Wall clock time and date at job start Mon Mar 30 2020 09:15:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47615 * 2 1 4 4 N 1.46900 * 109.46919 * 120.00155 * 2 1 3 5 5 C 1.46903 * 111.00237 * 72.71402 * 4 2 1 6 6 C 1.50694 * 109.47214 * 66.04194 * 5 4 2 7 7 H 1.08003 * 120.00355 * 0.02562 * 6 5 4 8 8 C 1.37883 * 119.99968 * 180.02562 * 6 5 4 9 9 N 1.31515 * 120.00053 * 0.02562 * 8 6 5 10 10 Si 1.86806 * 120.00123 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.46894 * 90.00212 * 10 8 6 12 12 H 1.48493 * 109.46813 * 210.00466 * 10 8 6 13 13 H 1.48500 * 109.46847 * 330.00252 * 10 8 6 14 14 C 1.46900 * 111.00098 * 308.75729 * 4 2 1 15 15 H 1.08999 * 109.46728 * 326.39682 * 14 4 2 16 16 C 1.53000 * 109.46926 * 86.39563 * 14 4 2 17 17 C 1.52997 * 109.47178 * 206.39679 * 14 4 2 18 18 C 1.53005 * 109.47276 * 65.03827 * 17 14 4 19 19 H 1.08993 * 109.46411 * 303.88420 * 18 17 14 20 20 C 1.53043 * 109.46258 * 183.90291 * 18 17 14 21 21 C 1.53118 * 109.27654 * 180.80712 * 20 18 17 22 22 C 1.53122 * 109.16084 * 57.65307 * 21 20 18 23 23 C 1.53033 * 109.28025 * 302.34802 * 22 21 20 24 24 N 1.46844 * 109.52437 * 59.17611 * 23 22 21 25 25 H 1.08998 * 109.47118 * 307.36270 * 1 2 3 26 26 H 1.08998 * 109.47103 * 67.35914 * 1 2 3 27 27 H 1.09004 * 109.47637 * 187.36015 * 1 2 3 28 28 H 1.09005 * 109.46898 * 239.99990 * 2 1 3 29 29 H 1.08999 * 109.47150 * 182.61078 * 3 2 1 30 30 H 1.08994 * 109.46589 * 302.61589 * 3 2 1 31 31 H 1.08997 * 109.46410 * 62.61106 * 3 2 1 32 32 H 1.09003 * 109.47318 * 186.04789 * 5 4 2 33 33 H 1.09007 * 109.46440 * 306.04450 * 5 4 2 34 34 H 0.96996 * 119.99969 * 179.97438 * 9 8 6 35 35 H 1.09000 * 109.47277 * 299.99699 * 16 14 4 36 36 H 1.08999 * 109.47320 * 60.00481 * 16 14 4 37 37 H 1.09002 * 109.46753 * 180.02562 * 16 14 4 38 38 H 1.08995 * 109.47329 * 185.04080 * 17 14 4 39 39 H 1.09007 * 109.47232 * 305.04196 * 17 14 4 40 40 H 1.08995 * 109.50109 * 300.75123 * 20 18 17 41 41 H 1.08997 * 109.50146 * 60.86487 * 20 18 17 42 42 H 1.08995 * 109.51903 * 177.55967 * 21 20 18 43 43 H 1.09002 * 109.52478 * 297.68610 * 21 20 18 44 44 H 1.08996 * 109.50164 * 62.28606 * 22 21 20 45 45 H 1.08994 * 109.50350 * 182.40319 * 22 21 20 46 46 H 1.08998 * 109.46317 * 179.19873 * 23 22 21 47 47 H 1.09000 * 109.46192 * 299.17199 * 23 22 21 48 48 H 1.00906 * 110.99840 * 174.16356 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 1.8109 -2.1427 1.0922 6 6 2.6709 -2.6934 -0.0160 7 1 3.3091 -2.0324 -0.5836 8 6 2.6430 -4.0412 -0.3053 9 7 1.8655 -4.8461 0.3855 10 14 3.7096 -4.7240 -1.6785 11 1 5.0299 -5.1227 -1.1281 12 1 3.0453 -5.9087 -2.2787 13 1 3.9014 -3.6833 -2.7203 14 6 1.3856 -0.1577 2.4118 15 1 1.1996 0.9087 2.2843 16 6 0.0597 -0.8811 2.6555 17 6 2.3123 -0.3740 3.6098 18 6 3.5877 0.4505 3.4235 19 1 4.0574 0.1840 2.4768 20 6 4.5555 0.1594 4.5728 21 6 5.8216 1.0016 4.3930 22 6 5.4367 2.4827 4.3405 23 6 4.4434 2.7065 3.1981 24 7 3.2497 1.8795 3.4167 25 1 -0.3633 0.6236 0.8168 26 1 -0.3633 0.3956 -0.9484 27 1 -0.3634 -1.0192 0.1316 28 1 1.8933 -0.5139 -0.8900 29 1 3.1291 1.4427 -0.0468 30 1 1.6390 1.9696 -0.8656 31 1 1.7155 1.9425 0.9125 32 1 2.0824 -2.6195 2.0340 33 1 0.7623 -2.3435 0.8723 34 1 1.8457 -5.7943 0.1817 35 1 -0.6006 -0.7269 1.8021 36 1 0.2457 -1.9475 2.7831 37 1 -0.4110 -0.4839 3.5549 38 1 1.8062 -0.0591 4.5223 39 1 2.5703 -1.4305 3.6835 40 1 4.0813 0.4129 5.5209 41 1 4.8183 -0.8984 4.5681 42 1 6.4954 0.8298 5.2323 43 1 6.3176 0.7200 3.4641 44 1 4.9765 2.7728 5.2850 45 1 6.3292 3.0848 4.1699 46 1 4.1564 3.7575 3.1670 47 1 4.9090 2.4290 2.2524 48 1 2.5400 2.0799 2.7280 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157085592.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 09:15:01 Heat of formation + Delta-G solvation = -8.099151 kcal Electronic energy + Delta-G solvation = -22790.807562 eV Core-core repulsion = 19879.992954 eV Total energy + Delta-G solvation = -2910.814607 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.25198 -37.78328 -33.36832 -32.78882 -31.73790 -30.85341 -29.35249 -27.34531 -25.96437 -25.74053 -23.44063 -22.39156 -21.60362 -20.58888 -19.36805 -17.95931 -16.53008 -16.11792 -15.50692 -14.86717 -14.32301 -14.19189 -14.09308 -13.67696 -13.59514 -13.21928 -13.00551 -12.86166 -12.49784 -12.32387 -12.04720 -11.70792 -11.48727 -11.44261 -11.28618 -11.10012 -10.94963 -10.74100 -10.61911 -10.58798 -10.53399 -10.50202 -10.18701 -10.06658 -9.96094 -9.61491 -9.41613 -9.02454 -8.40175 -8.08806 -7.08958 -6.00229 -4.00391 3.32024 3.38397 3.41397 4.43346 4.48020 4.93279 4.99565 5.07222 5.12035 5.35278 5.36468 5.48489 5.60382 5.62462 5.69675 5.75954 5.81409 5.86138 5.93957 5.98093 6.02436 6.08635 6.10074 6.12999 6.17188 6.19884 6.26126 6.27270 6.35538 6.42549 6.47465 6.48484 6.58968 6.74283 6.78249 6.83137 6.90407 6.93497 7.39019 7.43446 7.50125 7.71347 7.85058 8.18316 8.31595 8.64318 9.07824 9.63427 11.10324 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.016937 B = 0.006172 C = 0.005481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.824614 B = 4535.861655 C = 5107.032172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.080 3.920 3 C -0.139 4.139 4 N -0.523 5.523 5 C 0.193 3.807 6 C -0.504 4.504 7 H 0.060 0.940 8 C 0.056 3.944 9 N -0.898 5.898 10 Si 0.893 3.107 11 H -0.281 1.281 12 H -0.288 1.288 13 H -0.275 1.275 14 C 0.078 3.922 15 H 0.065 0.935 16 C -0.199 4.199 17 C -0.098 4.098 18 C 0.096 3.904 19 H 0.061 0.939 20 C -0.112 4.112 21 C -0.121 4.121 22 C -0.114 4.114 23 C 0.059 3.941 24 N -0.688 5.688 25 H 0.051 0.949 26 H 0.043 0.957 27 H 0.066 0.934 28 H 0.090 0.910 29 H 0.054 0.946 30 H 0.047 0.953 31 H 0.045 0.955 32 H 0.029 0.971 33 H -0.001 1.001 34 H 0.260 0.740 35 H 0.070 0.930 36 H 0.066 0.934 37 H 0.041 0.959 38 H 0.058 0.942 39 H 0.070 0.930 40 H 0.062 0.938 41 H 0.064 0.936 42 H 0.056 0.944 43 H 0.058 0.942 44 H 0.065 0.935 45 H 0.058 0.942 46 H 0.065 0.935 47 H 0.028 0.972 48 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.802 13.146 5.598 14.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.029 4.029 3 C -0.197 4.197 4 N -0.246 5.246 5 C 0.068 3.932 6 C -0.543 4.543 7 H 0.078 0.922 8 C -0.145 4.145 9 N -0.538 5.538 10 Si 0.721 3.279 11 H -0.208 1.208 12 H -0.214 1.214 13 H -0.200 1.200 14 C -0.031 4.031 15 H 0.083 0.917 16 C -0.258 4.258 17 C -0.136 4.136 18 C -0.014 4.014 19 H 0.078 0.922 20 C -0.150 4.150 21 C -0.158 4.158 22 C -0.152 4.152 23 C -0.071 4.071 24 N -0.322 5.322 25 H 0.070 0.930 26 H 0.062 0.938 27 H 0.084 0.916 28 H 0.108 0.892 29 H 0.073 0.927 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.047 0.953 33 H 0.017 0.983 34 H 0.069 0.931 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.060 0.940 38 H 0.077 0.923 39 H 0.088 0.912 40 H 0.081 0.919 41 H 0.083 0.917 42 H 0.075 0.925 43 H 0.077 0.923 44 H 0.084 0.916 45 H 0.076 0.924 46 H 0.083 0.917 47 H 0.046 0.954 48 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 2.297 13.089 6.324 14.717 hybrid contribution -0.205 -0.882 -1.725 1.948 sum 2.092 12.207 4.599 13.211 Atomic orbital electron populations 1.22730 0.99032 1.02017 1.00329 1.21577 0.91618 0.93754 0.95961 1.21890 1.01154 0.96575 1.00073 1.62449 1.55578 1.07141 0.99456 1.19736 0.95381 0.80913 0.97168 1.21202 1.24065 0.92549 1.16499 0.92189 1.24952 0.95787 0.97090 0.96669 1.69951 1.38957 1.04221 1.40694 0.86584 0.80532 0.78490 0.82299 1.20756 1.21421 1.19988 1.21639 0.91841 0.97869 0.91795 0.91659 1.22947 0.98848 1.02484 1.01483 1.21596 0.95023 1.00086 0.96884 1.21378 0.95416 0.86635 0.97930 0.92150 1.21626 0.95127 0.99287 0.98976 1.21564 0.97677 0.95203 1.01387 1.21553 0.97934 0.96471 0.99258 1.21832 0.91579 0.97011 0.96668 1.60481 1.10761 1.05679 1.55238 0.92985 0.93806 0.91568 0.89155 0.92719 0.93374 0.93639 0.95323 0.98317 0.93061 0.91160 0.91480 0.93981 0.92314 0.91177 0.91949 0.91744 0.92482 0.92277 0.91606 0.92370 0.91696 0.95384 0.84029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.08 7.31 37.16 0.27 -2.81 16 2 C 0.08 1.46 2.75 -67.71 -0.19 1.28 16 3 C -0.14 -2.08 9.25 37.16 0.34 -1.74 16 4 N -0.52 -10.36 3.71 -220.14 -0.82 -11.18 16 5 C 0.19 4.75 3.22 -4.98 -0.02 4.73 16 6 C -0.50 -13.75 8.33 -34.44 -0.29 -14.04 16 7 H 0.06 1.64 7.21 -52.48 -0.38 1.26 16 8 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 9 N -0.90 -26.32 13.29 55.43 0.74 -25.58 16 10 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 11 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 13 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 14 C 0.08 1.32 1.53 -67.71 -0.10 1.22 16 15 H 0.07 1.03 4.03 -51.93 -0.21 0.82 16 16 C -0.20 -3.44 7.60 37.16 0.28 -3.16 16 17 C -0.10 -1.61 4.47 -26.73 -0.12 -1.73 16 18 C 0.10 1.47 2.44 -67.72 -0.17 1.31 16 19 H 0.06 1.11 7.65 -51.93 -0.40 0.71 16 20 C -0.11 -1.57 5.37 -26.65 -0.14 -1.72 16 21 C -0.12 -1.50 6.00 -26.61 -0.16 -1.66 16 22 C -0.11 -1.30 6.09 -26.65 -0.16 -1.47 16 23 C 0.06 0.72 6.55 -3.84 -0.03 0.70 16 24 N -0.69 -9.49 6.50 -106.76 -0.69 -10.18 16 25 H 0.05 0.80 5.95 -51.93 -0.31 0.49 16 26 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.07 1.27 5.41 -51.93 -0.28 0.99 16 28 H 0.09 1.90 6.61 -51.93 -0.34 1.56 16 29 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.04 0.63 5.06 -51.93 -0.26 0.36 16 32 H 0.03 0.77 6.65 -51.93 -0.35 0.43 16 33 H 0.00 -0.02 5.39 -51.93 -0.28 -0.30 16 34 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 35 H 0.07 1.21 4.01 -51.93 -0.21 1.00 16 36 H 0.07 1.33 6.40 -51.93 -0.33 0.99 16 37 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 39 H 0.07 1.31 7.09 -51.93 -0.37 0.94 16 40 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 45 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 46 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 47 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 48 H 0.34 4.69 5.61 -39.29 -0.22 4.47 16 LS Contribution 341.96 15.07 5.15 5.15 Total: -1.00 -27.66 341.96 -9.78 -37.43 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: -8.57 Total: 5.42 kcal Atomic # 6 Polarization: -17.04 SS G_CDS: -0.57 Total: -17.61 kcal Atomic # 7 Polarization: -46.16 SS G_CDS: -0.77 Total: -46.94 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -27.66 -9.78 -37.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157085592.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.335 kcal (2) G-P(sol) polarization free energy of solvation -27.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds