07047 -11.83803 -11.61572 -11.53471 -11.27919 -11.18923 -11.13866 -11.05650 -10.89187 -10.45136 -9.03177 -8.83204 -8.12218 -6.21913 1.36530 1.37595 1.49469 2.42152 3.16270 3.19121 3.27974 3.91372 4.02638 4.10869 4.15076 4.22409 4.29584 4.43661 4.49421 4.54106 4.58289 4.63726 4.66545 4.71751 4.76903 4.85478 4.91230 4.91708 4.95127 4.95868 5.04470 5.06502 5.14721 5.26633 5.27704 5.28701 5.35869 5.36822 5.42332 5.51579 5.58341 5.58770 5.80866 5.94092 6.07911 6.25680 6.33226 6.40224 6.43445 6.54627 6.96091 7.45400 8.97699 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.014219 B = 0.006290 C = 0.004793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.674388 B = 4450.097759 C = 5840.622686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.120 4.120 3 C 0.070 3.930 4 N -0.691 5.691 5 C 0.070 3.930 6 C 0.084 3.916 7 H 0.022 0.978 8 C -0.104 4.104 9 C -0.118 4.118 10 C -0.108 4.108 11 C 0.047 3.953 12 N -0.523 5.523 13 C 0.056 3.944 14 C -0.102 4.102 15 C 0.039 3.961 16 C -0.534 4.534 17 H 0.046 0.954 18 C 0.006 3.994 19 N -0.926 5.926 20 Si 0.952 3.048 21 H -0.268 1.268 22 H -0.277 1.277 23 H -0.281 1.281 24 H 0.065 0.935 25 H 0.063 0.937 26 H 0.045 0.955 27 H 0.043 0.957 28 H 0.039 0.961 29 H 0.038 0.962 30 H 0.075 0.925 31 H 0.337 0.663 32 H 0.047 0.953 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.049 0.951 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.061 0.939 41 H 0.014 0.986 42 H 0.123 0.877 43 H 0.029 0.971 44 H 0.011 0.989 45 H 0.052 0.948 46 H 0.021 0.979 47 H -0.031 1.031 48 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.077 17.924 2.628 18.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.158 4.158 3 C -0.058 4.058 4 N -0.322 5.322 5 C -0.059 4.059 6 C -0.025 4.025 7 H 0.040 0.960 8 C -0.143 4.143 9 C -0.156 4.156 10 C -0.146 4.146 11 C -0.081 4.081 12 N -0.246 5.246 13 C -0.072 4.072 14 C -0.141 4.141 15 C 0.001 3.999 16 C -0.572 4.572 17 H 0.064 0.936 18 C -0.192 4.192 19 N -0.567 5.567 20 Si 0.777 3.223 21 H -0.192 1.192 22 H -0.203 1.203 23 H -0.207 1.207 24 H 0.084 0.916 25 H 0.082 0.918 26 H 0.064 0.936 27 H 0.062 0.938 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.093 0.907 31 H 0.156 0.844 32 H 0.065 0.935 33 H 0.099 0.901 34 H 0.094 0.906 35 H 0.095 0.905 36 H 0.101 0.899 37 H 0.068 0.932 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.080 0.920 41 H 0.032 0.968 42 H 0.140 0.860 43 H 0.048 0.952 44 H 0.030 0.970 45 H 0.070 0.930 46 H 0.039 0.961 47 H -0.013 1.013 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.163 18.090 1.560 18.158 hybrid contribution 0.521 -1.942 1.817 2.710 sum 0.358 16.148 3.377 16.501 Atomic orbital electron populations 1.21648 0.94218 1.01513 1.02391 1.21429 0.96530 0.96742 1.01097 1.21899 0.87401 0.95885 1.00662 1.61012 1.07672 1.13988 1.49558 1.21989 0.93643 0.89397 1.00874 1.21691 0.94975 0.96390 0.89439 0.95968 1.21571 0.95587 0.94854 1.02249 1.21561 0.95867 1.01602 0.96535 1.21549 0.99983 0.95118 0.97973 1.22141 0.88574 0.97546 0.99877 1.62342 1.07968 1.27685 1.26609 1.22598 1.03146 0.86219 0.95206 1.21790 0.96451 0.96495 0.99375 1.18848 0.96215 0.91574 0.93258 1.21705 1.21670 0.97877 1.15976 0.93601 1.25806 0.95254 1.00458 0.97655 1.70101 1.28871 1.21009 1.36727 0.85607 0.78321 0.79077 0.79279 1.19219 1.20275 1.20659 0.91619 0.91765 0.93564 0.93803 0.94177 0.94420 0.90652 0.84369 0.93520 0.90078 0.90619 0.90460 0.89922 0.93239 0.90919 0.90875 0.92045 0.96761 0.85996 0.95203 0.97018 0.92969 0.96112 1.01263 0.93103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.63 9.91 71.98 0.71 -2.91 16 2 C -0.12 -3.89 5.94 30.59 0.18 -3.71 16 3 C 0.07 1.89 5.67 86.30 0.49 2.38 16 4 N -0.69 -20.68 2.16 -513.90 -1.11 -21.79 16 5 C 0.07 1.73 4.89 86.30 0.42 2.15 16 6 C 0.08 2.23 1.80 44.94 0.08 2.31 16 7 H 0.02 0.70 6.52 -2.38 -0.02 0.68 16 8 C -0.10 -2.10 5.36 30.65 0.16 -1.94 16 9 C -0.12 -2.30 6.00 30.67 0.18 -2.12 16 10 C -0.11 -2.35 6.09 30.65 0.19 -2.17 16 11 C 0.05 1.37 5.01 86.33 0.43 1.80 16 12 N -0.52 -15.97 4.69 -871.11 -4.09 -20.06 16 13 C 0.06 2.10 4.74 86.30 0.41 2.51 16 14 C -0.10 -4.43 3.68 30.59 0.11 -4.32 16 15 C 0.04 2.08 4.97 29.85 0.15 2.23 16 16 C -0.53 -31.13 9.11 25.60 0.23 -30.90 16 17 H 0.05 2.64 7.74 -2.91 -0.02 2.61 16 18 C 0.01 0.35 5.46 84.66 0.46 0.81 16 19 N -0.93 -56.90 13.29 21.45 0.28 -56.61 16 20 Si 0.95 45.37 29.54 68.60 2.03 47.39 16 21 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 22 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 23 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 24 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 25 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 26 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.04 1.75 7.10 -2.39 -0.02 1.73 16 28 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.04 0.89 8.14 -2.38 -0.02 0.87 16 30 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.34 11.29 7.14 -89.69 -0.64 10.65 16 32 H 0.05 0.99 8.13 -2.39 -0.02 0.97 16 33 H 0.08 1.97 8.12 -2.39 -0.02 1.95 16 34 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.05 1.05 8.14 -2.38 -0.02 1.03 16 38 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.06 1.85 8.08 -2.39 -0.02 1.83 16 41 H 0.01 0.47 6.83 -2.39 -0.02 0.45 16 42 H 0.12 4.63 5.24 -2.39 -0.01 4.62 16 43 H 0.03 1.19 8.09 -2.39 -0.02 1.17 16 44 H 0.01 0.51 6.89 -2.38 -0.02 0.50 16 45 H 0.05 2.19 4.38 -2.39 -0.01 2.18 16 46 H 0.02 1.14 6.81 -2.39 -0.02 1.13 16 47 H -0.03 -1.88 8.14 -2.39 -0.02 -1.90 16 48 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 Total: -1.00 -63.61 354.88 1.59 -62.02 By element: Atomic # 1 Polarization: 22.66 SS G_CDS: 0.25 Total: 22.91 kcal Atomic # 6 Polarization: -38.09 SS G_CDS: 4.22 Total: -33.86 kcal Atomic # 7 Polarization: -93.54 SS G_CDS: -4.91 Total: -98.46 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.39 kcal Total: -63.61 1.59 -62.02 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111701996.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.083 kcal (2) G-P(sol) polarization free energy of solvation -63.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds